Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04465 and DDA3937_RS04470 are separated by 536 nucleotides DDA3937_RS04470 and DDA3937_RS04475 are separated by 309 nucleotides DDA3937_RS04475 and DDA3937_RS04480 are separated by 41 nucleotides
DDA3937_RS04465: DDA3937_RS04465 - enoyl-CoA hydratase/isomerase family protein, at 986,387 to 987,352
_RS04465
DDA3937_RS04470: DDA3937_RS04470 - helix-turn-helix transcriptional regulator, at 987,889 to 988,443
_RS04470
DDA3937_RS04475: DDA3937_RS04475 - PTS glucose transporter subunit IIA, at 988,753 to 989,262
_RS04475
DDA3937_RS04480: DDA3937_RS04480 - phosphoenolpyruvate-protein phosphotransferase PtsI, at 989,304 to 991,031
_RS04480
Position (kb) 987
988
989 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 986.901 kb on + strand, within DDA3937_RS04465 at 986.901 kb on + strand, within DDA3937_RS04465 at 986.902 kb on - strand, within DDA3937_RS04465 at 986.902 kb on - strand, within DDA3937_RS04465 at 986.902 kb on - strand, within DDA3937_RS04465 at 986.902 kb on - strand, within DDA3937_RS04465 at 986.902 kb on - strand, within DDA3937_RS04465 at 986.905 kb on + strand, within DDA3937_RS04465 at 986.905 kb on + strand, within DDA3937_RS04465 at 986.905 kb on + strand, within DDA3937_RS04465 at 986.905 kb on + strand at 986.953 kb on + strand, within DDA3937_RS04465 at 986.968 kb on + strand, within DDA3937_RS04465 at 986.969 kb on - strand at 986.971 kb on - strand, within DDA3937_RS04465 at 986.971 kb on - strand, within DDA3937_RS04465 at 987.018 kb on - strand, within DDA3937_RS04465 at 987.051 kb on + strand, within DDA3937_RS04465 at 987.057 kb on + strand, within DDA3937_RS04465 at 987.057 kb on + strand, within DDA3937_RS04465 at 987.058 kb on - strand, within DDA3937_RS04465 at 987.058 kb on - strand, within DDA3937_RS04465 at 987.058 kb on - strand, within DDA3937_RS04465 at 987.058 kb on - strand, within DDA3937_RS04465 at 987.132 kb on - strand, within DDA3937_RS04465 at 987.137 kb on + strand, within DDA3937_RS04465 at 987.137 kb on + strand, within DDA3937_RS04465 at 987.137 kb on + strand, within DDA3937_RS04465 at 987.137 kb on + strand at 987.137 kb on + strand, within DDA3937_RS04465 at 987.138 kb on - strand, within DDA3937_RS04465 at 987.138 kb on - strand, within DDA3937_RS04465 at 987.138 kb on - strand, within DDA3937_RS04465 at 987.138 kb on - strand, within DDA3937_RS04465 at 987.138 kb on - strand, within DDA3937_RS04465 at 987.138 kb on - strand, within DDA3937_RS04465 at 987.275 kb on + strand at 987.275 kb on + strand at 987.276 kb on - strand at 987.322 kb on + strand at 987.323 kb on - strand at 987.323 kb on - strand at 987.332 kb on + strand at 987.332 kb on + strand at 987.333 kb on - strand at 987.333 kb on - strand at 987.354 kb on + strand at 987.355 kb on - strand at 987.355 kb on - strand at 987.355 kb on - strand at 987.357 kb on + strand at 987.357 kb on + strand at 987.358 kb on - strand at 987.358 kb on - strand at 987.358 kb on - strand at 987.373 kb on + strand at 987.378 kb on + strand at 987.378 kb on + strand at 987.499 kb on + strand at 987.499 kb on + strand at 987.500 kb on - strand at 987.508 kb on + strand at 987.509 kb on - strand at 