Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15610

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,572,869	+		DDA3937_RS15605	0.58	-0.5
3,572,877	+		DDA3937_RS15605	0.58	+0.1
3,572,941	-		DDA3937_RS15605	0.64	-1.2
3,572,941	-		DDA3937_RS15605	0.64	-0.3
3,573,051	-		DDA3937_RS15605	0.73	-1.7
3,573,051	-		DDA3937_RS15605	0.73	+1.1
3,573,085	+		DDA3937_RS15605	0.76	-0.7
3,573,085	+		DDA3937_RS15605	0.76	+0.2
3,573,085	+		DDA3937_RS15605	0.76	-2.0
3,573,085	+		DDA3937_RS15605	0.76	-0.2
3,573,085	+		DDA3937_RS15605	0.76	+0.6
3,573,086	-		DDA3937_RS15605	0.76	+2.1
3,573,086	-		DDA3937_RS15605	0.76	-1.1
3,573,086	-		DDA3937_RS15605	0.76	-1.1
3,573,086	-		DDA3937_RS15605	0.76	-1.0
3,573,086	-		DDA3937_RS15605	0.76	-1.3
3,573,144	+		DDA3937_RS15605	0.81	+0.1
3,573,144	+		DDA3937_RS15605	0.81	+0.3
3,573,144	+		DDA3937_RS15605	0.81	+0.1
3,573,145	-		DDA3937_RS15605	0.81	+0.2
3,573,145	-		DDA3937_RS15605	0.81	-1.0
3,573,145	-		DDA3937_RS15605	0.81	-1.0
3,573,145	-				+2.9
3,573,145	-				+2.9
3,573,258	+				-0.8
3,573,258	+				-2.1
3,573,259	-				+1.3
3,573,259	-				+0.9
3,573,262	+				+3.3
3,573,262	+				-2.0
3,573,262	+				-0.4
3,573,262	+				-2.9
3,573,321	-				-0.2
3,573,365	+				+4.3
3,573,366	-				+0.7
3,573,366	-				-0.3
3,573,366	-				+0.4
3,573,367	+				-1.3
3,573,367	+				-0.7
3,573,367	+				+0.4
3,573,367	+				-1.5
3,573,368	-				-0.1
3,573,368	-				+0.2
3,573,368	-				-1.0
3,573,370	-				-0.2
3,573,370	-				+0.3
3,573,384	+				-0.0
3,573,387	-				-1.5
3,573,390	+				-0.8
3,573,390	+				-0.9
3,573,460	-				-0.7
3,573,460	-				+0.9
3,573,467	+				+0.3
3,573,468	-				-0.4
3,573,488	-				-0.5
3,573,498	-				-0.5
3,573,500	+				-0.3
3,573,603	-				+0.8
3,573,733	-				-0.2
3,573,752	+				-0.7
3,573,753	-				+0.0
3,573,816	+				-1.1
3,573,816	+				-1.6
3,573,817	-				-1.0
3,573,817	-				-0.7
3,573,817	-				-1.0
3,573,853	+				+0.2
3,573,853	+				+1.3
3,573,865	+				+0.3
3,573,879	+				+0.3
3,573,922	+				-1.5
3,574,063	+		DDA3937_RS15610	0.16	-1.0
3,574,063	+				+0.3
3,574,063	+		DDA3937_RS15610	0.16	-1.3
3,574,063	+		DDA3937_RS15610	0.16	+0.2
3,574,063	+		DDA3937_RS15610	0.16	-0.3
3,574,064	-		DDA3937_RS15610	0.17	-1.0
3,574,064	-		DDA3937_RS15610	0.17	+0.5
3,574,064	-		DDA3937_RS15610	0.17	-1.6
3,574,064	-				+0.7
3,574,067	+		DDA3937_RS15610	0.17	+3.1
3,574,067	+		DDA3937_RS15610	0.17	-0.9
3,574,067	+		DDA3937_RS15610	0.17	+0.6
3,574,067	+		DDA3937_RS15610	0.17	+0.7
3,574,068	-		DDA3937_RS15610	0.17	+0.3
3,574,068	-		DDA3937_RS15610	0.17	+1.0
3,574,068	-		DDA3937_RS15610	0.17	+0.2
3,574,068	-		DDA3937_RS15610	0.17	+1.0
3,574,068	-		DDA3937_RS15610	0.17	+0.5
3,574,082	-		DDA3937_RS15610	0.18	-0.4
3,574,172	+		DDA3937_RS15610	0.26	+2.7
3,574,173	-		DDA3937_RS15610	0.26	-0.5
3,574,173	-		DDA3937_RS15610	0.26	-1.3
3,574,223	-		DDA3937_RS15610	0.30	-1.0
3,574,303	+		DDA3937_RS15610	0.37	+1.9
3,574,325	+		DDA3937_RS15610	0.39	-0.7
3,574,325	+		DDA3937_RS15610	0.39	+0.6
3,574,325	+		DDA3937_RS15610	0.39	-0.3
3,574,325	+		DDA3937_RS15610	0.39	+0.3
3,574,326	-		DDA3937_RS15610	0.39	-0.1
3,574,326	-		DDA3937_RS15610	0.39	+0.6
3,574,326	-		DDA3937_RS15610	0.39	-0.5
3,574,326	-		DDA3937_RS15610	0.39	-0.3
3,574,326	-		DDA3937_RS15610	0.39	+0.0
3,574,347	+		DDA3937_RS15610	0.41	-0.4
