Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03505 and DDA3937_RS03510 overlap by 4 nucleotides DDA3937_RS03510 and DDA3937_RS03515 are separated by 1 nucleotides DDA3937_RS03515 and DDA3937_RS03520 are separated by 42 nucleotides DDA3937_RS03520 and DDA3937_RS03525 are separated by 148 nucleotides
DDA3937_RS03505: DDA3937_RS03505 - ABC transporter permease, at 771,642 to 772,700
_RS03505
DDA3937_RS03510: DDA3937_RS03510 - ABC transporter permease, at 772,697 to 773,602
_RS03510
DDA3937_RS03515: DDA3937_RS03515 - ATP-binding cassette domain-containing protein, at 773,604 to 774,467
_RS03515
DDA3937_RS03520: DDA3937_RS03520 - ABC transporter ATP-binding protein, at 774,510 to 775,283
_RS03520
DDA3937_RS03525: DDA3937_RS03525 - sigma-70 family RNA polymerase sigma factor, at 775,432 to 775,968
_RS03525
Position (kb) 773
774
775 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 772.668 kb on + strand at 772.668 kb on + strand at 772.668 kb on + strand at 772.696 kb on + strand at 772.696 kb on + strand at 772.696 kb on + strand at 772.697 kb on - strand at 772.821 kb on + strand, within DDA3937_RS03510 at 772.912 kb on + strand, within DDA3937_RS03510 at 772.912 kb on + strand, within DDA3937_RS03510 at 772.912 kb on + strand, within DDA3937_RS03510 at 772.912 kb on + strand, within DDA3937_RS03510 at 772.975 kb on + strand, within DDA3937_RS03510 at 772.975 kb on + strand, within DDA3937_RS03510 at 772.976 kb on - strand, within DDA3937_RS03510 at 772.976 kb on - strand, within DDA3937_RS03510 at 772.988 kb on + strand, within DDA3937_RS03510 at 772.989 kb on - strand, within DDA3937_RS03510 at 772.989 kb on - strand, within DDA3937_RS03510 at 772.989 kb on - strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.010 kb on - strand, within DDA3937_RS03510 at 773.010 kb on - strand, within DDA3937_RS03510 at 773.010 kb on - strand, within DDA3937_RS03510 at 773.010 kb on - strand, within DDA3937_RS03510 at 773.010 kb on - strand, within DDA3937_RS03510 at 773.010 kb on - strand, within DDA3937_RS03510 at 773.010 kb on - strand, within DDA3937_RS03510 at 773.010 kb on - strand, within DDA3937_RS03510 at 773.010 kb on - strand, within DDA3937_RS03510 at 773.011 kb on + strand, within DDA3937_RS03510 at 773.078 kb on + strand, within DDA3937_RS03510 at 773.110 kb on + strand, within DDA3937_RS03510 at 773.111 kb on - strand, within DDA3937_RS03510 at 773.111 kb on - strand, within DDA3937_RS03510 at 773.206 kb on + strand, within DDA3937_RS03510 at 773.206 kb on + strand, within DDA3937_RS03510 at 773.206 kb on + strand, within DDA3937_RS03510 at 773.206 kb on + strand, within DDA3937_RS03510 at 773.207 kb on - strand, within DDA3937_RS03510 at 773.571 kb on + strand at 773.571 kb on + strand at 773.571 kb on + strand at 773.572 kb on - strand at 773.572 kb on - strand at 773.600 kb on + strand at 773.622 kb on - strand at 773.876 kb on + strand, within DDA3937_RS03515 at 773.912 kb on + strand, within DDA3937_RS03515 at 773.912 kb on + strand, within DDA3937_RS03515 at 773.912 kb on + strand, within DDA3937_RS03515 at 773.928 kb on + strand, within DDA3937_RS03515 at 773.928 kb on + strand, within DDA3937_RS03515 at 773.928 kb on + strand, within DDA3937_RS03515 at 773.977 kb on - strand, within DDA3937_RS03515 at 774.069 kb on + strand, within DDA3937_RS03515 at 774.069 kb on + strand, within DDA3937_RS03515 at 774.070 kb on - strand, within DDA3937_RS03515 at 774.116 kb on + strand, within