Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12555

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
2,856,087	+		DDA3937_RS12550	0.54	-0.9
2,856,087	+		DDA3937_RS12550	0.54	+1.3
2,856,087	+		DDA3937_RS12550	0.54	-0.8
2,856,088	-		DDA3937_RS12550	0.54	-0.7
2,856,126	+		DDA3937_RS12550	0.56	-0.1
2,856,126	+		DDA3937_RS12550	0.56	-0.7
2,856,126	+		DDA3937_RS12550	0.56	-0.0
2,856,130	+		DDA3937_RS12550	0.56	-0.5
2,856,130	+		DDA3937_RS12550	0.56	-1.0
2,856,131	-		DDA3937_RS12550	0.57	+0.3
2,856,136	+		DDA3937_RS12550	0.57	-0.2
2,856,148	+		DDA3937_RS12550	0.58	+0.4
2,856,151	+		DDA3937_RS12550	0.58	-0.2
2,856,151	+		DDA3937_RS12550	0.58	-1.1
2,856,152	-		DDA3937_RS12550	0.58	-1.4
2,856,182	-		DDA3937_RS12550	0.60	-0.0
2,856,251	-		DDA3937_RS12550	0.64	-0.2
2,856,270	+		DDA3937_RS12550	0.65	+2.1
2,856,270	+		DDA3937_RS12550	0.65	+1.3
2,856,270	+		DDA3937_RS12550	0.65	-0.2
2,856,270	+		DDA3937_RS12550	0.65	+4.1
2,856,270	+		DDA3937_RS12550	0.65	+0.0
2,856,270	+		DDA3937_RS12550	0.65	-1.0
2,856,270	+		DDA3937_RS12550	0.65	+0.3
2,856,270	+		DDA3937_RS12550	0.65	-1.7
2,856,270	+		DDA3937_RS12550	0.65	-1.2
2,856,271	-		DDA3937_RS12550	0.65	-0.5
2,856,271	-		DDA3937_RS12550	0.65	+1.0
2,856,271	-		DDA3937_RS12550	0.65	-1.7
2,856,271	-		DDA3937_RS12550	0.65	-2.4
2,856,271	-		DDA3937_RS12550	0.65	-0.8
2,856,271	-		DDA3937_RS12550	0.65	-0.1
2,856,271	-		DDA3937_RS12550	0.65	-1.7
2,856,295	-		DDA3937_RS12550	0.67	-0.1
2,856,323	+		DDA3937_RS12550	0.68	-0.1
2,856,323	+		DDA3937_RS12550	0.68	-0.9
2,856,324	-		DDA3937_RS12550	0.68	-0.2
2,856,409	+		DDA3937_RS12550	0.74	-0.4
2,856,409	+		DDA3937_RS12550	0.74	-0.9
2,856,410	-		DDA3937_RS12550	0.74	-2.0
2,856,420	+		DDA3937_RS12550	0.74	-1.1
2,856,420	+		DDA3937_RS12550	0.74	-1.0
2,856,421	-		DDA3937_RS12550	0.74	-0.9
2,856,421	-		DDA3937_RS12550	0.74	+1.3
2,856,421	-		DDA3937_RS12550	0.74	+0.4
2,856,421	-		DDA3937_RS12550	0.74	-0.7
2,856,421	-		DDA3937_RS12550	0.74	+0.3
2,856,421	-		DDA3937_RS12550	0.74	-1.3
2,856,421	-		DDA3937_RS12550	0.74	-0.3
2,856,445	+		DDA3937_RS12550	0.76	-1.2
2,856,445	+		DDA3937_RS12550	0.76	-1.4
2,856,446	-		DDA3937_RS12550	0.76	-0.7
2,856,446	-		DDA3937_RS12550	0.76	-0.3
2,856,557	-		DDA3937_RS12550	0.83	+0.2
2,856,557	-		DDA3937_RS12550	0.83	-0.1
2,856,637	+		DDA3937_RS12550	0.87	+1.1
2,856,638	-		DDA3937_RS12550	0.88	+0.3
2,856,650	+		DDA3937_RS12550	0.88	-0.8
2,856,650	+		DDA3937_RS12550	0.88	+0.4
2,856,667	+				-0.5
2,856,667	+		DDA3937_RS12550	0.89	-0.2
2,856,668	-		DDA3937_RS12550	0.89	+0.1
2,856,721	+				+0.1
2,856,735	-				-2.2
