Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10630

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
2,392,084	+		DDA3937_RS10620	0.83	-1.0
2,392,085	-		DDA3937_RS10620	0.84	+0.6
2,392,085	-		DDA3937_RS10620	0.84	-0.1
2,392,086	+		DDA3937_RS10620	0.84	-0.2
2,392,086	+		DDA3937_RS10620	0.84	-0.0
2,392,086	+		DDA3937_RS10620	0.84	-0.0
2,392,086	+		DDA3937_RS10620	0.84	-0.2
2,392,086	+		DDA3937_RS10620	0.84	-0.0
2,392,087	-		DDA3937_RS10620	0.84	-0.6
2,392,087	-		DDA3937_RS10620	0.84	-0.2
2,392,087	-		DDA3937_RS10620	0.84	-0.9
2,392,087	-		DDA3937_RS10620	0.84	-0.7
2,392,087	-		DDA3937_RS10620	0.84	+1.0
2,392,087	-		DDA3937_RS10620	0.84	+0.4
2,392,087	-		DDA3937_RS10620	0.84	+0.2
2,392,096	+		DDA3937_RS10620	0.85	+1.5
2,392,097	-		DDA3937_RS10620	0.85	-1.4
2,392,097	-		DDA3937_RS10620	0.85	-1.6
2,392,173	+				-0.6
2,392,263	+				-0.7
2,392,290	-				-0.3
2,392,293	+				+4.3
2,392,343	+				+2.2
2,392,345	+				+0.3
2,392,345	+				-0.6
2,392,345	+				-1.6
2,392,345	+				+0.2
2,392,424	-				-1.0
2,392,486	+		DDA3937_RS10625	0.13	-0.1
2,392,487	-		DDA3937_RS10625	0.13	+0.2
2,392,530	+		DDA3937_RS10625	0.23	+0.1
2,392,617	-		DDA3937_RS10625	0.42	+0.2
2,392,665	+		DDA3937_RS10625	0.52	-0.8
2,392,665	+		DDA3937_RS10625	0.52	+1.0
2,392,673	-		DDA3937_RS10625	0.54	+0.9
2,392,740	+		DDA3937_RS10625	0.68	+0.6
2,392,740	+		DDA3937_RS10625	0.68	-1.6
2,392,765	+		DDA3937_RS10625	0.74	-0.6
2,392,766	-		DDA3937_RS10625	0.74	+1.4
2,392,773	+		DDA3937_RS10625	0.76	-0.5
2,392,773	+		DDA3937_RS10625	0.76	-0.1
2,392,774	-		DDA3937_RS10625	0.76	-2.2
2,392,785	+		DDA3937_RS10625	0.78	-2.6
2,392,785	+		DDA3937_RS10625	0.78	-1.9
2,392,786	-		DDA3937_RS10625	0.78	-0.4
2,392,786	-		DDA3937_RS10625	0.78	-0.3
2,392,807	+		DDA3937_RS10625	0.83	-1.3
2,392,808	-				+3.5
2,392,813	+		DDA3937_RS10625	0.84	+0.6
2,392,814	-		DDA3937_RS10625	0.85	-0.4
2,392,814	-		DDA3937_RS10625	0.85	-0.1
2,392,814	-		DDA3937_RS10625	0.85	-0.1
2,392,819	+				-0.1
2,392,819	+		DDA3937_RS10625	0.86	+1.0
2,392,819	+				-0.1
2,392,819	+		DDA3937_RS10625	0.86	-0.3
2,392,819	+		DDA3937_RS10625	0.86	+0.5
2,392,820	-		DDA3937_RS10625	0.86	-0.6
2,392,836	+		DDA3937_RS10625	0.89	-0.7
2,392,836	+		DDA3937_RS10625	0.89	-1.1
2,392,836	+		DDA3937_RS10625	0.89	+1.1
2,392,837	-		DDA3937_RS10625	0.90	-1.1
2,392,837	-		DDA3937_RS10625	0.90	-0.6
2,392,837	-		DDA3937_RS10625	0.90	+0.4
2,392,837	-		DDA3937_RS10625	0.90	-0.8
2,392,911	+				-2.1
2,392,911	+				+1.8
2,392,911	+				+0.6
2,392,911	+				+0.8
2,392,911	+				-0.3
2,392,912	-				-1.4
2,392,912	-				+0.3
