Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09385

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
2,114,762	-				+1.2
2,114,834	+		DDA3937_RS09380	0.16	+1.3
2,114,834	+		DDA3937_RS09380	0.16	+0.1
2,114,835	-		DDA3937_RS09380	0.16	+0.7
2,114,835	-		DDA3937_RS09380	0.16	-1.2
2,114,835	-		DDA3937_RS09380	0.16	-2.0
2,114,835	-		DDA3937_RS09380	0.16	+0.6
2,114,835	-		DDA3937_RS09380	0.16	-0.8
2,114,891	+				+2.4
2,114,891	+		DDA3937_RS09380	0.23	-0.2
2,114,891	+		DDA3937_RS09380	0.23	-1.3
2,114,891	+		DDA3937_RS09380	0.23	+1.6
2,114,892	-		DDA3937_RS09380	0.23	+0.9
2,114,892	-		DDA3937_RS09380	0.23	+0.0
2,114,892	-		DDA3937_RS09380	0.23	+1.8
2,114,949	+		DDA3937_RS09380	0.31	+0.1
2,114,950	-		DDA3937_RS09380	0.31	+1.2
2,114,950	-		DDA3937_RS09380	0.31	-1.4
2,115,011	-		DDA3937_RS09380	0.39	-0.2
2,115,113	+		DDA3937_RS09380	0.53	+0.7
2,115,113	+		DDA3937_RS09380	0.53	-0.6
2,115,113	+		DDA3937_RS09380	0.53	-0.0
2,115,183	+		DDA3937_RS09380	0.62	-0.1
2,115,185	+		DDA3937_RS09380	0.62	+0.1
2,115,185	+		DDA3937_RS09380	0.62	+0.3
2,115,186	-		DDA3937_RS09380	0.62	+0.4
2,115,186	-		DDA3937_RS09380	0.62	+0.0
2,115,186	-		DDA3937_RS09380	0.62	-0.4
2,115,186	-		DDA3937_RS09380	0.62	-2.4
2,115,186	-		DDA3937_RS09380	0.62	-1.0
2,115,186	-		DDA3937_RS09380	0.62	-0.1
2,115,186	-		DDA3937_RS09380	0.62	+0.0
2,115,221	+		DDA3937_RS09380	0.67	-1.6
2,115,221	+		DDA3937_RS09380	0.67	+0.7
2,115,221	+		DDA3937_RS09380	0.67	-0.9
2,115,222	-		DDA3937_RS09380	0.67	+0.0
2,115,222	-		DDA3937_RS09380	0.67	-1.2
2,115,222	-		DDA3937_RS09380	0.67	+0.1
2,115,222	-		DDA3937_RS09380	0.67	-0.2
2,115,242	+		DDA3937_RS09380	0.70	-0.1
2,115,243	-		DDA3937_RS09380	0.70	-1.6
2,115,243	-		DDA3937_RS09380	0.70	+0.5
2,115,243	-		DDA3937_RS09380	0.70	+0.1
2,115,275	+		DDA3937_RS09380	0.74	+0.0
2,115,275	+		DDA3937_RS09380	0.74	+1.4
2,115,275	+		DDA3937_RS09380	0.74	+0.4
2,115,275	+		DDA3937_RS09380	0.74	-2.2
2,115,275	+		DDA3937_RS09380	0.74	-0.6
2,115,275	+		DDA3937_RS09380	0.74	-0.5
2,115,275	+		DDA3937_RS09380	0.74	-1.0
2,115,276	-		DDA3937_RS09380	0.74	+0.2
2,115,276	-		DDA3937_RS09380	0.74	+0.2
2,115,276	-		DDA3937_RS09380	0.74	+0.6
2,115,278	+		DDA3937_RS09380	0.74	-1.0
2,115,278	+		DDA3937_RS09380	0.74	-0.4
2,115,305	+		DDA3937_RS09380	0.78	-0.1
