Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08685

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
1,960,102	+				-0.2
1,960,102	+				+1.8
1,960,103	-				-0.4
1,960,122	+				-1.6
1,960,122	+				-0.5
1,960,128	+		DDA3937_RS08680	0.10	-0.6
1,960,129	-		DDA3937_RS08680	0.10	-0.5
1,960,129	-		DDA3937_RS08680	0.10	-0.1
1,960,135	+		DDA3937_RS08680	0.11	+0.3
1,960,135	+		DDA3937_RS08680	0.11	-0.6
1,960,136	-		DDA3937_RS08680	0.11	+2.1
1,960,315	+		DDA3937_RS08680	0.31	+1.2
1,960,316	-		DDA3937_RS08680	0.31	-0.8
1,960,316	-		DDA3937_RS08680	0.31	-2.2
1,960,316	-		DDA3937_RS08680	0.31	+0.3
1,960,316	-		DDA3937_RS08680	0.31	-0.3
1,960,316	-		DDA3937_RS08680	0.31	-2.1
1,960,456	+		DDA3937_RS08680	0.47	-0.3
1,960,456	+		DDA3937_RS08680	0.47	-0.5
1,960,459	+		DDA3937_RS08680	0.48	+0.1
1,960,460	-		DDA3937_RS08680	0.48	+0.5
1,960,527	+		DDA3937_RS08680	0.55	+0.8
1,960,527	+		DDA3937_RS08680	0.55	+1.7
1,960,527	+		DDA3937_RS08680	0.55	-0.7
1,960,528	-		DDA3937_RS08680	0.56	+0.4
1,960,592	+		DDA3937_RS08680	0.63	-1.4
1,960,592	+		DDA3937_RS08680	0.63	-0.2
1,960,592	+		DDA3937_RS08680	0.63	-2.2
1,960,592	+		DDA3937_RS08680	0.63	-1.4
1,960,592	+		DDA3937_RS08680	0.63	-1.1
1,960,593	-		DDA3937_RS08680	0.63	+1.3
1,960,593	-		DDA3937_RS08680	0.63	-0.2
1,960,675	-		DDA3937_RS08680	0.72	+2.4
1,960,799	+		DDA3937_RS08680	0.86	+0.6
1,960,799	+		DDA3937_RS08680	0.86	-0.8
1,960,867	+				-0.1
1,960,867	+				+0.2
1,960,867	+				+0.2
1,960,867	+				-0.7
1,960,867	+				-1.5
1,960,867	+				+0.9
1,960,868	-				-0.3
1,960,888	-				-0.6
1,960,978	+				-0.7
1,960,979	-				+0.9
1,961,023	+				+3.3
1,961,023	+				+1.1
1,961,023	+				-1.6
1,961,023	+				+0.5
1,961,023	+				+0.2
1,961,023	+				-1.7
1,961,024	-				+0.2
1,961,089	+		DDA3937_RS08685	0.11	-0.5
1,961,090	-				+1.7
1,961,090	-		DDA3937_RS08685	0.12	+0.3
1,961,231	+		DDA3937_RS08685	0.29	-0.5
1,961,231	+		DDA3937_RS08685	0.29	-0.5
1,961,232	-		DDA3937_RS08685	0.29	-1.2
1,961,317	-		DDA3937_RS08685	0.40	-2.6
1,961,345	+		DDA3937_RS08685	0.43	+0.1
1,961,345	+		DDA3937_RS08685	0.43	+0.7
1,961,345	+		DDA3937_RS08685	0.43	-2.5
1,961,346	-		DDA3937_RS08685	0.44	-1.0
1,961,359	+		DDA3937_RS08685	0.45	+0.7
1,961,359	+		DDA3937_RS08685	0.45	-0.8
1,961,360	-		DDA3937_RS08685	0.45	+1.4
1,961,360	-		DDA3937_RS08685	0.45	-0.4
1,961,364	+		DDA3937_RS08685	0.46	-1.4
1,961,364	+		DDA3937_RS08685	0.46	-0.5
1,961,365	-		DDA3937_RS08685	0.46	+0.8
1,961,366	+		DDA3937_RS08685	0.46	-1.1
1,961,366	+		DDA3937_RS08685	0.46	+1.4
1,961,367	-		DDA3937_RS08685	0.46	+0.0
1,961,367	-		DDA3937_RS08685	0.46	-1.1
1,961,367	-		DDA3937_RS08685	0.46	-2.1
1,961,457	-		DDA3937_RS08685	0.57	-1.7
1,961,496	+		DDA3937_RS08685	0.62	-0.3
1,961,576	-		DDA3937_RS08685	0.72	+0.1
