Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04415

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS04405 and DDA3937_RS04410 are separated by 35 nucleotidesDDA3937_RS04410 and DDA3937_RS04415 are separated by 15 nucleotidesDDA3937_RS04415 and DDA3937_RS04420 are separated by 226 nucleotides DDA3937_RS04405: DDA3937_RS04405 - GNAT family N-acetyltransferase, at 973,263 to 973,676 _RS04405 DDA3937_RS04410: DDA3937_RS04410 - PAS and helix-turn-helix domain-containing protein, at 973,712 to 974,401 _RS04410 DDA3937_RS04415: DDA3937_RS04415 - cytosine permease, at 974,417 to 975,712 _RS04415 DDA3937_RS04420: DDA3937_RS04420 - Dyp-type peroxidase, at 975,939 to 976,838 _RS04420 Position (kb) 974 975 976Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 973.453 kb on - strand, within DDA3937_RS04405at 973.463 kb on + strand, within DDA3937_RS04405at 973.464 kb on - strand, within DDA3937_RS04405at 973.478 kb on + strand, within DDA3937_RS04405at 973.479 kb on - strand, within DDA3937_RS04405at 973.479 kb on - strand, within DDA3937_RS04405at 973.544 kb on + strand, within DDA3937_RS04405at 973.551 kb on + strand, within DDA3937_RS04405at 973.551 kb on + strand, within DDA3937_RS04405at 973.551 kb on + strand, within DDA3937_RS04405at 973.552 kb on - strand, within DDA3937_RS04405at 973.552 kb on - strand, within DDA3937_RS04405at 973.552 kb on - strand, within DDA3937_RS04405at 973.552 kb on - strand, within DDA3937_RS04405at 973.552 kb on - strand, within DDA3937_RS04405at 973.552 kb on - strand, within DDA3937_RS04405at 973.566 kb on - strand, within DDA3937_RS04405at 973.603 kb on - strand, within DDA3937_RS04405at 973.612 kb on - strand, within DDA3937_RS04405at 973.637 kb on + strandat 973.637 kb on + strandat 973.637 kb on + strandat 973.637 kb on + strandat 973.637 kb on + strandat 973.637 kb on + strandat 973.638 kb on - strandat 973.638 kb on - strandat 973.638 kb on - strandat 973.638 kb on - strandat 973.638 kb on - strandat 973.706 kb on - strandat 973.742 kb on + strandat 973.743 kb on - strandat 973.743 kb on - strandat 973.745 kb on - strandat 973.816 kb on + strand, within DDA3937_RS04410at 973.820 kb on + strand, within DDA3937_RS04410at 973.821 kb on - strand, within DDA3937_RS04410at 973.844 kb on + strand, within DDA3937_RS04410at 973.847 kb on - strand, within DDA3937_RS04410at 973.997 kb on + strand, within DDA3937_RS04410at 974.013 kb on + strand, within DDA3937_RS04410at 974.112 kb on + strand, within DDA3937_RS04410at 974.117 kb on + strand, within DDA3937_RS04410at 974.158 kb on + strand, within DDA3937_RS04410at 974.158 kb on + strand, within DDA3937_RS04410at 974.159 kb on - strand, within DDA3937_RS04410at 974.169 kb on + strand, within DDA3937_RS04410at 974.289 kb on - strand, within DDA3937_RS04410at 974.330 kb on + strand, within DDA3937_RS04410at 974.360 kb on - strandat 974.391 kb on + strandat 974.395 kb on + strandat 974.395 kb on + strandat 974.395 kb on + strandat 974.396 kb on - strandat 974.396 kb on - strandat 974.400 kb on - strandat 974.527 kb on + strandat 974.527 kb on + strandat 974.751 kb on + strand, within DDA3937_RS04415at 974.751 kb on + strand, within DDA3937_RS04415at 974.803 kb on - strand, within DDA3937_RS04415at 974.838 kb on + strand, within DDA3937_RS04415at 974.839 kb on - strand, within DDA3937_RS04415at 974.839 kb on - strand, within DDA3937_RS04415at 974.839 kb on - strand, within DDA3937_RS04415at 974.839 kb on - strand, within DDA3937_RS04415at 974.847 kb on + strand, within DDA3937_RS04415at 974.855 kb on - strand, within DDA3937_RS04415at 974.875 kb on - strand, within DDA3937_RS04415at 974.879 kb on + strand, within DDA3937_RS04415at 974.908 kb on + strand, within DDA3937_RS04415at 974.909 kb on - strand, within DDA3937_RS04415at 974.917 kb on - strand, within DDA3937_RS04415at 974.917 kb on - strand, within DDA3937_RS04415at 974.924 kb on + strand, within DDA3937_RS04415at 974.926 kb on + strand, within DDA3937_RS04415at 974.926 kb on + strand, within DDA3937_RS04415at 974.927 kb on - strand, within DDA3937_RS04415at 974.927 kb on - strand, within DDA3937_RS04415at 974.953 kb on + strand, within DDA3937_RS04415at 974.953 kb on + strand, within DDA3937_RS04415at 974.953 kb on + strand, within DDA3937_RS04415at 974.953 kb on + strand, within DDA3937_RS04415at 974.953 kb on + strand, within DDA3937_RS04415at 974.982 kb on + strand, within DDA3937_RS04415at 974.983 kb on - strand, within DDA3937_RS04415at 974.995 kb on + strand, within DDA3937_RS04415at 974.996 kb on - strand, within DDA3937_RS04415at 975.037 kb on + strand, within DDA3937_RS04415at 975.038 kb on - strand, within DDA3937_RS04415at 975.111 kb on + strand, within DDA3937_RS04415at 975.111 kb on + strand, within DDA3937_RS04415at 975.111 kb on + strand, within DDA3937_RS04415at 975.111 kb on + strand, within DDA3937_RS04415at 975.111 kb on + strand, within DDA3937_RS04415at 975.112 kb on - strand, within DDA3937_RS04415at 975.112 kb on - strand, within DDA3937_RS04415at 975.112 kb on - strand, within DDA3937_RS04415at 975.275 kb on + strand, within DDA3937_RS04415at 975.313 kb on + strand, within DDA3937_RS04415at 975.313 kb on + strand, within DDA3937_RS04415at 975.313 kb on + strand, within DDA3937_RS04415at 975.313 kb on + strand, within DDA3937_RS04415at 975.314 kb on - strand, within DDA3937_RS04415at 975.335 kb on + strand, within DDA3937_RS04415at 975.335 kb on + strand, within DDA3937_RS04415at 975.336 kb on - strand, within DDA3937_RS04415at 975.336 kb on - strand, within DDA3937_RS04415at 975.470 kb on + strand, within DDA3937_RS04415at 975.470 kb on + strand, within DDA3937_RS04415at 975.470 kb on + strand, within DDA3937_RS04415at 975.471 kb on - strand, within