Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20925

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
4,754,943	+				+1.3
4,754,943	+		DDA3937_RS20920	0.32	+0.1
4,754,944	-		DDA3937_RS20920	0.32	+0.1
4,754,944	-		DDA3937_RS20920	0.32	-0.6
4,754,947	+		DDA3937_RS20920	0.32	-0.1
4,754,947	+		DDA3937_RS20920	0.32	+0.7
4,754,947	+		DDA3937_RS20920	0.32	-0.6
4,754,947	+		DDA3937_RS20920	0.32	-0.2
4,755,051	+		DDA3937_RS20920	0.41	-0.3
4,755,051	+		DDA3937_RS20920	0.41	-0.3
4,755,051	+				+1.7
4,755,051	+		DDA3937_RS20920	0.41	-0.4
4,755,051	+		DDA3937_RS20920	0.41	-0.9
4,755,052	-		DDA3937_RS20920	0.41	+1.0
4,755,052	-		DDA3937_RS20920	0.41	-0.1
4,755,052	-		DDA3937_RS20920	0.41	-1.0
4,755,052	-		DDA3937_RS20920	0.41	+1.2
4,755,056	-		DDA3937_RS20920	0.41	-1.0
4,755,056	-		DDA3937_RS20920	0.41	+0.2
4,755,222	+		DDA3937_RS20920	0.55	+0.5
4,755,222	+		DDA3937_RS20920	0.55	+0.3
4,755,223	-		DDA3937_RS20920	0.55	+0.4
4,755,223	-		DDA3937_RS20920	0.55	+0.0
4,755,223	-		DDA3937_RS20920	0.55	-0.6
4,755,223	-		DDA3937_RS20920	0.55	+0.5
4,755,396	-		DDA3937_RS20920	0.70	-1.0
4,755,396	-		DDA3937_RS20920	0.70	+0.4
4,755,514	+		DDA3937_RS20920	0.80	+0.7
4,755,515	-		DDA3937_RS20920	0.80	-0.0
4,755,566	+		DDA3937_RS20920	0.84	+0.1
4,755,598	-		DDA3937_RS20920	0.87	+0.1
4,755,598	-		DDA3937_RS20920	0.87	-1.9
4,755,598	-		DDA3937_RS20920	0.87	+0.7
4,755,668	+				-0.0
4,755,668	+				-0.0
4,755,669	-				-1.0
4,755,669	-				-0.2
4,755,669	-				-0.6
4,755,669	-				-0.4
4,755,673	+				+0.2
4,755,673	+				-1.0
4,755,674	-				-1.0
4,755,724	+				+0.2
4,756,187	+		DDA3937_RS20925	0.30	-0.9
4,756,187	+		DDA3937_RS20925	0.30	-0.4
4,756,187	+		DDA3937_RS20925	0.30	-2.1
4,756,188	-		DDA3937_RS20925	0.30	+1.1
4,756,188	-		DDA3937_RS20925	0.30	+1.7
4,756,451	+		DDA3937_RS20925	0.47	+0.3
4,756,681	+				-0.3
4,756,681	+		DDA3937_RS20925	0.62	+0.8
4,756,681	+		DDA3937_RS20925	0.62	-0.6
4,756,681	+		DDA3937_RS20925	0.62	+1.1
4,756,681	+		DDA3937_RS20925	0.62	-0.1
4,756,681	+		DDA3937_RS20925	0.62	+1.1
4,756,681	+		DDA3937_RS20925	0.62	-0.1
4,756,681	+		DDA3937_RS20925	0.62	+0.4
4,756,681	+		DDA3937_RS20925	0.62	+0.1
4,756,681	+		DDA3937_RS20925	0.62	+0.2
4,756,681	+		DDA3937_RS20925	0.62	+0.5
4,756,681	+		DDA3937_RS20925	0.62	-0.2
4,756,682	-		DDA3937_RS20925	0.62	-0.4
4,756,682	-				-0.6
4,756,682	-		DDA3937_RS20925	0.62	-1.0
4,756,682	-		DDA3937_RS20925	0.62	+0.2
4,756,682	-		DDA3937_RS20925	0.62	-3.5
4,756,682	-		DDA3937_RS20925	0.62	-0.1
4,756,682	-		DDA3937_RS20925	0.62	-0.5