DDA3937_RS03515 at 774.116 kb on + strand, within DDA3937_RS03515 at 774.117 kb on - strand, within DDA3937_RS03515 at 774.117 kb on - strand, within DDA3937_RS03515 at 774.138 kb on - strand, within DDA3937_RS03515 at 774.138 kb on - strand, within DDA3937_RS03515 at 774.257 kb on + strand, within DDA3937_RS03515 at 774.312 kb on + strand, within DDA3937_RS03515 at 774.312 kb on + strand, within DDA3937_RS03515 at 774.312 kb on + strand, within DDA3937_RS03515 at 774.313 kb on - strand, within DDA3937_RS03515 at 774.313 kb on - strand, within DDA3937_RS03515 at 774.313 kb on - strand, within DDA3937_RS03515 at 774.372 kb on + strand at 774.372 kb on + strand, within DDA3937_RS03515 at 774.372 kb on + strand, within DDA3937_RS03515 at 774.372 kb on + strand, within DDA3937_RS03515 at 774.372 kb on + strand, within DDA3937_RS03515 at 774.372 kb on + strand, within DDA3937_RS03515 at 774.373 kb on - strand, within DDA3937_RS03515 at 774.373 kb on - strand, within DDA3937_RS03515 at 774.477 kb on - strand at 774.477 kb on - strand at 774.477 kb on - strand at 774.573 kb on + strand at 774.573 kb on + strand at 774.573 kb on + strand at 774.573 kb on + strand at 774.573 kb on + strand at 774.574 kb on - strand at 774.574 kb on - strand at 774.574 kb on - strand at 774.574 kb on - strand at 774.574 kb on - strand at 774.574 kb on - strand at 774.580 kb on + strand at 774.581 kb on - strand at 774.581 kb on - strand at 774.694 kb on + strand, within DDA3937_RS03520 at 774.695 kb on - strand, within DDA3937_RS03520 at 774.695 kb on - strand, within DDA3937_RS03520 at 774.695 kb on - strand, within DDA3937_RS03520 at 774.760 kb on + strand, within DDA3937_RS03520 at 774.761 kb on - strand, within DDA3937_RS03520 at 774.830 kb on - strand, within DDA3937_RS03520 at 774.866 kb on + strand, within DDA3937_RS03520 at 774.871 kb on + strand, within DDA3937_RS03520 at 775.083 kb on + strand, within DDA3937_RS03520 at 775.083 kb on + strand, within DDA3937_RS03520 at 775.084 kb on - strand, within DDA3937_RS03520 at 775.084 kb on - strand, within DDA3937_RS03520 at 775.084 kb on - strand, within DDA3937_RS03520 at 775.149 kb on + strand, within DDA3937_RS03520 at 775.150 kb on - strand, within DDA3937_RS03520 at 775.158 kb on - strand, within DDA3937_RS03520 at 775.196 kb on + strand, within DDA3937_RS03520 at 775.197 kb on - strand at 775.214 kb on + strand at 775.215 kb on - strand at 775.215 kb on - strand at 775.245 kb on + strand at 775.245 kb on + strand at 775.246 kb on - strand at 775.246 kb on - strand at 775.282 kb on - strand at 775.310 kb on + strand at 775.310 kb on + strand at 775.310 kb on + strand at 775.310 kb on + strand at 775.311 kb on - strand at 775.311 kb on - strand at 775.311 kb on - strand at 775.313 kb on + strand at 775.314 kb on - strand at 775.348 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 772,668 + +0.9 772,668 + +0.1 772,668 + -1.4 772,696 + -0.8 772,696 + +0.6 772,696 + -0.1 772,697 - +0.3 772,821 + DDA3937_RS03510 0.14 +1.1 772,912 + DDA3937_RS03510 0.24 +0.0 772,912 + DDA3937_RS03510 0.24 +2.5 772,912 + DDA3937_RS03510 0.24 +1.5 772,912 + DDA3937_RS03510 0.24 -1.8 772,975 + DDA3937_RS03510 0.31 -0.5 772,975 + DDA3937_RS03510 0.31 -0.1 772,976 - DDA3937_RS03510 0.31 -0.2 772,976 - DDA3937_RS03510 0.31 -1.0 772,988 + DDA3937_RS03510 0.32 -0.1 772,989 - DDA3937_RS03510 0.32 -0.2 772,989 - DDA3937_RS03510 0.32 -0.3 772,989 - DDA3937_RS03510 0.32 +0.9 773,009 + DDA3937_RS03510 0.34 -0.3 