Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18325

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS18320 and DDA3937_RS18325 are separated by 72 nucleotidesDDA3937_RS18325 and DDA3937_RS18330 overlap by 20 nucleotidesDDA3937_RS18330 and DDA3937_RS18335 are separated by 3 nucleotidesDDA3937_RS18335 and DDA3937_RS18340 overlap by 1 nucleotides DDA3937_RS18320: DDA3937_RS18320 - ribonucleoside hydrolase RihC, at 4,184,715 to 4,185,632 _RS18320 DDA3937_RS18325: DDA3937_RS18325 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 4,185,705 to 4,186,655 _RS18325 DDA3937_RS18330: DDA3937_RS18330 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 4,186,636 to 4,187,109 _RS18330 DDA3937_RS18335: DDA3937_RS18335 - signal peptidase II, at 4,187,113 to 4,187,619 _RS18335 DDA3937_RS18340: DDA3937_RS18340 - isoleucine--tRNA ligase, at 4,187,619 to 4,190,444 _RS18340 Position (kb) 4185 4186 4187Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4184.846 kb on - strand, within DDA3937_RS18320at 4184.876 kb on - strand, within DDA3937_RS18320at 4184.876 kb on - strand, within DDA3937_RS18320at 4184.911 kb on + strand, within DDA3937_RS18320at 4184.911 kb on + strand, within DDA3937_RS18320at 4184.911 kb on + strand, within DDA3937_RS18320at 4184.925 kb on + strand, within DDA3937_RS18320at 4184.925 kb on + strand, within DDA3937_RS18320at 4184.925 kb on + strand, within DDA3937_RS18320at 4184.925 kb on + strand, within DDA3937_RS18320at 4184.925 kb on + strand, within DDA3937_RS18320at 4184.926 kb on - strand, within DDA3937_RS18320at 4184.926 kb on - strand, within DDA3937_RS18320at 4184.926 kb on - strand, within DDA3937_RS18320at 4184.926 kb on - strand, within DDA3937_RS18320at 4184.937 kb on - strand, within DDA3937_RS18320at 4184.968 kb on + strand, within DDA3937_RS18320at 4185.059 kb on + strand, within DDA3937_RS18320at 4185.200 kb on + strand, within DDA3937_RS18320at 4185.201 kb on - strand, within DDA3937_RS18320at 4185.212 kb on + strand, within DDA3937_RS18320at 4185.246 kb on - strand, within DDA3937_RS18320at 4185.307 kb on + strand, within DDA3937_RS18320at 4185.307 kb on + strand, within DDA3937_RS18320at 4185.307 kb on + strand, within DDA3937_RS18320at 4185.307 kb on + strand, within DDA3937_RS18320at 4185.307 kb on + strand, within DDA3937_RS18320at 4185.307 kb on + strand, within DDA3937_RS18320at 4185.307 kb on + strand, within DDA3937_RS18320at 4185.307 kb on + strand, within DDA3937_RS18320at 4185.308 kb on - strand, within DDA3937_RS18320at 4185.308 kb on - strand, within DDA3937_RS18320at 4185.308 kb on - strand, within DDA3937_RS18320at 4185.308 kb on - strand, within DDA3937_RS18320at 4185.308 kb on - strand, within DDA3937_RS18320at 4185.308 kb on - strand, within DDA3937_RS18320at 4185.308 kb on - strand, within DDA3937_RS18320at 4185.308 kb on - strand, within DDA3937_RS18320at 4185.394 kb on + strand, within DDA3937_RS18320at 4185.394 kb on + strand, within DDA3937_RS18320at 4185.394 kb on + strand, within DDA3937_RS18320at 4185.395 kb on - strand, within DDA3937_RS18320at 4185.395 kb on - strand, within DDA3937_RS18320at 4185.395 kb on - strand, within DDA3937_RS18320at 4185.561 kb on + strandat 4185.562 kb on - strandat 4185.707 kb on - strandat 4185.729 kb on - strandat 4186.691 kb on - strand, within DDA3937_RS18330at 4186.786 kb on - strand, within DDA3937_RS18330at 4186.786 kb on - strand, within DDA3937_RS18330at 4186.786 kb on - strand, within DDA3937_RS18330at 4186.903 kb on - strand, within DDA3937_RS18330