DDA3937_RS04415at 975.473 kb on + strand, within DDA3937_RS04415at 975.473 kb on + strand, within DDA3937_RS04415at 975.473 kb on + strand, within DDA3937_RS04415at 975.473 kb on + strand, within DDA3937_RS04415at 975.473 kb on + strand, within DDA3937_RS04415at 975.473 kb on + strand, within DDA3937_RS04415at 975.473 kb on + strand, within DDA3937_RS04415at 975.473 kb on + strand, within DDA3937_RS04415at 975.474 kb on - strand, within DDA3937_RS04415at 975.474 kb on - strand, within DDA3937_RS04415at 975.474 kb on - strand, within DDA3937_RS04415at 975.474 kb on - strand, within DDA3937_RS04415at 975.474 kb on - strand, within DDA3937_RS04415at 975.474 kb on - strand, within DDA3937_RS04415at 975.474 kb on - strand, within DDA3937_RS04415at 975.475 kb on + strand, within DDA3937_RS04415at 975.475 kb on + strand, within DDA3937_RS04415at 975.475 kb on + strand, within DDA3937_RS04415at 975.475 kb on + strand, within DDA3937_RS04415at 975.476 kb on - strand, within DDA3937_RS04415at 975.476 kb on - strand, within DDA3937_RS04415at 975.476 kb on - strand, within DDA3937_RS04415at 975.476 kb on - strand, within DDA3937_RS04415at 975.659 kb on + strandat 975.711 kb on - strandat 975.854 kb on - strandat 975.859 kb on + strandat 975.860 kb on - strandat 975.860 kb on - strandat 975.861 kb on + strandat 975.861 kb on + strandat 975.861 kb on + strandat 975.861 kb on + strandat 975.861 kb on + strandat 975.861 kb on + strandat 975.861 kb on + strandat 975.861 kb on + strandat 975.861 kb on + strandat 975.861 kb on + strandat 975.862 kb on - strandat 975.862 kb on - strandat 975.862 kb on - strandat 975.862 kb on - strandat 975.862 kb on - strandat 975.862 kb on - strandat 975.862 kb on - strandat 975.862 kb on - strandat 975.875 kb on + strandat 975.875 kb on + strandat 975.876 kb on - strandat 975.921 kb on - strandat 975.959 kb on + strandat 976.001 kb on + strandat 976.002 kb on - strandat 976.002 kb on - strandat 976.006 kb on + strandat 976.007 kb on - strandat 976.040 kb on + strand, within DDA3937_RS04420at 976.040 kb on + strand, within DDA3937_RS04420at 976.040 kb on + strand, within DDA3937_RS04420at 976.040 kb on + strand, within DDA3937_RS04420at 976.040 kb on + strand, within DDA3937_RS04420at 976.041 kb on - strand, within DDA3937_RS04420at 976.041 kb on - strand, within DDA3937_RS04420at 976.446 kb on + strand, within DDA3937_RS04420at 976.446 kb on + strand, within DDA3937_RS04420at 976.446 kb on + strand, within DDA3937_RS04420at 976.446 kb on + strand, within DDA3937_RS04420at 976.446 kb on + strand, within DDA3937_RS04420at 976.446 kb on + strand, within DDA3937_RS04420at 976.446 kb on + strand, within DDA3937_RS04420at 976.678 kb on - strand, within DDA3937_RS04420at 976.690 kb on - strand, within DDA3937_RS04420at 976.690 kb on - strand, within DDA3937_RS04420at 976.705 kb on - strand, within DDA3937_RS04420

