Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13265

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,027,045	-		DDA3937_RS13260	0.45	+0.6
3,027,061	+		DDA3937_RS13260	0.46	-0.8
3,027,061	+		DDA3937_RS13260	0.46	+0.9
3,027,062	-		DDA3937_RS13260	0.46	-0.7
3,027,171	+				+2.5
3,027,171	+		DDA3937_RS13260	0.52	-0.3
3,027,172	-		DDA3937_RS13260	0.52	-0.5
3,027,259	+				-0.4
3,027,260	-		DDA3937_RS13260	0.57	-0.4
3,027,260	-		DDA3937_RS13260	0.57	+0.2
3,027,260	-		DDA3937_RS13260	0.57	-0.4
3,027,260	-		DDA3937_RS13260	0.57	+0.7
3,027,452	+		DDA3937_RS13260	0.69	+1.6
3,027,452	+		DDA3937_RS13260	0.69	+1.8
3,027,453	-		DDA3937_RS13260	0.69	+0.1
3,027,453	-		DDA3937_RS13260	0.69	-0.1
3,027,471	+		DDA3937_RS13260	0.70	+0.1
3,027,471	+		DDA3937_RS13260	0.70	+0.2
3,027,471	+		DDA3937_RS13260	0.70	-1.4
3,027,472	-		DDA3937_RS13260	0.70	+0.1
3,027,472	-		DDA3937_RS13260	0.70	+0.5
3,027,556	+		DDA3937_RS13260	0.75	-0.6
3,027,557	-		DDA3937_RS13260	0.75	-0.1
3,027,557	-		DDA3937_RS13260	0.75	-2.1
3,027,598	+		DDA3937_RS13260	0.78	-0.2
3,027,682	+		DDA3937_RS13260	0.83	-1.4
3,027,682	+		DDA3937_RS13260	0.83	-0.0
3,027,682	+		DDA3937_RS13260	0.83	-0.5
3,027,683	-		DDA3937_RS13260	0.83	+0.0
3,027,683	-		DDA3937_RS13260	0.83	-0.8
3,027,683	-		DDA3937_RS13260	0.83	+0.9
3,027,683	-		DDA3937_RS13260	0.83	-0.8
3,027,695	+		DDA3937_RS13260	0.84	-0.8
3,027,695	+		DDA3937_RS13260	0.84	+2.6
3,027,755	+		DDA3937_RS13260	0.87	-0.4
3,027,755	+		DDA3937_RS13260	0.87	-0.0
3,027,756	-		DDA3937_RS13260	0.87	+1.2
3,027,778	+		DDA3937_RS13260	0.89	-1.5
3,027,788	+		DDA3937_RS13260	0.89	-2.1
3,027,788	+		DDA3937_RS13260	0.89	-1.6
3,027,788	+		DDA3937_RS13260	0.89	-0.5
3,027,804	+				-0.6
3,027,921	+				+0.6
3,027,921	+				-0.9
3,027,922	-				+0.9
3,027,922	-				-2.1
3,027,947	+				+1.2
3,027,948	-				-0.4
3,027,948	-				+0.4
3,027,955	+				-1.1
3,027,955	+				+0.7
3,027,955	+				+2.4
3,027,955	+				+1.8
3,027,955	+				+3.9
3,027,955	+				-0.1
3,027,955	+				-0.5
3,027,956	-				+0.3
3,027,956	-				-1.2
3,027,956	-				-0.7
3,027,956	-				-0.5
3,027,956	-				+0.2
3,027,956	-				-0.6
3,027,956	-				+0.9
3,027,956	-				-0.5
3,027,956	-				+1.0
3,027,961	+				+0.2
3,027,961	+				-0.9
3,027,962	-				-0.8
3,028,041	+				-0.5
3,028,042	-				-1.5
3,028,042	-				+0.0
3,028,264	+		DDA3937_RS13265	0.19	-1.0
3,028,264	+		DDA3937_RS13265	0.19	+0.3
3,028,264	+		DDA3937_RS13265	0.19	+0.2
3,028,264	+		DDA3937_RS13265	0.19	-0.3
3,028,264	+		DDA3937_RS13265	0.19	+0.4
3,028,265	-		DDA3937_RS13265	0.19	-0.5
3,028,265	-		DDA3937_RS13265	0.19	+0.2
3,028,265	-		DDA3937_RS13265	0.19	+0.2
3,028,266	+		DDA3937_RS13265	0.19	+0.1
3,028,266	+		DDA3937_RS13265	0.19	-1.6
3,028,266	+		DDA3937_RS13265	0.19	+1.2
3,028,267	-				+1.8
3,028,267	-		DDA3937_RS13265	0.19	-0.0
3,028,267	-		DDA3937_RS13265	0.19	+0.2
3,028,307	+		DDA3937_RS13265	0.22	+0.2
3,028,307	+		DDA3937_RS13265	0.22	-1.4
3,028,313	-		DDA3937_RS13265	0.22	+0.3
3,028,313	-		DDA3937_RS13265	0.22	+0.2
3,028,313	-		DDA3937_RS13265	0.22	-1.2