2,392,912	-				-1.7
2,392,912	-				-0.3
2,392,912	-				-0.9
2,392,912	-				+0.9
2,392,912	-				-0.1
2,392,914	+				+0.2
2,392,914	+				-0.8
2,392,914	+				-0.1
2,392,914	+				+1.1
2,392,915	-				-2.2
2,392,915	-				+0.2
2,392,926	+				-1.3
2,393,078	+				-0.3
2,393,149	+		DDA3937_RS10630	0.14	-1.9
2,393,150	-		DDA3937_RS10630	0.14	-0.1
2,393,150	-		DDA3937_RS10630	0.14	+1.0
2,393,150	-		DDA3937_RS10630	0.14	+0.3
2,393,150	-		DDA3937_RS10630	0.14	+0.8
2,393,210	+		DDA3937_RS10630	0.20	-1.1
2,393,210	+		DDA3937_RS10630	0.20	+0.1
2,393,256	+		DDA3937_RS10630	0.24	+1.4
2,393,257	-		DDA3937_RS10630	0.24	-0.0
2,393,257	-		DDA3937_RS10630	0.24	+0.6
2,393,257	-				-0.0
2,393,320	+		DDA3937_RS10630	0.30	-2.0
2,393,320	+		DDA3937_RS10630	0.30	-1.9
2,393,320	+		DDA3937_RS10630	0.30	-0.7
2,393,321	-		DDA3937_RS10630	0.31	+1.4
2,393,321	-		DDA3937_RS10630	0.31	-2.5
2,393,321	-		DDA3937_RS10630	0.31	+0.1
2,393,321	-		DDA3937_RS10630	0.31	-1.5
2,393,321	-		DDA3937_RS10630	0.31	-0.6
2,393,534	+		DDA3937_RS10630	0.52	-2.7
2,393,585	+		DDA3937_RS10630	0.57	+1.7
2,393,619	+		DDA3937_RS10630	0.60	-0.4
2,393,620	-		DDA3937_RS10630	0.60	-0.5
2,393,679	+		DDA3937_RS10630	0.66	-0.0
2,393,680	-				-0.0
2,393,680	-		DDA3937_RS10630	0.66	+0.4
2,393,680	-		DDA3937_RS10630	0.66	-1.2
2,393,680	-		DDA3937_RS10630	0.66	+1.5
2,393,680	-		DDA3937_RS10630	0.66	+0.0
2,393,682	+		DDA3937_RS10630	0.66	-1.2
2,393,683	-		DDA3937_RS10630	0.66	+2.1
2,393,683	-		DDA3937_RS10630	0.66	-0.5
2,393,697	+		DDA3937_RS10630	0.68	+0.7
2,393,698	-		DDA3937_RS10630	0.68	-0.0
2,393,719	+		DDA3937_RS10630	0.70	-0.9
2,393,719	+		DDA3937_RS10630	0.70	-0.6
2,393,719	+		DDA3937_RS10630	0.70	-1.4
2,393,719	+		DDA3937_RS10630	0.70	-0.0
2,393,719	+				+2.0
2,393,720	-		DDA3937_RS10630	0.70	-0.6
2,393,720	-		DDA3937_RS10630	0.70	-1.4
2,393,720	-		DDA3937_RS10630	0.70	+0.4
2,393,720	-		DDA3937_RS10630	0.70	-3.0
2,393,720	-		DDA3937_RS10630	0.70	+0.1
2,393,720	-		DDA3937_RS10630	0.70	-1.2
2,393,720	-		DDA3937_RS10630	0.70	-0.2
2,393,720	-		DDA3937_RS10630	0.70	-0.4
2,393,720	-		DDA3937_RS10630	0.70	+3.6
2,393,722	+		DDA3937_RS10630	0.70	+0.5
2,393,722	+		DDA3937_RS10630	0.70	-0.0
2,393,746	+		DDA3937_RS10630	0.72	-1.7
2,393,747	-		DDA3937_RS10630	0.72	-0.6
2,393,747	-		DDA3937_RS10630	0.72	-0.6
2,393,763	+		DDA3937_RS10630	0.74	-0.0
2,393,763	+		DDA3937_RS10630	0.74	-0.9
2,393,763	+		DDA3937_RS10630	0.74	-1.6
2,393,763	+		DDA3937_RS10630	0.74	+4.3
2,393,764	-		DDA3937_RS10630	0.74	-1.6
2,393,764	-		DDA3937_RS10630	0.74	-0.4
2,393,764	-		DDA3937_RS10630	0.74	-0.8