4,756,682	-				+1.7
4,756,682	-		DDA3937_RS20925	0.62	+1.8
4,756,682	-		DDA3937_RS20925	0.62	+0.9
4,756,682	-		DDA3937_RS20925	0.62	-0.9
4,756,682	-				+3.3
4,756,860	-		DDA3937_RS20925	0.73	-1.7
4,756,912	+		DDA3937_RS20925	0.77	-2.4
4,756,912	+		DDA3937_RS20925	0.77	+0.9
4,756,913	-		DDA3937_RS20925	0.77	+0.9
4,756,913	-		DDA3937_RS20925	0.77	-1.3
4,756,913	-		DDA3937_RS20925	0.77	+0.3
4,756,913	-		DDA3937_RS20925	0.77	-0.7
4,756,924	+		DDA3937_RS20925	0.77	-1.3
4,756,925	-		DDA3937_RS20925	0.78	-1.4
4,756,925	-		DDA3937_RS20925	0.78	-0.3
4,757,048	+		DDA3937_RS20925	0.86	+0.6
4,757,082	+		DDA3937_RS20925	0.88	+0.1
4,757,083	-		DDA3937_RS20925	0.88	-0.0
4,757,083	-		DDA3937_RS20925	0.88	-1.6
4,757,095	+		DDA3937_RS20925	0.89	-1.0
4,757,095	+		DDA3937_RS20925	0.89	+0.7
4,757,095	+		DDA3937_RS20925	0.89	+0.1
4,757,095	+		DDA3937_RS20925	0.89	-1.0
4,757,095	+		DDA3937_RS20925	0.89	+1.4
4,757,096	-		DDA3937_RS20925	0.89	-1.2
4,757,096	-		DDA3937_RS20925	0.89	+1.8
4,757,096	-		DDA3937_RS20925	0.89	+0.9
4,757,096	-		DDA3937_RS20925	0.89	-1.3
4,757,096	-		DDA3937_RS20925	0.89	+1.0
4,757,096	-		DDA3937_RS20925	0.89	-1.0
4,757,110	+		DDA3937_RS20925	0.90	-1.7
4,757,110	+		DDA3937_RS20925	0.90	+2.0
4,757,271	-				-1.0
4,757,271	-				+0.0
4,757,350	-				-1.5
4,757,350	-				-1.3
4,757,365	+				-0.2
4,757,366	-				-0.1
4,757,389	+				-0.7
4,757,441	+				-0.3
4,757,537	-		DDA3937_RS20930	0.19	-0.3
4,757,537	-		DDA3937_RS20930	0.19	-1.6
4,757,537	-		DDA3937_RS20930	0.19	-0.2
4,757,550	+		DDA3937_RS20930	0.21	-0.2
4,757,550	+		DDA3937_RS20930	0.21	-0.1
4,757,551	-		DDA3937_RS20930	0.21	-0.4
4,757,630	-		DDA3937_RS20930	0.29	-1.2
4,757,797	+		DDA3937_RS20930	0.45	-1.4
4,757,798	-		DDA3937_RS20930	0.45	+0.8
4,757,798	-		DDA3937_RS20930	0.45	-0.7
4,757,866	+		DDA3937_RS20930	0.52	-0.7
4,757,867	-		DDA3937_RS20930	0.52	-0.1
4,757,867	-		DDA3937_RS20930	0.52	-0.4
4,757,925	+		DDA3937_RS20930	0.58	-0.3
4,757,925	+		DDA3937_RS20930	0.58	-0.4
4,757,925	+		DDA3937_RS20930	0.58	+1.6
4,757,926	-		DDA3937_RS20930	0.58	+1.0
4,757,957	-		DDA3937_RS20930	0.61	-0.3
4,757,992	+		DDA3937_RS20930	0.65	+0.7
4,757,992	+		DDA3937_RS20930	0.65	-0.1
4,757,992	+		DDA3937_RS20930	0.65	-0.5
4,757,993	-		DDA3937_RS20930	0.65	+0.1
4,757,995	-		DDA3937_RS20930	0.65	-0.1
4,757,999	-		DDA3937_RS20930	0.66	+1.1
4,758,015	-		DDA3937_RS20930	0.67	-1.0
4,758,015	-		DDA3937_RS20930	0.67	-0.3
4,758,129	-		DDA3937_RS20930	0.79	+0.4
4,758,205	+		DDA3937_RS20930	0.86	+0.8
4,758,205	+		DDA3937_RS20930	0.86	-0.2