2,115,305	+		DDA3937_RS09380	0.78	-0.1
2,115,305	+		DDA3937_RS09380	0.78	+0.3
2,115,306	-		DDA3937_RS09380	0.78	+1.2
2,115,306	-		DDA3937_RS09380	0.78	-1.3
2,115,331	+		DDA3937_RS09380	0.81	-0.6
2,115,332	-		DDA3937_RS09380	0.81	+0.0
2,115,366	-		DDA3937_RS09380	0.86	-0.6
2,115,366	-		DDA3937_RS09380	0.86	+0.0
2,115,366	-		DDA3937_RS09380	0.86	+0.6
2,115,371	+		DDA3937_RS09380	0.87	-1.8
2,115,372	-		DDA3937_RS09380	0.87	+0.6
2,115,393	+		DDA3937_RS09380	0.90	+0.3
2,115,394	-		DDA3937_RS09380	0.90	-1.0
2,115,496	+				+2.2
2,115,496	+				+0.4
2,115,496	+				+0.4
2,115,500	+				-1.0
2,115,500	+				+0.4
2,115,500	+				-1.0
2,115,501	-				-1.8
2,115,501	-				-1.6
2,115,501	-				+0.1
2,115,517	+				-1.0
2,115,562	+				+0.9
2,115,671	-				-1.0
2,115,671	-				-1.5
2,115,873	+		DDA3937_RS09385	0.16	+0.8
2,115,873	+		DDA3937_RS09385	0.16	-0.4
2,115,873	+		DDA3937_RS09385	0.16	+0.2
2,115,873	+		DDA3937_RS09385	0.16	-0.5
2,115,873	+		DDA3937_RS09385	0.16	-3.6
2,115,874	-		DDA3937_RS09385	0.16	-1.8
2,115,874	-		DDA3937_RS09385	0.16	+0.4
2,115,874	-		DDA3937_RS09385	0.16	-0.9
2,115,874	-		DDA3937_RS09385	0.16	-0.7
2,115,906	+		DDA3937_RS09385	0.19	-0.7
2,115,907	-		DDA3937_RS09385	0.19	-0.6
2,115,907	-		DDA3937_RS09385	0.19	-0.8
2,115,907	-		DDA3937_RS09385	0.19	-2.8
2,115,965	-		DDA3937_RS09385	0.23	+0.1
2,115,979	-		DDA3937_RS09385	0.24	+0.1
2,116,059	-		DDA3937_RS09385	0.29	-0.5
2,116,059	-		DDA3937_RS09385	0.29	+0.8
2,116,059	-		DDA3937_RS09385	0.29	+1.3
2,116,059	-		DDA3937_RS09385	0.29	+0.8
2,116,065	-		DDA3937_RS09385	0.30	-1.2
2,116,065	-		DDA3937_RS09385	0.30	+0.0
2,116,065	-		DDA3937_RS09385	0.30	-0.4
2,116,256	-		DDA3937_RS09385	0.44	-0.3
2,116,261	+		DDA3937_RS09385	0.44	-2.8
2,116,262	-		DDA3937_RS09385	0.44	+0.2
2,116,262	-				-0.6
2,116,262	-		DDA3937_RS09385	0.44	+0.0
2,116,262	-		DDA3937_RS09385	0.44	+0.6
2,116,500	-		DDA3937_RS09385	0.61	-2.3
2,116,500	-		DDA3937_RS09385	0.61	-0.3
2,116,500	-		DDA3937_RS09385	0.61	-1.2
2,116,500	-		DDA3937_RS09385	0.61	+0.6
2,116,500	-		DDA3937_RS09385	0.61	+0.5
2,116,500	-		DDA3937_RS09385	0.61	-0.8
2,116,544	-		DDA3937_RS09385	0.64	-0.8
2,116,544	-		DDA3937_RS09385	0.64	-0.6
2,116,624	+		DDA3937_RS09385	0.70	-0.9
2,116,625	-		DDA3937_RS09385	0.70	+0.1
2,116,625	-		DDA3937_RS09385	0.70	-1.1