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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973,453 - DDA3937_RS04405 0.46 +0.3
973,463 + DDA3937_RS04405 0.48 +2.9
973,464 - DDA3937_RS04405 0.49 +0.1
973,478 + DDA3937_RS04405 0.52 +2.0
973,479 - DDA3937_RS04405 0.52 -0.5
973,479 - DDA3937_RS04405 0.52 -1.5
973,544 + DDA3937_RS04405 0.68 +2.3
973,551 + DDA3937_RS04405 0.70 +2.4
973,551 + DDA3937_RS04405 0.70 +2.3
973,551 + DDA3937_RS04405 0.70 +2.8
973,552 - DDA3937_RS04405 0.70 +0.5
973,552 - DDA3937_RS04405 0.70 +0.2
973,552 - DDA3937_RS04405 0.70 -0.8
973,552 - DDA3937_RS04405 0.70 -2.4
973,552 - DDA3937_RS04405 0.70 -0.9
973,552 - DDA3937_RS04405 0.70 -0.6
973,566 - DDA3937_RS04405 0.73 +0.1
973,603 - DDA3937_RS04405 0.82 -0.3
973,612 - DDA3937_RS04405 0.84 -0.6
973,637 + +0.8
973,637 + -0.0
973,637 + +0.5
973,637 + +1.7
973,637 + +2.1
973,637 + -1.2
973,638 - -1.5
973,638 - +0.7
973,638 - -0.6
973,638 - -0.9
973,638 - -0.5
973,706 - -0.0
973,742 + +0.2
973,743 - -0.0
973,743 - -1.2
973,745 - -0.0
973,816 + DDA3937_RS04410 0.15 +0.4
973,820 + DDA3937_RS04410 0.16 +0.4
973,821 - DDA3937_RS04410 0.16 -1.0
973,844 + DDA3937_RS04410 0.19 +0.3
973,847 - DDA3937_RS04410 0.20 -0.2
973,997 + DDA3937_RS04410 0.41 +1.0
974,013 + DDA3937_RS04410 0.44 +1.4
974,112 + DDA3937_RS04410 0.58 -0.9
974,117 + DDA3937_RS04410 0.59 -2.6
974,158 + DDA3937_RS04410 0.65 -0.7
974,158 + DDA3937_RS04410 0.65 +0.3
974,159 - DDA3937_RS04410 0.65 -1.2
974,169 + DDA3937_RS04410 0.66 -0.4
974,289 - DDA3937_RS04410 0.84 +0.9
974,330 + DDA3937_RS04410 0.90 -1.8
974,360 - -0.0
974,391 + +0.4
974,395 + -0.6
974,395 + +0.0
974,395 + -0.2
974,396 - -0.9
974,396 - +2.3
974,400 - -0.6
974,527 + -1.6
974,527 + -0.3
974,751 + DDA3937_RS04415 0.26 -1.4
974,751 + DDA3937_RS04415 0.26 -0.4
974,803 - DDA3937_RS04415 0.30 +0.1
974,838 + DDA3937_RS04415 0.32 +1.3
974,839 - DDA3937_RS04415 0.33 +0.1
974,839 - DDA3937_RS04415 0.33 +2.0
974,839 - DDA3937_RS04415 0.33 +0.1
974,839 - DDA3937_RS04415 0.33 +0.3
974,847 + DDA3937_RS04415 0.33 +0.8
974,855 - DDA3937_RS04415 0.34 -1.0
974,875 - DDA3937_RS04415 0.35 -0.6
974,879 + DDA3937_RS04415 0.36 +0.5
974,908 + DDA3937_RS04415 0.38 -2.0
974,909 - DDA3937_RS04415 0.38 -0.8
974,917 - DDA3937_RS04415 0.39 +0.4
974,917 - DDA3937_RS04415 0.39 -2.2
974,924 + DDA3937_RS04415 0.39 +0.1
974,926 + DDA3937_RS04415 0.39 +0.6
974,926 + DDA3937_RS04415 0.39 -0.9
974,927 - DDA3937_RS04415 0.39 +0.6
974,927 - DDA3937_RS04415 0.39 +1.4
974,953 + DDA3937_RS04415 0.41 -2.4
974,953 + DDA3937_RS04415 0.41 +1.4
974,953 + DDA3937_RS04415 0.41 +0.0
974,953 + DDA3937_RS04415 0.41 +1.2
974,953 + DDA3937_RS04415 0.41 -0.2
974,982 + DDA3937_RS04415 0.44 +1.0
974,983 - DDA3937_RS04415 0.44 -0.9
974,995 + DDA3937_RS04415 0.45 -0.7
974,996 - DDA3937_RS04415 0.45 +0.8
975,037 + DDA3937_RS04415 0.48 -0.4