773,009 + DDA3937_RS03510 0.34 -0.9 773,009 + DDA3937_RS03510 0.34 -0.2 773,009 + DDA3937_RS03510 0.34 -0.2 773,009 + DDA3937_RS03510 0.34 -0.2 773,009 + DDA3937_RS03510 0.34 +1.3 773,009 + DDA3937_RS03510 0.34 +0.3 773,009 + DDA3937_RS03510 0.34 -0.8 773,009 + DDA3937_RS03510 0.34 -0.3 773,009 + DDA3937_RS03510 0.34 +0.4 773,010 - DDA3937_RS03510 0.35 +4.6 773,010 - DDA3937_RS03510 0.35 -0.7 773,010 - DDA3937_RS03510 0.35 +0.7 773,010 - DDA3937_RS03510 0.35 -0.1 773,010 - DDA3937_RS03510 0.35 -0.9 773,010 - DDA3937_RS03510 0.35 -3.0 773,010 - DDA3937_RS03510 0.35 +0.7 773,010 - DDA3937_RS03510 0.35 -0.7 773,010 - DDA3937_RS03510 0.35 +0.8 773,011 + DDA3937_RS03510 0.35 -0.8 773,078 + DDA3937_RS03510 0.42 -0.7 773,110 + DDA3937_RS03510 0.46 -0.9 773,111 - DDA3937_RS03510 0.46 -1.3 773,111 - DDA3937_RS03510 0.46 -1.8 773,206 + DDA3937_RS03510 0.56 -2.2 773,206 + DDA3937_RS03510 0.56 -0.1 773,206 + DDA3937_RS03510 0.56 +0.2 773,206 + DDA3937_RS03510 0.56 +0.7 773,207 - DDA3937_RS03510 0.56 +1.7 773,571 + -0.8 773,571 + -1.7 773,571 + +0.0 773,572 - -0.9 773,572 - -0.8 773,600 + -0.6 773,622 - -0.2 773,876 + DDA3937_RS03515 0.31 -1.4 773,912 + DDA3937_RS03515 0.36 +0.1 773,912 + DDA3937_RS03515 0.36 +0.0 773,912 + DDA3937_RS03515 0.36 +1.2 773,928 + DDA3937_RS03515 0.38 +1.2 773,928 + DDA3937_RS03515 0.38 -1.3 773,928 + DDA3937_RS03515 0.38 +0.1 773,977 - DDA3937_RS03515 0.43 +0.2 774,069 + DDA3937_RS03515 0.54 -0.6 774,069 + DDA3937_RS03515 0.54 -0.3 774,070 - DDA3937_RS03515 0.54 +0.3 774,116 + DDA3937_RS03515 0.59 -0.5 774,116 + DDA3937_RS03515 0.59 -0.4 774,117 - DDA3937_RS03515 0.59 -0.3 774,117 - DDA3937_RS03515 0.59 -0.4 774,138 - DDA3937_RS03515 0.62 -0.5 774,138 - DDA3937_RS03515 0.62 +0.5 774,257 + DDA3937_RS03515 0.76 +0.4 774,312 + DDA3937_RS03515 0.82 +1.0 774,312 + DDA3937_RS03515 0.82 -0.3 774,312 + DDA3937_RS03515 0.82 -1.7 774,313 - DDA3937_RS03515 0.82 -0.5 774,313 - DDA3937_RS03515 0.82 +0.8 774,313 - DDA3937_RS03515 0.82 +0.2 774,372 + +0.5 774,372 + DDA3937_RS03515 0.89 +1.0 774,372 + DDA3937_RS03515 0.89 +1.6 774,372 + DDA3937_RS03515 0.89 +0.4 774,372 + DDA3937_RS03515 0.89 -1.0 774,372 + DDA3937_RS03515 0.89 -0.3 774,373 - DDA3937_RS03515 0.89 -0.3 774,373 - DDA3937_RS03515 0.89 -0.8 774,477 - -1.1 774,477 - +1.9 774,477 - +0.9 774,573 + -1.1 774,573 + -0.3 774,573 + -2.0 774,573 + -0.5 774,573 + +1.1 774,574 - +0.1 774,574 - +1.2 774,574 - +0.4 774,574 - -0.8 774,574 - +2.4 774,574 - -2.9 774,580 + -0.3 774,581 - -0.4 774,581 - -0.9 774,694 + DDA3937_RS03520 0.24 -0.5 774,695 - DDA3937_RS03520 0.24 +2.9 774,695 - DDA3937_RS03520 0.24 -1.1 774,695 - DDA3937_RS03520 0.24 -0.9 774,760 + DDA3937_RS03520 0.32 -1.8 774,761 - DDA3937_RS03520 0.32 -0.3 774,830 - DDA3937_RS03520 0.41 -0.5 774,866 + DDA3937_RS03520 0.46 -0.9 774,871 + DDA3937_RS03520 0.47 +0.1 775,083 + DDA3937_RS03520 0.74 +0.5 775,083 + DDA3937_RS03520 0.74 +0.9 775,084 - DDA3937_RS03520 0.74 -0.7 775,084 - DDA3937_RS03520 0.74 +0.7 775,084 - DDA3937_RS03520 0.74 -1.8 775,149 + DDA3937_RS03520 0.83 -1.6 775,150 - DDA3937_RS03520 0.83 -2.0 775,158 - DDA3937_RS03520 0.84 -0.6 775,196 + DDA3937_RS03520 0.89 -0.3 775,197 - +1.5 775,214 + +0.5 775,215 - -0.7 775,215 - +1.5 775,245 + +0.6 775,245 + +0.3 775,246 - -0.3 775,246 - -0.4 775,282 - -0.7 775,310 + +0.1 775,310 + -0.1 775,310 + +0.4 775,310 + -0.7 775,311 - -0.7 775,311 - +0.2 775,311 - -0.4 775,313 + +0.0 775,314 - -1.7 775,348 - -1.6
Or see this region's nucleotide sequence