Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19945

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
4,542,649	-		DDA3937_RS19940	0.26	+0.2
4,542,649	-		DDA3937_RS19940	0.26	-0.3
4,542,735	+		DDA3937_RS19940	0.33	+0.1
4,542,735	+		DDA3937_RS19940	0.33	+0.9
4,542,736	-		DDA3937_RS19940	0.33	+0.7
4,542,736	-		DDA3937_RS19940	0.33	+0.1
4,542,736	-		DDA3937_RS19940	0.33	-1.1
4,542,736	-		DDA3937_RS19940	0.33	-1.5
4,542,741	+		DDA3937_RS19940	0.34	+0.2
4,542,742	-		DDA3937_RS19940	0.34	-1.9
4,542,761	+		DDA3937_RS19940	0.35	+0.5
4,542,761	+		DDA3937_RS19940	0.35	-0.1
4,542,762	-		DDA3937_RS19940	0.35	-1.1
4,542,828	+		DDA3937_RS19940	0.41	+2.0
4,542,828	+		DDA3937_RS19940	0.41	-0.1
4,542,829	-		DDA3937_RS19940	0.41	+0.7
4,542,829	-		DDA3937_RS19940	0.41	-0.6
4,542,846	+		DDA3937_RS19940	0.43	+0.1
4,542,852	+		DDA3937_RS19940	0.43	-1.1
4,542,855	+		DDA3937_RS19940	0.43	-1.3
4,542,855	+		DDA3937_RS19940	0.43	+0.9
4,542,856	-		DDA3937_RS19940	0.43	-0.7
4,542,856	-		DDA3937_RS19940	0.43	+1.3
4,542,856	-		DDA3937_RS19940	0.43	-0.7
4,542,891	+		DDA3937_RS19940	0.46	-1.3
4,542,892	-		DDA3937_RS19940	0.47	-0.2
4,543,125	+		DDA3937_RS19940	0.67	-0.4
4,543,125	+		DDA3937_RS19940	0.67	-1.3
4,543,126	-		DDA3937_RS19940	0.67	-0.2
4,543,126	-		DDA3937_RS19940	0.67	+1.3
4,543,162	-		DDA3937_RS19940	0.70	-1.0
4,543,514	+				-0.1
4,543,514	+				-0.3
4,543,514	+				+0.3
4,543,514	+				-0.8
4,543,514	+				-1.0
4,543,515	-				+0.1
4,543,515	-				-0.8
4,543,515	-				-1.1
4,543,581	+				-0.3
4,543,581	+				-0.7
4,543,581	+				+0.3
4,543,581	+				-0.9
4,543,581	+				-0.3
4,543,582	-				+2.7
4,543,582	-				-2.1
4,543,625	-				-1.1
4,543,625	-				-1.6
4,543,879	+		DDA3937_RS19945	0.38	-0.5
4,544,088	+		DDA3937_RS19945	0.65	-0.5
4,544,088	+		DDA3937_RS19945	0.65	+1.3
4,544,088	+		DDA3937_RS19945	0.65	-0.7
4,544,089	-		DDA3937_RS19945	0.65	-1.0
4,544,089	-		DDA3937_RS19945	0.65	+0.6
4,544,089	-		DDA3937_RS19945	0.65	-0.3
4,544,127	+		DDA3937_RS19945	0.70	+0.1
4,544,128	-		DDA3937_RS19945	0.70	-0.5
4,544,128	-				+0.9
4,544,143	+		DDA3937_RS19945	0.72	-1.0
4,544,143	+		DDA3937_RS19945	0.72	+2.2
4,544,145	+		DDA3937_RS19945	0.73	+0.2
4,544,179	+		DDA3937_RS19945	0.77	-0.7
4,544,180	-		DDA3937_RS19945	0.77	+3.9
4,544,180	-		DDA3937_RS19945	0.77	-1.8
4,544,180	-		DDA3937_RS19945	0.77	+0.7
4,544,180	-		DDA3937_RS19945	0.77	+1.3
4,544,348	-				-0.3
4,544,418	+				-1.5
4,544,418	+				+0.2
4,544,419	-				-0.2
4,544,419	-				-0.5
4,544,439	+		DDA3937_RS19950	0.11	-0.9
4,544,548	+		DDA3937_RS19950	0.28	+0.2
4,544,549	-		DDA3937_RS19950	0.28	-0.3
4,544,549	-		DDA3937_RS19950	0.28	+2.9
4,544,549	-		DDA3937_RS19950	0.28	-0.2
4,544,549	-		DDA3937_RS19950	0.28	+2.1