2,856,735	-				+0.4
2,856,775	+				+0.3
2,856,818	+				-1.2
2,856,833	+				-0.7
2,856,902	+				-1.4
2,856,914	-				-3.1
2,856,994	+				-1.2
2,857,053	+				-0.5
2,857,067	+				-0.5
2,857,067	+				-0.8
2,857,068	-				+0.3
2,857,068	-				-1.6
2,857,068	-				+0.1
2,857,068	-				+0.3
2,857,068	-				+0.4
2,857,068	-				+0.3
2,857,094	+				-0.7
2,857,094	+				-0.5
2,857,094	+				+0.4
2,857,099	+				+3.1
2,857,099	+				-1.7
2,857,099	+				-1.6
2,857,100	-				+0.1
2,857,137	+				-0.7
2,857,138	-				+0.6
2,857,209	+				-0.8
2,857,210	-				+1.4
2,857,210	-				-1.9
2,857,210	-				+0.7
2,857,210	-				-0.5
2,857,243	+				+0.0
2,857,305	+				+0.5
2,857,305	+				-1.9
2,857,306	-				-0.5
2,857,306	-				-0.9
2,857,318	-		DDA3937_RS12555	0.10	-0.7
2,857,318	-		DDA3937_RS12555	0.10	-0.5
2,857,403	+		DDA3937_RS12555	0.13	+1.6
2,857,432	+		DDA3937_RS12555	0.15	+1.4
2,857,432	+		DDA3937_RS12555	0.15	+0.1
2,857,432	+		DDA3937_RS12555	0.15	+0.6
2,857,432	+				+1.1
2,857,432	+		DDA3937_RS12555	0.15	-0.3
2,857,433	-		DDA3937_RS12555	0.15	+0.1
2,857,433	-		DDA3937_RS12555	0.15	+0.5
2,857,433	-		DDA3937_RS12555	0.15	-1.1
2,857,433	-		DDA3937_RS12555	0.15	+0.6
2,857,433	-		DDA3937_RS12555	0.15	+0.2
2,857,433	-		DDA3937_RS12555	0.15	-1.2
2,857,433	-		DDA3937_RS12555	0.15	-0.1
2,857,454	-		DDA3937_RS12555	0.15	-1.7
2,857,466	+		DDA3937_RS12555	0.16	+0.4
2,857,466	+		DDA3937_RS12555	0.16	-0.7
2,857,466	+		DDA3937_RS12555	0.16	-0.6
2,857,467	-		DDA3937_RS12555	0.16	+0.4
2,857,467	-		DDA3937_RS12555	0.16	+0.4
2,857,476	+		DDA3937_RS12555	0.16	-0.6
2,857,476	+		DDA3937_RS12555	0.16	-0.7
2,857,476	+		DDA3937_RS12555	0.16	+1.2
2,857,477	-		DDA3937_RS12555	0.16	+0.1
2,857,501	-				-0.5
2,857,501	-		DDA3937_RS12555	0.17	-1.0
2,857,643	+		DDA3937_RS12555	0.22	+0.4
2,857,643	+		DDA3937_RS12555	0.22	+0.0
2,857,644	-		DDA3937_RS12555	0.22	+1.3
2,857,689	+		DDA3937_RS12555	0.24	-1.1
2,857,689	+		DDA3937_RS12555	0.24	+0.6
2,857,689	+		DDA3937_RS12555	0.24	+1.6
2,857,690	-		DDA3937_RS12555	0.24	+0.5
2,857,690	-		DDA3937_RS12555	0.24	+0.2
2,857,690	-		DDA3937_RS12555	0.24	-0.6
2,857,690	-		DDA3937_RS12555	0.24	-1.7
2,857,728	+		DDA3937_RS12555	0.26	-1.9
2,857,801	-		DDA3937_RS12555	0.28	-0.9
2,857,802	+		DDA3937_RS12555	0.28	-0.3
2,857,802	+		DDA3937_RS12555	0.28	+0.5
2,857,802	+		DDA3937_RS12555	0.28	+0.2
2,857,802	+		DDA3937_RS12555	0.28	-0.7
2,857,802	+		DDA3937_RS12555	0.28	-1.2
2,857,802	+		DDA3937_RS12555	0.28	+1.1
2,857,802	+				-0.5
2,857,802	+		DDA3937_RS12555	0.28	+0.3
2,857,803	-		DDA3937_RS12555	0.28	-1.2
2,857,803	-		DDA3937_RS12555	0.28	-0.9