3,028,441	-		DDA3937_RS13265	0.31	-1.9
3,028,441	-		DDA3937_RS13265	0.31	-1.6
3,028,529	+		DDA3937_RS13265	0.37	+0.9
3,028,584	-		DDA3937_RS13265	0.41	+2.1
3,028,597	+		DDA3937_RS13265	0.41	+0.3
3,028,720	+		DDA3937_RS13265	0.50	-1.4
3,028,778	-		DDA3937_RS13265	0.54	+0.1
3,028,852	+		DDA3937_RS13265	0.59	-0.5
3,028,853	-				-0.4
3,028,853	-		DDA3937_RS13265	0.59	-1.4
3,028,853	-		DDA3937_RS13265	0.59	+0.1
3,028,853	-		DDA3937_RS13265	0.59	-0.6
3,028,853	-		DDA3937_RS13265	0.59	+3.2
3,028,853	-		DDA3937_RS13265	0.59	+0.7
3,028,856	+		DDA3937_RS13265	0.59	+0.6
3,028,856	+		DDA3937_RS13265	0.59	+0.2
3,028,857	-		DDA3937_RS13265	0.59	-1.8
3,028,857	-		DDA3937_RS13265	0.59	-0.2
3,028,857	-		DDA3937_RS13265	0.59	+0.4
3,028,857	-		DDA3937_RS13265	0.59	-0.6
3,028,857	-		DDA3937_RS13265	0.59	+3.5
3,028,857	-		DDA3937_RS13265	0.59	-1.7
3,028,884	+		DDA3937_RS13265	0.61	-2.1
3,028,884	+				-1.4
3,028,885	-		DDA3937_RS13265	0.61	-0.8
3,028,933	+				+1.5
3,028,933	+		DDA3937_RS13265	0.64	+0.5
3,028,934	-		DDA3937_RS13265	0.64	-0.1
3,028,999	-		DDA3937_RS13265	0.69	-0.8
3,029,049	+		DDA3937_RS13265	0.72	-1.1
3,029,049	+		DDA3937_RS13265	0.72	+0.3
3,029,050	-		DDA3937_RS13265	0.72	+0.6
3,029,050	-		DDA3937_RS13265	0.72	+0.8
3,029,115	+		DDA3937_RS13265	0.77	-1.2
3,029,115	+		DDA3937_RS13265	0.77	-0.5
3,029,115	+		DDA3937_RS13265	0.77	-0.8
3,029,115	+		DDA3937_RS13265	0.77	+0.4
3,029,212	+		DDA3937_RS13265	0.83	+0.9
3,029,213	-		DDA3937_RS13265	0.83	-0.7
3,029,213	-		DDA3937_RS13265	0.83	+0.3
3,029,247	-		DDA3937_RS13265	0.86	-0.5
3,029,345	+				-0.4
3,029,345	+				-2.9
3,029,408	-				+0.8
3,029,442	-				+0.8
3,029,442	-				-0.7
3,029,442	-				-1.0
3,029,442	-				-1.3
3,029,449	-				+1.2
3,029,479	+				+1.2
3,029,584	+		DDA3937_RS13270	0.20	-0.7
3,029,584	+		DDA3937_RS13270	0.20	+1.2
3,029,585	-		DDA3937_RS13270	0.20	-0.1
3,029,676	-		DDA3937_RS13270	0.35	+0.7
3,029,688	+				+3.0
3,029,701	+		DDA3937_RS13270	0.39	+1.1
3,029,950	-		DDA3937_RS13270	0.80	-1.5
3,029,996	-		DDA3937_RS13270	0.87	+2.4
3,029,996	-		DDA3937_RS13270	0.87	-0.4
3,029,996	-		DDA3937_RS13270	0.87	-1.4
3,029,996	-		DDA3937_RS13270	0.87	+0.5
3,030,076	-				-1.1
3,030,076	-				-0.4
3,030,107	-				-1.0
3,030,194	+				-0.4
3,030,291	+				+3.8
3,030,291	+				+0.3
3,030,291	+				+0.8
3,030,291	+				-1.2
3,030,292	-				-0.7
3,030,292	-				+0.9
3,030,292	-				-0.5
3,030,292	-				-0.5
3,030,292	-				-0.2
3,030,293	+				-0.2
3,030,293	+				-0.6
3,030,294	-				-0.4
3,030,345	+				-0.6
3,030,345	+				-1.3
3,030,345	+				-1.5
3,030,345	+				+0.4
3,030,345	+				+1.0
3,030,345	+				-1.6
3,030,345	+				-1.6
3,030,345	+				+0.8
3,030,346	-				-0.5
3,030,346	-				-2.6
3,030,346	-				-0.8
3,030,346	-				-2.0
3,030,346	-				-1.8
3,030,346	-				-0.1
3,030,346	-				-2.1
3,030,346	-				-1.0
3,030,346	-				-0.8
3,030,347	+				-0.5
3,030,347	+				-2.2
3,030,347	+				+0.2
3,030,347	+				+0.9
3,030,348	-				-0.5
3,030,348	-				+0.3
3,030,348	-				+1.1
3,030,348	-				-2.2
3,030,457	+		DDA3937_RS13275	0.15	+2.5
3,030,457	+		DDA3937_RS13275	0.15	+0.4