3,574,347	+		DDA3937_RS15610	0.41	+1.3
3,574,425	+		DDA3937_RS15610	0.47	-1.0
3,574,425	+		DDA3937_RS15610	0.47	-0.6
3,574,425	+				+1.9
3,574,426	-		DDA3937_RS15610	0.47	-0.2
3,574,426	-		DDA3937_RS15610	0.47	+0.4
3,574,475	+		DDA3937_RS15610	0.51	+1.3
3,574,475	+		DDA3937_RS15610	0.51	-0.7
3,574,475	+		DDA3937_RS15610	0.51	-0.9
3,574,475	+		DDA3937_RS15610	0.51	-1.3
3,574,475	+		DDA3937_RS15610	0.51	+0.1
3,574,475	+		DDA3937_RS15610	0.51	-0.1
3,574,475	+		DDA3937_RS15610	0.51	-0.8
3,574,475	+		DDA3937_RS15610	0.51	+1.1
3,574,475	+		DDA3937_RS15610	0.51	+1.7
3,574,475	+		DDA3937_RS15610	0.51	+1.6
3,574,475	+		DDA3937_RS15610	0.51	-0.3
3,574,475	+		DDA3937_RS15610	0.51	-0.8
3,574,475	+		DDA3937_RS15610	0.51	+0.5
3,574,475	+		DDA3937_RS15610	0.51	+0.0
3,574,475	+		DDA3937_RS15610	0.51	+0.1
3,574,475	+				-0.7
3,574,475	+		DDA3937_RS15610	0.51	-1.2
3,574,476	-		DDA3937_RS15610	0.51	+0.5
3,574,476	-		DDA3937_RS15610	0.51	+1.1
3,574,476	-		DDA3937_RS15610	0.51	-0.8
3,574,476	-		DDA3937_RS15610	0.51	+5.2
3,574,476	-		DDA3937_RS15610	0.51	-0.7
3,574,476	-		DDA3937_RS15610	0.51	+0.0
3,574,476	-		DDA3937_RS15610	0.51	-1.4
3,574,476	-		DDA3937_RS15610	0.51	+0.2
3,574,476	-		DDA3937_RS15610	0.51	+0.4
3,574,476	-		DDA3937_RS15610	0.51	-0.3
3,574,476	-		DDA3937_RS15610	0.51	-1.8
3,574,476	-		DDA3937_RS15610	0.51	-1.6
3,574,476	-		DDA3937_RS15610	0.51	-0.7
3,574,499	+		DDA3937_RS15610	0.53	-0.3
3,574,499	+		DDA3937_RS15610	0.53	+0.9
3,574,500	-		DDA3937_RS15610	0.54	+1.7
3,574,500	-		DDA3937_RS15610	0.54	-3.0
3,574,500	-		DDA3937_RS15610	0.54	+0.3
3,574,500	-		DDA3937_RS15610	0.54	-0.5
3,574,526	-		DDA3937_RS15610	0.56	+0.4
3,574,545	-		DDA3937_RS15610	0.57	-0.7
3,574,628	-		DDA3937_RS15610	0.64	-2.1
3,574,633	+		DDA3937_RS15610	0.65	+3.0
3,574,633	+		DDA3937_RS15610	0.65	+0.3
3,574,633	+		DDA3937_RS15610	0.65	+0.2
3,574,633	+		DDA3937_RS15610	0.65	-0.1
3,574,634	-		DDA3937_RS15610	0.65	+0.8
3,574,634	-		DDA3937_RS15610	0.65	-1.8
3,574,634	-		DDA3937_RS15610	0.65	+1.3
3,574,634	-		DDA3937_RS15610	0.65	+0.1
3,574,695	+		DDA3937_RS15610	0.70	+0.2
3,574,743	+		DDA3937_RS15610	0.74	+0.5
3,574,744	-		DDA3937_RS15610	0.74	+0.2
3,574,744	-		DDA3937_RS15610	0.74	+0.0
3,574,757	+		DDA3937_RS15610	0.75	-1.2
3,574,758	-		DDA3937_RS15610	0.75	-0.2
3,574,758	-		DDA3937_RS15610	0.75	+0.4
3,574,770	-		DDA3937_RS15610	0.76	-0.2
3,574,800	+		DDA3937_RS15610	0.79	-0.3
3,574,800	+		DDA3937_RS15610	0.79	+1.4
3,574,801	-		DDA3937_RS15610	0.79	-1.5
3,574,801	-		DDA3937_RS15610	0.79	-0.4
3,574,952	+				-0.6
3,574,970	+				-0.7
3,574,971	-				-0.3
3,574,976	+				+0.3
3,574,976	+				+0.5
3,575,096	-				-0.8
3,575,096	-				-1.3
3,575,226	+				+0.3
3,575,226	+				-0.2
3,575,227	-				-1.5
3,575,516	+				+0.9
3,575,516	+				-0.7
3,575,516	+				-0.7
3,575,516	+				-0.1
3,575,516	+				-1.0
3,575,516	+				+0.1
3,575,516	+				+2.1
3,575,516	+				+1.5
3,575,516	+				-0.7
3,575,516	+				+4.0
3,575,516	+				-0.5
3,575,516	+				+0.3
3,575,517	-				-1.3
3,575,517	-				+0.6
3,575,517	-				-1.0
3,575,517	-				-1.1
3,575,517	-				-1.4
3,575,836	-		DDA3937_RS15615	0.27	-0.7
3,575,836	-		DDA3937_RS15615	0.27	-0.1
3,575,979	+		DDA3937_RS15615	0.39	-0.4
3,576,012	+		DDA3937_RS15615	0.42	+0.2
3,576,012	+		DDA3937_RS15615	0.42	+0.0
3,576,013	-		DDA3937_RS15615	0.42	-0.8