2,116,625	-		DDA3937_RS09385	0.70	-0.2
2,116,625	-		DDA3937_RS09385	0.70	-0.2
2,116,625	-		DDA3937_RS09385	0.70	-0.3
2,116,625	-		DDA3937_RS09385	0.70	-0.2
2,116,625	-		DDA3937_RS09385	0.70	-0.4
2,116,654	+		DDA3937_RS09385	0.72	+0.4
2,116,680	+		DDA3937_RS09385	0.74	-0.5
2,116,681	-		DDA3937_RS09385	0.74	-0.2
2,116,817	+				-1.6
2,116,818	-		DDA3937_RS09385	0.84	-1.2
2,116,846	+		DDA3937_RS09385	0.86	-1.2
2,116,846	+		DDA3937_RS09385	0.86	-1.6
2,116,846	+		DDA3937_RS09385	0.86	-0.2
2,116,846	+		DDA3937_RS09385	0.86	+0.5
2,116,846	+		DDA3937_RS09385	0.86	+0.1
2,116,847	-		DDA3937_RS09385	0.86	-1.8
2,116,847	-		DDA3937_RS09385	0.86	-1.1
2,116,847	-		DDA3937_RS09385	0.86	-2.6
2,116,847	-		DDA3937_RS09385	0.86	+0.0
2,117,040	-				+0.2
2,117,049	-				-0.1
2,117,049	-				-0.6
2,117,058	+				-0.6
2,117,058	+				+1.2
2,117,058	+				+0.1
2,117,058	+				+0.0
2,117,058	+				+3.3
2,117,059	-				+1.3
2,117,059	-				-2.2
2,117,059	-				-0.1
2,117,059	-				-3.3
2,117,059	-				-0.4
2,117,091	+				+0.2
2,117,093	+				-0.3
2,117,093	+				-0.7
2,117,094	-				+0.2
2,117,094	-				-0.4
2,117,094	-				-1.2
2,117,094	-				-1.6
2,117,129	+				-0.4
2,117,132	-				+1.2
2,117,136	+				-0.6
2,117,231	+				-1.0
2,117,231	+				+0.0
2,117,232	-				-1.2
2,117,234	+				+0.1
2,117,234	+				-0.8
2,117,235	-				+0.5
2,117,241	-				-0.8
2,117,241	-				-1.0
2,117,270	+				-2.2
2,117,270	+				-2.4
2,117,271	-				+0.8
2,117,271	-				+0.5
2,117,300	+				+0.8
2,117,344	-				-1.0
2,117,626	+		DDA3937_RS09390	0.27	+0.0
2,117,635	+		DDA3937_RS09390	0.28	-0.6
2,117,635	+		DDA3937_RS09390	0.28	+0.0
2,117,636	-		DDA3937_RS09390	0.28	-1.8
2,117,636	-		DDA3937_RS09390	0.28	-0.2
2,117,804	+		DDA3937_RS09390	0.43	-0.4
2,117,804	+		DDA3937_RS09390	0.43	+0.3
2,117,804	+		DDA3937_RS09390	0.43	-1.0
2,117,804	+		DDA3937_RS09390	0.43	+0.1
2,117,805	-		DDA3937_RS09390	0.43	-0.3
2,117,809	-		DDA3937_RS09390	0.44	-0.3
2,117,835	+		DDA3937_RS09390	0.46	-1.2
2,117,835	+		DDA3937_RS09390	0.46	-1.4
2,117,835	+		DDA3937_RS09390	0.46	-0.6
2,117,835	+		DDA3937_RS09390	0.46	+3.2
2,117,836	-		DDA3937_RS09390	0.46	-2.0
2,117,836	-		DDA3937_RS09390	0.46	-1.0
2,117,836	-		DDA3937_RS09390	0.46	+0.8
2,117,963	+		DDA3937_RS09390	0.57	+0.0
2,117,967	+		DDA3937_RS09390	0.58	+0.0
2,117,968	-		DDA3937_RS09390	0.58	-0.2