4,544,555	-		DDA3937_RS19950	0.29	+1.7
4,544,555	-		DDA3937_RS19950	0.29	-2.5
4,544,566	+		DDA3937_RS19950	0.30	+0.1
4,544,566	+		DDA3937_RS19950	0.30	+1.1
4,544,566	+		DDA3937_RS19950	0.30	+0.3
4,544,566	+		DDA3937_RS19950	0.30	-0.8
4,544,566	+		DDA3937_RS19950	0.30	+2.1
4,544,567	-		DDA3937_RS19950	0.30	+0.2
4,544,719	+				+0.1
4,544,719	+		DDA3937_RS19950	0.53	+1.1
4,544,720	-		DDA3937_RS19950	0.53	-0.6
4,544,720	-		DDA3937_RS19950	0.53	+1.7
4,544,720	-		DDA3937_RS19950	0.53	-0.4
4,544,721	+		DDA3937_RS19950	0.53	-0.4
4,544,721	+		DDA3937_RS19950	0.53	+0.0
4,544,721	+		DDA3937_RS19950	0.53	+0.3
4,544,721	+		DDA3937_RS19950	0.53	+0.9
4,544,721	+		DDA3937_RS19950	0.53	-0.6
4,544,721	+		DDA3937_RS19950	0.53	+0.2
4,544,721	+		DDA3937_RS19950	0.53	-0.9
4,544,721	+		DDA3937_RS19950	0.53	+0.2
4,544,722	-		DDA3937_RS19950	0.53	+2.0
4,544,722	-		DDA3937_RS19950	0.53	-1.1
4,544,722	-		DDA3937_RS19950	0.53	+0.3
4,544,722	-		DDA3937_RS19950	0.53	-2.7
4,544,740	+		DDA3937_RS19950	0.56	-0.1
4,544,764	+		DDA3937_RS19950	0.60	-0.7
4,544,811	+		DDA3937_RS19950	0.67	-0.3
4,544,811	+		DDA3937_RS19950	0.67	+0.3
4,544,811	+		DDA3937_RS19950	0.67	-0.6
4,544,812	-		DDA3937_RS19950	0.67	+0.9
4,544,860	+		DDA3937_RS19950	0.74	-0.5
4,544,860	+		DDA3937_RS19950	0.74	-0.2
4,544,860	+		DDA3937_RS19950	0.74	+0.9
4,544,861	-		DDA3937_RS19950	0.74	-0.6
4,544,861	-		DDA3937_RS19950	0.74	-1.3
4,544,862	+		DDA3937_RS19950	0.74	-0.7
4,544,862	+		DDA3937_RS19950	0.74	-0.9
4,544,862	+		DDA3937_RS19950	0.74	-0.7
4,544,862	+		DDA3937_RS19950	0.74	-1.8
4,544,862	+		DDA3937_RS19950	0.74	+2.6
4,544,862	+		DDA3937_RS19950	0.74	-0.2
4,544,863	-		DDA3937_RS19950	0.74	-0.7
4,544,863	-		DDA3937_RS19950	0.74	+0.1
4,544,863	-		DDA3937_RS19950	0.74	-2.2
4,544,863	-		DDA3937_RS19950	0.74	-0.7
4,544,863	-		DDA3937_RS19950	0.74	-0.9
4,544,930	+		DDA3937_RS19950	0.84	+2.0
4,544,931	-		DDA3937_RS19950	0.85	-1.5
4,544,978	+				-0.9
4,544,978	+				-0.1
4,544,979	-				+1.7
4,544,982	+				+0.3
4,544,982	+				-1.4
4,544,982	+				-1.1
4,544,982	+				+0.4
4,544,983	-				-0.0
4,544,983	-				+0.7
4,544,983	-				+0.5
4,545,041	+				-0.3
4,545,041	+				+0.5
4,545,042	-				-0.6
4,545,047	+				+0.1
4,545,048	-				-2.9
4,545,048	-				-1.3
4,545,108	+				-1.8
4,545,109	-				+0.2
4,545,109	-				-0.3
4,545,143	-				-1.7
4,545,143	-				+0.0
4,545,233	-		DDA3937_RS19955	0.16	+0.3
4,545,339	+		DDA3937_RS19955	0.30	+0.2
4,545,339	+		DDA3937_RS19955	0.30	+0.1
4,545,339	+		DDA3937_RS19955	0.30	-0.1
4,545,339	+		DDA3937_RS19955	0.30	-1.0
4,545,339	+		DDA3937_RS19955	0.30	+0.3
4,545,340	-		DDA3937_RS19955	0.30	-1.1
4,545,340	-		DDA3937_RS19955	0.30	-1.8
4,545,340	-		DDA3937_RS19955	0.30	+0.1
4,545,340	-		DDA3937_RS19955	0.30	+1.3