Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07490

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
1,690,099	+		DDA3937_RS07485	0.51	+0.4
1,690,099	+		DDA3937_RS07485	0.51	+0.8
1,690,099	+		DDA3937_RS07485	0.51	+0.2
1,690,100	-		DDA3937_RS07485	0.51	+1.3
1,690,100	-		DDA3937_RS07485	0.51	+2.6
1,690,197	+		DDA3937_RS07485	0.61	+0.4
1,690,197	+		DDA3937_RS07485	0.61	-0.9
1,690,198	-		DDA3937_RS07485	0.61	-0.1
1,690,198	-		DDA3937_RS07485	0.61	-0.5
1,690,198	-		DDA3937_RS07485	0.61	-1.8
1,690,198	-		DDA3937_RS07485	0.61	+0.5
1,690,198	-		DDA3937_RS07485	0.61	-1.0
1,690,269	+		DDA3937_RS07485	0.69	+0.0
1,690,269	+		DDA3937_RS07485	0.69	+0.3
1,690,269	+		DDA3937_RS07485	0.69	-1.3
1,690,269	+		DDA3937_RS07485	0.69	+0.8
1,690,269	+		DDA3937_RS07485	0.69	+0.9
1,690,270	-		DDA3937_RS07485	0.69	-1.4
1,690,309	+		DDA3937_RS07485	0.73	-0.5
1,690,309	+		DDA3937_RS07485	0.73	+0.2
1,690,309	+		DDA3937_RS07485	0.73	-1.3
1,690,309	+		DDA3937_RS07485	0.73	+0.2
1,690,309	+		DDA3937_RS07485	0.73	+0.2
1,690,309	+		DDA3937_RS07485	0.73	-1.9
1,690,309	+		DDA3937_RS07485	0.73	+2.0
1,690,310	-		DDA3937_RS07485	0.73	-1.8
1,690,310	-		DDA3937_RS07485	0.73	+0.3
1,690,310	-		DDA3937_RS07485	0.73	+1.2
1,690,310	-		DDA3937_RS07485	0.73	-0.2
1,690,459	+		DDA3937_RS07485	0.89	-0.4
1,690,459	+				-1.4
1,690,459	+		DDA3937_RS07485	0.89	-0.5
1,690,460	-		DDA3937_RS07485	0.89	-0.6
1,690,474	-				+0.6
1,690,668	+				-2.0
1,690,669	-				-1.2
1,690,738	+				-0.8
1,690,738	+				-0.7
1,690,795	+				+2.1
1,691,021	+				-1.3
1,691,126	-				-2.2
1,691,142	-		DDA3937_RS07490	0.10	-1.4
1,691,159	+		DDA3937_RS07490	0.12	+0.5
1,691,159	+		DDA3937_RS07490	0.12	-1.5
1,691,160	-		DDA3937_RS07490	0.12	-0.8
1,691,368	+		DDA3937_RS07490	0.28	-0.1
1,691,368	+		DDA3937_RS07490	0.28	-1.4
1,691,369	-		DDA3937_RS07490	0.28	+0.2
1,691,369	-		DDA3937_RS07490	0.28	+1.6
1,691,369	-		DDA3937_RS07490	0.28	-1.2
1,691,369	-		DDA3937_RS07490	0.28	-0.6
1,691,398	+				-0.8
1,691,398	+		DDA3937_RS07490	0.30	-0.1
1,691,399	-		DDA3937_RS07490	0.30	+0.3
1,691,399	-		DDA3937_RS07490	0.30	-1.5
1,691,429	+		DDA3937_RS07490	0.32	-1.7
1,691,433	-		DDA3937_RS07490	0.33	-1.8
1,691,635	+		DDA3937_RS07490	0.48	-0.8
1,691,645	+		DDA3937_RS07490	0.49	-2.2
1,691,646	-		DDA3937_RS07490	0.49	-1.7
1,691,715	+		DDA3937_RS07490	0.54	+0.2
1,691,715	+		DDA3937_RS07490	0.54	-1.3
1,691,715	+		DDA3937_RS07490	0.54	-0.5
1,691,716	-		DDA3937_RS07490	0.54	-0.6
1,691,716	-		DDA3937_RS07490	0.54	-1.5
1,691,716	-		DDA3937_RS07490	0.54	+0.4
1,691,716	-		DDA3937_RS07490	0.54	-0.9
1,691,861	+		DDA3937_RS07490	0.65	+0.2
1,691,861	+		DDA3937_RS07490	0.65	+0.5
1,691,862	-		DDA3937_RS07490	0.65	+0.7
1,691,862	-		DDA3937_RS07490	0.65	-2.0