987.514 kb on + strand at 987.515 kb on - strand at 987.515 kb on - strand at 987.524 kb on + strand at 987.543 kb on - strand at 987.701 kb on + strand at 987.701 kb on + strand at 987.701 kb on + strand at 987.701 kb on + strand at 987.701 kb on + strand at 987.701 kb on + strand at 987.701 kb on + strand at 987.702 kb on - strand at 987.702 kb on - strand at 987.702 kb on - strand at 987.702 kb on - strand at 987.702 kb on - strand at 987.705 kb on + strand at 987.705 kb on + strand at 987.705 kb on + strand at 987.705 kb on + strand at 987.705 kb on + strand at 987.705 kb on + strand at 987.705 kb on + strand at 987.706 kb on - strand at 987.706 kb on - strand at 987.706 kb on - strand at 987.706 kb on - strand at 987.819 kb on - strand at 987.847 kb on + strand at 987.848 kb on - strand at 987.848 kb on - strand at 987.849 kb on + strand at 987.850 kb on - strand at 987.850 kb on - strand at 987.854 kb on - strand at 987.854 kb on - strand at 988.003 kb on + strand, within DDA3937_RS04470 at 988.013 kb on + strand, within DDA3937_RS04470 at 988.013 kb on + strand, within DDA3937_RS04470 at 988.013 kb on + strand, within DDA3937_RS04470 at 988.014 kb on - strand, within DDA3937_RS04470 at 988.014 kb on - strand, within DDA3937_RS04470 at 988.014 kb on - strand, within DDA3937_RS04470 at 988.046 kb on + strand, within DDA3937_RS04470 at 988.060 kb on - strand, within DDA3937_RS04470 at 988.127 kb on - strand, within DDA3937_RS04470 at 988.130 kb on + strand, within DDA3937_RS04470 at 988.130 kb on + strand, within DDA3937_RS04470 at 988.130 kb on + strand, within DDA3937_RS04470 at 988.130 kb on + strand, within DDA3937_RS04470 at 988.130 kb on + strand, within DDA3937_RS04470 at 988.130 kb on + strand, within DDA3937_RS04470 at 988.130 kb on + strand, within DDA3937_RS04470 at 988.130 kb on + strand, within DDA3937_RS04470 at 988.130 kb on + strand, within DDA3937_RS04470 at 988.130 kb on + strand, within DDA3937_RS04470 at 988.130 kb on + strand, within DDA3937_RS04470 at 988.131 kb on - strand, within DDA3937_RS04470 at 988.131 kb on - strand, within DDA3937_RS04470 at 988.131 kb on - strand, within DDA3937_RS04470 at 988.131 kb on - strand, within DDA3937_RS04470 at 988.196 kb on + strand, within DDA3937_RS04470 at 988.197 kb on - strand, within DDA3937_RS04470 at 988.197 kb on - strand, within DDA3937_RS04470 at 988.197 kb on - strand, within DDA3937_RS04470 at 988.312 kb on - strand, within DDA3937_RS04470 at 988.368 kb on + strand, within DDA3937_RS04470 at 988.369 kb on - strand, within DDA3937_RS04470 at 988.371 kb on + strand, within DDA3937_RS04470 at 988.371 kb on + strand, within DDA3937_RS04470 at 988.382 kb on - strand, within DDA3937_RS04470 at 988.431 kb on + strand at 988.437 kb on + strand at 988.437 kb on + strand at 988.437 kb on + strand at 988.438 kb on - strand at 988.438 kb on - strand at 988.459 kb on + strand at 988.481 kb on + strand at 988.481 kb on + strand at 988.482 kb on - strand at 988.482 kb on - strand at 988.500 kb on + strand at 988.501 kb on - strand at 988.501 kb on - strand at 988.501 kb on - strand at 988.501 kb on - strand at 988.515 kb on + strand at 988.515 kb on + strand at 988.531 kb on + strand