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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4,184,846 - DDA3937_RS18320 0.14 +0.5
4,184,876 - DDA3937_RS18320 0.18 -0.3
4,184,876 - DDA3937_RS18320 0.18 +1.1
4,184,911 + DDA3937_RS18320 0.21 +0.7
4,184,911 + DDA3937_RS18320 0.21 +0.5
4,184,911 + DDA3937_RS18320 0.21 +1.4
4,184,925 + DDA3937_RS18320 0.23 +3.9
4,184,925 + DDA3937_RS18320 0.23 +0.8
4,184,925 + DDA3937_RS18320 0.23 -1.0
4,184,925 + DDA3937_RS18320 0.23 +0.0
4,184,925 + DDA3937_RS18320 0.23 +0.1
4,184,926 - DDA3937_RS18320 0.23 +1.9
4,184,926 - DDA3937_RS18320 0.23 +1.2
4,184,926 - DDA3937_RS18320 0.23 -0.7
4,184,926 - DDA3937_RS18320 0.23 +1.6
4,184,937 - DDA3937_RS18320 0.24 -1.7
4,184,968 + DDA3937_RS18320 0.28 -2.1
4,185,059 + DDA3937_RS18320 0.37 -0.1
4,185,200 + DDA3937_RS18320 0.53 +0.4
4,185,201 - DDA3937_RS18320 0.53 +0.7
4,185,212 + DDA3937_RS18320 0.54 +1.2
4,185,246 - DDA3937_RS18320 0.58 +0.9
4,185,307 + DDA3937_RS18320 0.64 -0.3
4,185,307 + DDA3937_RS18320 0.64 -0.2
4,185,307 + DDA3937_RS18320 0.64 +0.2
4,185,307 + DDA3937_RS18320 0.64 -0.6
4,185,307 + DDA3937_RS18320 0.64 -0.1
4,185,307 + DDA3937_RS18320 0.64 +0.3
4,185,307 + DDA3937_RS18320 0.64 -0.7
4,185,307 + DDA3937_RS18320 0.64 +1.5
4,185,308 - DDA3937_RS18320 0.65 -0.2
4,185,308 - DDA3937_RS18320 0.65 -0.2
4,185,308 - DDA3937_RS18320 0.65 -0.2
4,185,308 - DDA3937_RS18320 0.65 +0.3
4,185,308 - DDA3937_RS18320 0.65 -0.3
4,185,308 - DDA3937_RS18320 0.65 -1.4
4,185,308 - DDA3937_RS18320 0.65 -0.1
4,185,308 - DDA3937_RS18320 0.65 -2.7
4,185,394 + DDA3937_RS18320 0.74 -0.1
4,185,394 + DDA3937_RS18320 0.74 -0.6
4,185,394 + DDA3937_RS18320 0.74 +0.7
4,185,395 - DDA3937_RS18320 0.74 +0.6
4,185,395 - DDA3937_RS18320 0.74 +1.6
4,185,395 - DDA3937_RS18320 0.74 +0.9
4,185,561 + +1.3
4,185,562 - -0.1
4,185,707 - -1.0
4,185,729 - -0.2
4,186,691 - DDA3937_RS18330 0.12 +0.0
4,186,786 - DDA3937_RS18330 0.32 -2.1
4,186,786 - DDA3937_RS18330 0.32 -2.9
4,186,786 - DDA3937_RS18330 0.32 +0.6
4,186,903 - DDA3937_RS18330 0.56 -0.7

Or see this region's nucleotide sequence