2,857,803	-		DDA3937_RS12555	0.28	-0.6
2,857,803	-		DDA3937_RS12555	0.28	-2.1
2,857,803	-		DDA3937_RS12555	0.28	-0.2
2,857,803	-		DDA3937_RS12555	0.28	-0.1
2,857,827	-		DDA3937_RS12555	0.29	+0.0
2,857,827	-		DDA3937_RS12555	0.29	-0.1
2,857,889	+		DDA3937_RS12555	0.32	-0.9
2,857,889	+		DDA3937_RS12555	0.32	+0.8
2,857,890	-		DDA3937_RS12555	0.32	+0.1
2,857,890	-		DDA3937_RS12555	0.32	-0.3
2,857,904	-		DDA3937_RS12555	0.32	-0.9
2,857,904	-		DDA3937_RS12555	0.32	-0.7
2,857,925	-		DDA3937_RS12555	0.33	+3.8
2,857,925	-		DDA3937_RS12555	0.33	-0.3
2,857,959	+		DDA3937_RS12555	0.34	+0.1
2,858,115	+		DDA3937_RS12555	0.40	+0.8
2,858,115	+		DDA3937_RS12555	0.40	-0.1
2,858,164	-		DDA3937_RS12555	0.42	-0.0
2,858,335	-		DDA3937_RS12555	0.48	+0.4
2,858,390	-		DDA3937_RS12555	0.50	+0.4
2,858,390	-		DDA3937_RS12555	0.50	+0.5
2,858,390	-		DDA3937_RS12555	0.50	-2.9
2,858,412	+		DDA3937_RS12555	0.51	-0.4
2,858,412	+		DDA3937_RS12555	0.51	-0.4
2,858,412	+		DDA3937_RS12555	0.51	+0.1
2,858,412	+		DDA3937_RS12555	0.51	-1.0
2,858,412	+		DDA3937_RS12555	0.51	+1.1
2,858,412	+		DDA3937_RS12555	0.51	+0.8
2,858,413	-				+0.1
2,858,413	-		DDA3937_RS12555	0.51	-0.1
2,858,413	-		DDA3937_RS12555	0.51	-0.2
2,858,413	-		DDA3937_RS12555	0.51	-0.1
2,858,413	-		DDA3937_RS12555	0.51	-0.3
2,858,413	-		DDA3937_RS12555	0.51	+1.6
2,858,690	+		DDA3937_RS12555	0.62	+0.8
2,858,741	+		DDA3937_RS12555	0.63	-0.7
2,858,741	+		DDA3937_RS12555	0.63	-0.3
2,858,742	-		DDA3937_RS12555	0.63	-0.6
2,858,789	+		DDA3937_RS12555	0.65	-2.4
2,858,789	+		DDA3937_RS12555	0.65	+1.3
2,859,099	+		DDA3937_RS12555	0.77	-1.1
2,859,159	-		DDA3937_RS12555	0.79	-1.9
2,859,159	-		DDA3937_RS12555	0.79	-0.4
2,859,183	+		DDA3937_RS12555	0.80	-0.2
2,859,262	-		DDA3937_RS12555	0.83	+0.3
2,859,424	+		DDA3937_RS12555	0.89	-0.7
2,859,424	+		DDA3937_RS12555	0.89	+0.3
2,859,424	+		DDA3937_RS12555	0.89	+0.7
2,859,529	+				-0.2
2,859,530	-				-0.2
2,859,659	+				+0.3
2,859,659	+				-0.5
2,859,659	+				+0.7
2,859,678	+				-0.5
2,859,679	-				+1.3
2,859,679	-				-0.8
2,859,704	+				-1.2
2,859,831	-				+0.6
2,859,838	+				-0.9
2,859,842	+				-2.1
2,859,842	+				+0.6
2,859,842	+				-0.1
2,859,842	+				+0.6
2,859,842	+				+1.4
2,859,842	+				-0.0
2,859,842	+				+0.1
2,859,843	-				+0.1
2,859,843	-				+0.1
2,859,843	-				+0.8
2,859,849	+				-2.1
2,859,849	+				-0.1
2,859,849	+				+0.5
2,859,850	-				+0.3
2,859,850	-				+2.2
2,859,854	-				-0.5
2,859,854	-				+0.5
2,859,870	-				-2.4
2,859,870	-				+0.0
2,859,907	-				-0.1
2,859,907	-				-1.5
2,859,927	+				+7.1
2,859,928	-				+1.1
2,860,033	+				-0.3