1,691,883	+		DDA3937_RS07490	0.67	-0.3
1,691,883	+		DDA3937_RS07490	0.67	-1.0
1,691,958	+		DDA3937_RS07490	0.72	-0.4
1,691,958	+		DDA3937_RS07490	0.72	+1.2
1,691,958	+		DDA3937_RS07490	0.72	-0.3
1,691,959	-		DDA3937_RS07490	0.73	-1.3
1,691,959	-		DDA3937_RS07490	0.73	+0.2
1,691,994	+		DDA3937_RS07490	0.75	-1.2
1,692,174	-		DDA3937_RS07490	0.89	-0.3
1,692,196	+				-0.8
1,692,196	+				+0.4
1,692,197	-				-0.3
1,692,200	-				-1.1
1,692,200	-				-1.9
1,692,270	+				+0.2
1,692,319	-				+1.5
1,692,319	-				-0.4
1,692,335	-				-1.3
1,692,337	+				+2.6
1,692,337	+				-0.5
1,692,337	+				+0.3
1,692,337	+				-0.1
1,692,337	+				-0.2
1,692,337	+				-0.7
1,692,337	+				-0.2
1,692,337	+				+0.4
1,692,338	-				-1.2
1,692,338	-				-2.4
1,692,338	-				-1.2
1,692,386	-				-0.1
1,692,406	+				-0.0
1,692,406	+				+1.4
1,692,406	+				+0.1
1,692,407	-				-1.0
1,692,407	-				-1.2
1,692,475	+				-1.8
1,692,475	+				-2.4
1,692,475	+				-0.4
1,692,476	-				-0.8
1,692,524	+				+1.2
1,692,525	-				+0.1
1,692,532	+				-0.4
1,692,532	+				-2.8
1,692,533	-				+0.3
1,692,621	+				-0.2
1,692,622	-				+0.4
1,692,708	-		DDA3937_RS07495	0.16	-0.3
1,692,715	-		DDA3937_RS07495	0.17	+2.7
1,692,914	+		DDA3937_RS07495	0.43	-0.4
1,692,914	+		DDA3937_RS07495	0.43	-0.6
1,692,914	+		DDA3937_RS07495	0.43	+1.8
1,692,914	+		DDA3937_RS07495	0.43	+2.3
1,692,914	+		DDA3937_RS07495	0.43	-1.1
1,692,914	+		DDA3937_RS07495	0.43	-1.2
1,692,915	-		DDA3937_RS07495	0.43	-0.5
1,692,915	-		DDA3937_RS07495	0.43	+0.9
1,692,915	-		DDA3937_RS07495	0.43	-0.9
1,692,915	-		DDA3937_RS07495	0.43	-0.8
1,692,915	-		DDA3937_RS07495	0.43	-0.3
1,692,915	-		DDA3937_RS07495	0.43	+0.5
1,692,915	-		DDA3937_RS07495	0.43	+1.5
1,693,069	-		DDA3937_RS07495	0.63	+0.3
1,693,069	-		DDA3937_RS07495	0.63	-1.3
1,693,093	-		DDA3937_RS07495	0.66	-0.8
1,693,093	-		DDA3937_RS07495	0.66	+0.1
1,693,125	+		DDA3937_RS07495	0.70	+0.4
1,693,125	+		DDA3937_RS07495	0.70	-0.9
1,693,125	+		DDA3937_RS07495	0.70	+0.8
1,693,125	+		DDA3937_RS07495	0.70	-0.2
1,693,125	+		DDA3937_RS07495	0.70	-0.0
1,693,126	-		DDA3937_RS07495	0.70	-1.3
1,693,126	-		DDA3937_RS07495	0.70	+0.0
1,693,182	-		DDA3937_RS07495	0.78	-0.7
1,693,189	+		DDA3937_RS07495	0.79	-3.0
1,693,189	+		DDA3937_RS07495	0.79	-1.7
1,693,189	+		DDA3937_RS07495	0.79	+1.2
1,693,189	+		DDA3937_RS07495	0.79	-0.0
1,693,189	+		DDA3937_RS07495	0.79	-1.8
1,693,190	-		DDA3937_RS07495	0.79	-1.2
1,693,190	-		DDA3937_RS07495	0.79	+0.4
1,693,206	-		DDA3937_RS07495	0.81	-0.3
1,693,266	+		DDA3937_RS07495	0.89	-1.4
1,693,267	-		DDA3937_RS07495	0.89	+0.2
1,693,282	-				+0.1
1,693,283	+				-1.2
1,693,283	+				-1.7
1,693,284	-				+1.5
1,693,284	-				-0.2
1,693,284	-				-0.1
1,693,284	-				-0.0
1,693,284	-				-0.1