at 988.532 kb on - strand at 988.561 kb on + strand at 988.562 kb on - strand at 988.562 kb on - strand at 988.586 kb on + strand at 988.586 kb on + strand at 988.586 kb on + strand at 988.586 kb on + strand at 988.587 kb on - strand at 988.587 kb on - strand at 988.621 kb on + strand at 988.622 kb on - strand at 988.622 kb on - strand at 988.622 kb on - strand at 988.622 kb on - strand at 988.639 kb on + strand at 988.639 kb on + strand at 988.640 kb on - strand at 988.643 kb on + strand at 988.643 kb on + strand at 988.643 kb on + strand at 988.643 kb on + strand at 988.643 kb on + strand at 988.643 kb on + strand at 988.643 kb on + strand at 988.643 kb on + strand at 988.643 kb on + strand at 988.644 kb on - strand at 988.644 kb on - strand at 988.644 kb on - strand at 988.644 kb on - strand at 988.644 kb on - strand at 988.644 kb on - strand at 988.645 kb on + strand at 988.646 kb on - strand at 988.646 kb on - strand at 988.646 kb on - strand at 988.646 kb on - strand at 988.685 kb on + strand at 988.685 kb on + strand at 988.685 kb on + strand at 988.704 kb on - strand at 988.719 kb on + strand at 988.720 kb on - strand at 988.721 kb on + strand at 988.721 kb on + strand at 988.721 kb on + strand at 988.722 kb on - strand at 988.722 kb on - strand at 988.738 kb on + strand at 988.739 kb on - strand at 988.739 kb on - strand at 988.739 kb on - strand at 988.754 kb on + strand at 989.041 kb on - strand, within DDA3937_RS04475 at 989.274 kb on - strand at 989.284 kb on - strand at 989.284 kb on - strand at 989.338 kb on - strand at 989.350 kb on - strand at 989.350 kb on - strand at 989.408 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 986,901 + DDA3937_RS04465 0.53 -0.2 986,901 + DDA3937_RS04465 0.53 +0.7 986,902 - DDA3937_RS04465 0.53 -0.3 986,902 - DDA3937_RS04465 0.53 +1.4 986,902 - DDA3937_RS04465 0.53 -0.6 986,902 - DDA3937_RS04465 0.53 -0.7 986,902 - DDA3937_RS04465 0.53 +0.0 986,905 + DDA3937_RS04465 0.54 +1.7 986,905 + DDA3937_RS04465 0.54 +0.6 986,905 + DDA3937_RS04465 0.54 -0.2 986,905 + +0.4 986,953 + DDA3937_RS04465 0.59 -0.3 986,968 + DDA3937_RS04465 0.60 -0.8 986,969 - +0.4 986,971 - DDA3937_RS04465 0.60 +0.4 986,971 - DDA3937_RS04465 0.60 -2.2 987,018 - DDA3937_RS04465 0.65 +0.3 987,051 + DDA3937_RS04465 0.69 -1.7 987,057 + DDA3937_RS04465 0.69 +1.7 987,057 + DDA3937_RS04465 0.69 +0.1 987,058 - DDA3937_RS04465 0.69 -0.5 987,058 - DDA3937_RS04465 0.69 -0.9 987,058 - DDA3937_RS04465 0.69 +0.7 987,058 - DDA3937_RS04465 0.69 +1.4 987,132 - DDA3937_RS04465 0.77 -0.3 987,137 + DDA3937_RS04465 0.78 +0.7 987,137 + DDA3937_RS04465 0.78 -0.8 987,137 + DDA3937_RS04465 0.78 -1.2 987,137 + +0.7 987,137 + DDA3937_RS04465 0.78 -0.6 987,138 - DDA3937_RS04465 0.78 +0.1 987,138 - DDA3937_RS04465 0.78 -0.4 987,138 - DDA3937_RS04465 0.78 +0.7 987,138 - DDA3937_RS04465 0.78 -2.6 987,138 - DDA3937_RS04465 0.78 -0.2 987,138 - DDA3937_RS04465 0.78 +0.5 987,275 + -0.6 987,275 + -0.4 987,276 - -0.1 987,322 + -1.2 987,323 - +1.2 987,323 - -1.8 987,332 + +0.4 987,332 + -2.5 987,333 - -0.6 987,333 - +0.4 987,354 + +0.4 987,355 - -0.9 987,355 - -0.2 987,355 - -0.2 987,357 + -0.6 987,357 + +0.0 987,358 - -0.7 987,358 - -1.1 987,358 - +1.0 987,373 + -0.8 987,378 + -0.4 987,378 + -0.4 987,499 + +0.0 987,499 + +0.3 987,500 - -2.2 987,508 + -2.5 987,509 - -0.2 987,514 + -1.2 987,515 - +1.2 987,515 - -0.6 987,524 + -0.6 987,543 - -1.6 987,701 + -0.5 987,701 + -1.2 987,701 + +1.4 987,701 + -1.4 987,701 + -0.4 987,701 + -1.2 987,701 + +0.4 987,702 - -1.7 987,702 - -0.5 987,702 - -0.2 987,702 - +0.0 987,702 - +0.5 987,705 + +0.7 987,705 + +1.1 987,705 + -0.8 987,705 + -1.2 987,705 + -1.2 987,705 + +0.1 987,705 + -1.0 987,706 - -0.8 987,706 - +1.3 987,706 - -0.2 987,706 - +0.2 987,819 - +0.4 987,847 + -1.1 987,848 - -0.6 987,848 - -0.1 987,849 + -1.0 987,850 - +0.1 987,850 - -0.2 987,854 - -0.2 987,854 - +1.4 988,003 + DDA3937_RS04470 0.21 +1.8 988,013 + DDA3937_RS04470 0.22 +1.2 988,013 + DDA3937_RS04470 0.22 +0.1 988,013 + DDA3937_RS04470 0.22 +3.4 988,014 - DDA3937_RS04470 0.23 +0.2 988,014 - DDA3937_RS04470 0.23 -0.9 988,014 - DDA3937_RS04470 0.23 -1.2 988,046 + DDA3937_RS04470 0.28 +0.8 988,060 - DDA3937_RS04470 0.31 -0.2 988,127 - DDA3937_RS04470 0.43 +0.2 988,130 + DDA3937_RS04470 0.43 +1.1 988,130 + DDA3937_RS04470 0.43 +0.3 988,130 + DDA3937_RS04470 0.43 -2.5 988,130 + DDA3937_RS04470 0.43 +0.9 988,130 + DDA3937_RS04470 0.43 -0.0 988,130 + DDA3937_RS04470 0.43 +3.2 988,130 + DDA3937_RS04470 0.43 +0.4 988,130 + DDA3937_RS04470 0.43 +0.8 988,130 + DDA3937_RS04470 0.43 +0.1 988,130 + DDA3937_RS04470 0.43 +1.2 988,130 + DDA3937_RS04470 0.43 +0.1 988,131 - DDA3937_RS04470 0.44 -1.8 988,131 - DDA3937_RS04470 0.44 -1.0 988,131 - DDA3937_RS04470 0.44 +1.7 988,131 - DDA3937_RS04470 0.44 -1.4 988,196 + DDA3937_RS04470 0.55 -0.6 988,197 - DDA3937_RS04470 0.55 +1.0 988,197 - DDA3937_RS04470 0.55 +0.7 988,197 - DDA3937_RS04470 0.55 -0.7 988,312 - DDA3937_RS04470 0.76 -0.2 988,368 + DDA3937_RS04470 0.86 +0.2 988,369 - DDA3937_RS04470 0.86 -1.0 988,371 + DDA3937_RS04470 0.87 -0.2 988,371 + DDA3937_RS04470 0.87 -0.5 988,382 - DDA3937_RS04470 0.89 -0.7 988,431 + -2.6 988,437 + +0.9 988,437 + -1.3 988,437 + -1.2 988,438 - +0.1 988,438 - -2.8 988,459 + +0.7 988,481 + +0.4 988,481 + +0.2 988,482 - -1.1 988,482 - +0.9 988,500 + -0.6 988,501 - +1.0 988,501 - +1.5 988,501 - +3.0 988,501 - +1.0 988,515 + -1.4 988,515 + -0.2 988,531 + +0.2 988,532 - +4.6 988,561 + -0.4 988,562 - +1.5 988,562 - -0.6 988,586 + -1.1 988,586 + -0.7 988,586 + +1.6 988,586 + -1.6 988,587 - -1.0 988,587 - -0.7 988,621 + +1.0 988,622 - +0.1 988,622 - +0.6 988,622 - +0.8 988,622 - -0.7 988,639 + -1.2 988,639 + -0.2 988,640 - +0.7 988,643 + +0.1 988,643 + +1.4 988,643 + +0.3 988,643 + +0.9 988,643 + +1.1 988,643 + -1.4 988,643 + +1.2 988,643 + -1.5 988,643 + +0.3 988,644 - -2.4 988,644 - +1.8 988,644 - -1.3 988,644 - -0.4 988,644 - +0.7 988,644 - -0.0 988,645 + -1.2 988,646 - +0.1 988,646 - +0.8 988,646 - -0.8 988,646 - -1.2 988,685 + -1.0 988,685 + -0.6 988,685 + -0.7 988,704 - -1.8 988,719 + -0.9 988,720 - +1.3 988,721 + -1.2 988,721 + -1.7 988,721 + +0.1 988,722 - -1.8 988,722 - -1.6 988,738 + -0.8 988,739 - -1.4 988,739 - -0.6 988,739 - -2.2 988,754 + -0.5 989,041 - DDA3937_RS04475 0.56 +0.6 989,274 - +0.7 989,284 - -0.8 989,284 - +0.1 989,338 - -1.1 989,350 - -1.4 989,350 - -0.8 989,408 - -3.5
Or see this region's nucleotide sequence