1,961,586	-		DDA3937_RS08685	0.74	-0.6
1,961,646	-		DDA3937_RS08685	0.81	+0.6
1,961,681	+		DDA3937_RS08685	0.85	+2.9
1,961,682	-		DDA3937_RS08685	0.86	+2.2
1,961,834	-				-0.4
1,961,859	+				+0.0
1,961,888	+				-0.4
1,961,888	+				-0.9
1,961,888	+				-0.1
1,961,888	+				-0.7
1,961,888	+				-1.0
1,961,889	-				+0.4
1,961,889	-				-0.1
1,961,889	-				-1.2
1,961,889	-				-0.7
1,961,891	+				+0.5
1,961,891	+				+0.6
1,961,891	+				-0.2
1,961,891	+				+0.5
1,961,891	+				-1.0
1,961,892	-				-0.5
1,961,908	-				-0.3
1,961,908	-				-0.6
1,961,914	+				-2.1
1,961,915	-				-0.9
1,961,915	-				+1.1
1,961,923	+				+0.3
1,961,937	-				-2.5
1,961,937	-				+1.1
1,961,937	-				+0.1
1,961,985	+				-0.5
1,961,986	-				+0.1
1,961,994	+				+0.1
1,961,994	+				+0.0
1,961,994	+				+0.1
1,961,994	+				+0.6
1,961,995	-				-2.7
1,961,995	-				-0.7
1,961,995	-				+1.6
1,961,995	-				-1.5
1,962,025	+				-1.1
1,962,026	-				+0.1
1,962,026	-				-2.2
1,962,027	+				+0.8
1,962,027	+				-1.3
1,962,027	+				-0.3
1,962,027	+				-0.5
1,962,027	+				-2.2
1,962,028	-				-2.1
1,962,028	-				+0.2
1,962,028	-				-1.1
1,962,028	-				+0.8
1,962,028	-				+0.0
1,962,028	-				-1.4
1,962,028	-				-2.5
1,962,028	-				+0.5
1,962,028	-				-3.1
1,962,031	+				-0.5
1,962,031	+				-0.1
1,962,031	+				+1.4
1,962,032	-				-1.5
1,962,032	-				+0.6
1,962,130	+		DDA3937_RS08690	0.14	-1.3
1,962,130	+		DDA3937_RS08690	0.14	-0.2
1,962,130	+		DDA3937_RS08690	0.14	+0.1
1,962,136	+		DDA3937_RS08690	0.15	+0.1
1,962,136	+		DDA3937_RS08690	0.15	+0.1
1,962,136	+		DDA3937_RS08690	0.15	+2.3
1,962,136	+		DDA3937_RS08690	0.15	-0.1
1,962,136	+		DDA3937_RS08690	0.15	+0.7
1,962,137	-		DDA3937_RS08690	0.15	+2.1
1,962,137	-		DDA3937_RS08690	0.15	-1.3
1,962,137	-		DDA3937_RS08690	0.15	-0.1
1,962,137	-				+0.1
1,962,137	-		DDA3937_RS08690	0.15	+0.9
1,962,137	-		DDA3937_RS08690	0.15	-0.1
1,962,179	+		DDA3937_RS08690	0.21	-0.5
1,962,180	-		DDA3937_RS08690	0.21	-2.1
1,962,281	+		DDA3937_RS08690	0.34	-0.8
1,962,322	+		DDA3937_RS08690	0.39	+0.8
1,962,322	+		DDA3937_RS08690	0.39	+2.1
1,962,323	-		DDA3937_RS08690	0.40	-1.1
1,962,338	+		DDA3937_RS08690	0.42	+0.1
1,962,338	+		DDA3937_RS08690	0.42	-0.1
1,962,338	+		DDA3937_RS08690	0.42	+5.1
1,962,339	-		DDA3937_RS08690	0.42	-1.5
1,962,339	-		DDA3937_RS08690	0.42	+0.7
1,962,339	-		DDA3937_RS08690	0.42	-0.6
1,962,339	-		DDA3937_RS08690	0.42	-1.8
1,962,339	-		DDA3937_RS08690	0.42	-0.9
1,962,543	+		DDA3937_RS08690	0.68	+0.1
1,962,544	-		DDA3937_RS08690	0.68	-0.4
1,962,544	-		DDA3937_RS08690	0.68	-2.7
1,962,572	-		DDA3937_RS08690	0.72	-0.2
1,962,601	-		DDA3937_RS08690	0.76	-0.6
1,962,674	+		DDA3937_RS08690	0.85	+1.3
1,962,675	-		DDA3937_RS08690	0.86	+0.6
1,962,766	+				+1.2
1,962,767	-				-0.4
1,962,783	-				-0.9