975,038 - DDA3937_RS04415 0.48 -1.2
975,111 + DDA3937_RS04415 0.54 +0.9
975,111 + DDA3937_RS04415 0.54 -0.1
975,111 + DDA3937_RS04415 0.54 -0.1
975,111 + DDA3937_RS04415 0.54 +0.1
975,111 + DDA3937_RS04415 0.54 -0.0
975,112 - DDA3937_RS04415 0.54 -0.5
975,112 - DDA3937_RS04415 0.54 +0.4
975,112 - DDA3937_RS04415 0.54 -1.6
975,275 + DDA3937_RS04415 0.66 +0.4
975,313 + DDA3937_RS04415 0.69 +1.0
975,313 + DDA3937_RS04415 0.69 -0.6
975,313 + DDA3937_RS04415 0.69 -0.6
975,313 + DDA3937_RS04415 0.69 -1.8
975,314 - DDA3937_RS04415 0.69 -0.6
975,335 + DDA3937_RS04415 0.71 +0.9
975,335 + DDA3937_RS04415 0.71 +0.9
975,336 - DDA3937_RS04415 0.71 -2.6
975,336 - DDA3937_RS04415 0.71 -0.8
975,470 + DDA3937_RS04415 0.81 -1.0
975,470 + DDA3937_RS04415 0.81 +0.7
975,470 + DDA3937_RS04415 0.81 +0.9
975,471 - DDA3937_RS04415 0.81 -0.2
975,473 + DDA3937_RS04415 0.81 -0.9
975,473 + DDA3937_RS04415 0.81 +0.1
975,473 + DDA3937_RS04415 0.81 -1.9
975,473 + DDA3937_RS04415 0.81 -1.1
975,473 + DDA3937_RS04415 0.81 -0.7
975,473 + DDA3937_RS04415 0.81 +0.0
975,473 + DDA3937_RS04415 0.81 -0.3
975,473 + DDA3937_RS04415 0.81 -1.0
975,474 - DDA3937_RS04415 0.82 -1.6
975,474 - DDA3937_RS04415 0.82 +0.3
975,474 - DDA3937_RS04415 0.82 +0.6
975,474 - DDA3937_RS04415 0.82 +1.3
975,474 - DDA3937_RS04415 0.82 +0.4
975,474 - DDA3937_RS04415 0.82 -0.0
975,474 - DDA3937_RS04415 0.82 -0.9
975,475 + DDA3937_RS04415 0.82 -0.6
975,475 + DDA3937_RS04415 0.82 -0.3
975,475 + DDA3937_RS04415 0.82 -0.4
975,475 + DDA3937_RS04415 0.82 -0.3
975,476 - DDA3937_RS04415 0.82 -0.3
975,476 - DDA3937_RS04415 0.82 +0.1
975,476 - DDA3937_RS04415 0.82 -1.0
975,476 - DDA3937_RS04415 0.82 +0.8
975,659 + -0.1
975,711 - -1.2
975,854 - -0.0
975,859 + -0.8
975,860 - +0.5
975,860 - -1.7
975,861 + -1.4
975,861 + -1.8
975,861 + -0.8
975,861 + +0.2
975,861 + +1.0
975,861 + +1.9
975,861 + -0.6
975,861 + -0.1
975,861 + -0.6
975,861 + -1.2
975,862 - +0.2
975,862 - +1.4
975,862 - -0.8
975,862 - -1.2
975,862 - -0.0
975,862 - +0.9
975,862 - +2.0
975,862 - -0.0
975,875 + -0.9
975,875 + -0.4
975,876 - +1.9
975,921 - -1.5
975,959 + -0.6
976,001 + +0.7
976,002 - +0.7
976,002 - -0.3
976,006 + -1.2
976,007 - -1.8
976,040 + DDA3937_RS04420 0.11 -0.8
976,040 + DDA3937_RS04420 0.11 -0.6
976,040 + DDA3937_RS04420 0.11 -3.0
976,040 + DDA3937_RS04420 0.11 +0.0
976,040 + DDA3937_RS04420 0.11 -0.6
976,041 - DDA3937_RS04420 0.11 -1.2
976,041 - DDA3937_RS04420 0.11 -1.7
976,446 + DDA3937_RS04420 0.56 -0.3
976,446 + DDA3937_RS04420 0.56 +2.4
976,446 + DDA3937_RS04420 0.56 -0.5
976,446 + DDA3937_RS04420 0.56 +0.5
976,446 + DDA3937_RS04420 0.56 -1.6
976,446 + DDA3937_RS04420 0.56 -1.3
976,446 + DDA3937_RS04420 0.56 -1.6
976,678 - DDA3937_RS04420 0.82 +0.8
976,690 - DDA3937_RS04420 0.83 -2.2
976,690 - DDA3937_RS04420 0.83 -0.2
976,705 - DDA3937_RS04420 0.85 +0.4

Or see this region's nucleotide sequence