2,393,764	-		DDA3937_RS10630	0.74	-1.2
2,393,785	+		DDA3937_RS10630	0.76	-1.4
2,393,786	-		DDA3937_RS10630	0.76	-0.3
2,393,930	+				-2.9
2,393,934	-				-1.0
2,393,973	-				-2.4
2,393,975	+				-0.4
2,393,975	+				-1.6
2,393,976	-				-1.4
2,393,976	-				-0.8
2,393,976	-				-1.0
2,394,020	+				-0.8
2,394,039	+				-1.1
2,394,040	-				-0.7
2,394,042	+				-0.4
2,394,137	-				-0.0
2,394,138	+				-0.9
2,394,145	-				+0.1
2,394,151	-				+2.5
2,394,154	+				-1.8
2,394,154	+				+0.7
2,394,155	-				+1.0
2,394,155	-				-0.0
2,394,156	+				-1.8
2,394,156	+				-1.5
2,394,156	+				-0.6
2,394,156	+				-0.3
2,394,156	+				+0.6
2,394,157	-				-0.1
2,394,157	-				-0.0
2,394,157	-				-0.6
2,394,157	-				-2.4
2,394,163	-				+1.2
2,394,168	+				+3.4
2,394,200	-				+3.7
2,394,242	-				+1.0
2,394,252	+				-0.4
2,394,252	+				-1.5
2,394,252	+				-1.0
2,394,253	-				-1.4
2,394,253	-				+1.5
2,394,253	-				-2.4
2,394,253	-				+7.1
2,394,253	-				-0.4
2,394,253	-				+0.5
2,394,286	+				-0.4
2,394,286	+				+1.0
2,394,287	-				-1.2
2,394,290	+				+2.0
2,394,291	-				+0.3
2,394,339	+				+1.0
2,394,363	+				-0.5
2,394,363	+				-0.5
2,394,364	-				-0.5
2,394,404	-		DDA3937_RS10635	0.12	-0.1
2,394,407	+		DDA3937_RS10635	0.13	-0.5
2,394,408	-		DDA3937_RS10635	0.13	-0.8
2,394,425	-		DDA3937_RS10635	0.14	+0.1
2,394,433	+				+0.5
2,394,434	-		DDA3937_RS10635	0.15	-1.6
2,394,435	+		DDA3937_RS10635	0.15	-0.1
2,394,435	+		DDA3937_RS10635	0.15	-0.7
2,394,477	+		DDA3937_RS10635	0.20	-0.7
2,394,478	-		DDA3937_RS10635	0.20	-1.4
2,394,479	+		DDA3937_RS10635	0.20	+0.1
2,394,479	+		DDA3937_RS10635	0.20	+0.5
2,394,479	+		DDA3937_RS10635	0.20	-0.2
2,394,496	-		DDA3937_RS10635	0.22	+0.2
2,394,640	+		DDA3937_RS10635	0.37	+0.2
2,394,640	+		DDA3937_RS10635	0.37	+1.3
2,394,641	-		DDA3937_RS10635	0.37	-0.8
2,394,645	+		DDA3937_RS10635	0.38	+0.6
2,394,645	+		DDA3937_RS10635	0.38	+1.2
2,394,675	+		DDA3937_RS10635	0.41	+0.3
2,394,676	-		DDA3937_RS10635	0.41	-1.5
2,394,678	-				+3.7
2,394,770	-		DDA3937_RS10635	0.51	-2.5
2,394,777	+		DDA3937_RS10635	0.52	+0.3
2,394,899	-		DDA3937_RS10635	0.65	-1.0
2,394,899	-		DDA3937_RS10635	0.65	-1.8
2,394,929	+		DDA3937_RS10635	0.68	-0.8
2,394,930	-		DDA3937_RS10635	0.68	-1.4
2,394,952	+		DDA3937_RS10635	0.70	+0.1
2,394,952	+		DDA3937_RS10635	0.70	-0.5
2,394,952	+		DDA3937_RS10635	0.70	-0.6
2,394,953	-		DDA3937_RS10635	0.70	-1.8
2,394,953	-		DDA3937_RS10635	0.70	+0.2
2,394,953	-				+1.0
2,394,985	+		DDA3937_RS10635	0.74	-2.6
2,394,986	-		DDA3937_RS10635	0.74	-1.2
2,394,992	+		DDA3937_RS10635	0.75	+1.2