2,860,033	+				-0.6
2,860,034	-				-0.0
2,860,034	-				-0.2
2,860,036	-				-2.2
2,860,072	+				+0.4
2,860,073	-				-0.0
2,860,074	+				-0.2
2,860,074	+				-0.6
2,860,080	+				-0.5
2,860,081	-				-0.1
2,860,118	+				-1.3
2,860,127	+				+4.6
2,860,132	+				-0.7
2,860,132	+				-0.3
2,860,132	+				-0.4
2,860,132	+				+0.8
2,860,132	+				-0.4
2,860,133	-				-0.4
2,860,133	-				+0.7
2,860,151	-				+0.4
2,860,154	+				+0.7
2,860,168	+				-1.1
2,860,168	+				-1.9
2,860,168	+				-0.8
2,860,168	+				-0.8
2,860,169	-				+1.9
2,860,169	-				+2.9
2,860,172	+				-0.6
2,860,173	-				-0.3
2,860,182	-				+0.4
2,860,182	-				+0.9
2,860,182	-				-0.5
2,860,240	-				-1.1
2,860,277	+				-1.7
2,860,278	-				-1.2
2,860,278	-				+0.8
2,860,356	+		DDA3937_RS12560	0.20	-1.5
2,860,356	+		DDA3937_RS12560	0.20	+1.5
2,860,356	+		DDA3937_RS12560	0.20	+0.1
2,860,357	-				+0.1
2,860,357	-		DDA3937_RS12560	0.21	+1.1
2,860,357	-		DDA3937_RS12560	0.21	-0.5
2,860,467	+		DDA3937_RS12560	0.39	-1.7
2,860,467	+		DDA3937_RS12560	0.39	+0.4
2,860,467	+		DDA3937_RS12560	0.39	-2.2
2,860,467	+		DDA3937_RS12560	0.39	-1.6
2,860,468	-		DDA3937_RS12560	0.39	+0.4
2,860,468	-		DDA3937_RS12560	0.39	+0.7
2,860,469	+		DDA3937_RS12560	0.39	+0.1
2,860,469	+		DDA3937_RS12560	0.39	+0.1
2,860,469	+		DDA3937_RS12560	0.39	+0.4
2,860,469	+		DDA3937_RS12560	0.39	+0.1
2,860,469	+		DDA3937_RS12560	0.39	-1.1
2,860,469	+		DDA3937_RS12560	0.39	+1.0
2,860,469	+		DDA3937_RS12560	0.39	+0.3
2,860,470	-		DDA3937_RS12560	0.39	-0.1
2,860,470	-		DDA3937_RS12560	0.39	-0.4
2,860,470	-		DDA3937_RS12560	0.39	+0.1
2,860,470	-		DDA3937_RS12560	0.39	-2.1
2,860,470	-		DDA3937_RS12560	0.39	-1.5
2,860,474	+		DDA3937_RS12560	0.40	-0.8
2,860,474	+		DDA3937_RS12560	0.40	-1.8
2,860,475	-		DDA3937_RS12560	0.40	-0.6
2,860,491	-		DDA3937_RS12560	0.42	+0.2
2,860,503	+		DDA3937_RS12560	0.44	+0.2
2,860,527	+		DDA3937_RS12560	0.48	+0.8
2,860,528	-		DDA3937_RS12560	0.48	-0.0
2,860,528	-		DDA3937_RS12560	0.48	-0.4
2,860,590	+		DDA3937_RS12560	0.59	-0.7
2,860,590	+		DDA3937_RS12560	0.59	-1.6
2,860,590	+		DDA3937_RS12560	0.59	+0.5
2,860,591	-		DDA3937_RS12560	0.59	-1.7
2,860,611	+		DDA3937_RS12560	0.62	-1.0
2,860,611	+		DDA3937_RS12560	0.62	+0.7
2,860,612	-		DDA3937_RS12560	0.62	+0.4
2,860,612	-		DDA3937_RS12560	0.62	+1.1
2,860,663	-		DDA3937_RS12560	0.70	-0.5
2,860,698	+		DDA3937_RS12560	0.76	+0.3
2,860,698	+		DDA3937_RS12560	0.76	-1.4
2,860,698	+		DDA3937_RS12560	0.76	-0.2
2,860,698	+		DDA3937_RS12560	0.76	-1.3
2,860,699	-		DDA3937_RS12560	0.76	-0.7
2,860,699	-		DDA3937_RS12560	0.76	-0.9
2,860,699	-				+0.1