Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00685 and DDA3937_RS00690 are separated by 130 nucleotides DDA3937_RS00690 and DDA3937_RS00695 are separated by 758 nucleotides
DDA3937_RS00685: DDA3937_RS00685 - PLP-dependent aminotransferase family protein, at 157,016 to 158,200
_RS00685
DDA3937_RS00690: DDA3937_RS00690 - MCP four helix bundle domain-containing protein, at 158,331 to 159,968
_RS00690
DDA3937_RS00695: DDA3937_RS00695 - hypothetical protein, at 160,727 to 161,644
_RS00695
Position (kb) 158
159
160 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 157.369 kb on + strand, within DDA3937_RS00685 at 157.380 kb on + strand, within DDA3937_RS00685 at 157.394 kb on + strand, within DDA3937_RS00685 at 157.394 kb on + strand, within DDA3937_RS00685 at 157.395 kb on - strand, within DDA3937_RS00685 at 157.395 kb on - strand, within DDA3937_RS00685 at 157.395 kb on - strand, within DDA3937_RS00685 at 157.407 kb on + strand, within DDA3937_RS00685 at 157.437 kb on + strand, within DDA3937_RS00685 at 157.437 kb on + strand, within DDA3937_RS00685 at 157.438 kb on - strand, within DDA3937_RS00685 at 157.438 kb on - strand, within DDA3937_RS00685 at 157.521 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.720 kb on + strand, within DDA3937_RS00685 at 157.720 kb on + strand, within DDA3937_RS00685 at 157.720 kb on + strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.796 kb on - strand, within DDA3937_RS00685 at 157.796 kb on - strand, within DDA3937_RS00685 at 157.852 kb on + strand, within DDA3937_RS00685 at 157.862 kb on + strand, within DDA3937_RS00685 at 157.862 kb on + strand, within DDA3937_RS00685 at 157.863 kb on - strand, within DDA3937_RS00685 at 157.863 kb on - strand, within DDA3937_RS00685 at 157.863 kb on - strand, within DDA3937_RS00685 at 157.865 kb on + strand, within DDA3937_RS00685 at 157.866 kb on - strand, within DDA3937_RS00685 at 157.866 kb on - strand, within DDA3937_RS00685 at 157.866 kb on - strand, within DDA3937_RS00685 at 158.036 kb on - strand, within DDA3937_RS00685 at 158.251 kb on + strand at 158.251 kb on + strand at 158.367 kb on + strand at 158.549 kb on + strand, within DDA3937_RS00690 at 158.549 kb on + strand, within DDA3937_RS00690 at 158.592 kb on + strand, within DDA3937_RS00690 at 158.593 kb on - strand, within DDA3937_RS00690 at 158.593 kb on - strand, within DDA3937_RS00690 at 158.593 kb on - strand, within DDA3937_RS00690 at 158.719 kb on - strand, within DDA3937_RS00690 at 158.877 kb on - strand, within DDA3937_RS00690 at 159.015 kb on - strand, within DDA3937_RS00690 at 159.218 kb on + strand, within DDA3937_RS00690 at 159.338 kb on + strand, within DDA3937_RS00690 at 159.361 kb on - strand, within DDA3937_RS00690 at 159.467 kb on + strand, within DDA3937_RS00690 at 159.470 kb on + strand, within DDA3937_RS00690 at 159.470 kb on + strand, within DDA3937_RS00690 at 159.470 kb on + strand, within DDA3937_RS00690 at 159.471 kb on - strand, within DDA3937_RS00690 at 159.471 kb on - strand, within DDA3937_RS00690 at 159.494 kb on + strand, within DDA3937_RS00690 at 159.495 kb on - strand, within DDA3937_RS00690 at 159.625 kb on - strand, within DDA3937_RS00690 at 159.628 kb on - strand, within DDA3937_RS00690 at 159.628 kb on - strand, within DDA3937_RS00690 at 159.654 kb on - strand, within DDA3937_RS00690 at 159.654 kb on - strand, within DDA3937_RS00690 at 159.665 kb on + strand, within DDA3937_RS00690 at 159.665 kb on + strand, within DDA3937_RS00690 at 159.665 kb on + strand, within DDA3937_RS00690 at 159.666 kb on - strand, within DDA3937_RS00690 at 159.687 kb on - strand, within DDA3937_RS00690 at 159.711 kb on - strand, within DDA3937_RS00690 at 159.752 kb on + strand, within DDA3937_RS00690 at 159.752 kb on + strand, within DDA3937_RS00690 at 159.752 kb on + strand, within DDA3937_RS00690 at 159.753 kb on - strand, within DDA3937_RS00690 at 159.753 kb on - strand, within DDA3937_RS00690 at 159.753 kb on - strand, within DDA3937_RS00690 at 159.753 kb on - strand, within DDA3937_RS00690 at 159.753 kb on - strand, within DDA3937_RS00690 at 159.761 kb on + strand, within DDA3937_RS00690 at 159.776 kb on + strand, within DDA3937_RS00690 at 159.779 kb on + strand, within DDA3937_RS00690 at 159.779 kb on + strand, within DDA3937_RS00690 at 159.779 kb on + strand, within DDA3937_RS00690 at 159.780 kb on - strand, within DDA3937_RS00690 at 159.782 kb on + strand, within DDA3937_RS00690 at 159.783 kb on - strand, within DDA3937_RS00690 at 159.783 kb on - strand, within DDA3937_RS00690 at 159.783 kb on - strand, within DDA3937_RS00690 at 159.793 kb on + strand, within DDA3937_RS00690 at 159.793 kb on + strand, within DDA3937_RS00690 at 159.793 kb on + strand, within DDA3937_RS00690 at 159.794 kb on - strand, within DDA3937_RS00690 at 159.797 kb on + strand, within DDA3937_RS00690 at 159.797 kb on + strand, within DDA3937_RS00690 at 159.803 kb on + strand, within DDA3937_RS00690 at 159.804 kb on - strand, within DDA3937_RS00690 at 159.808 kb on - strand at 159.808 kb on - strand at 159.808 kb on - strand at 159.923 kb on + strand at 159.923 kb on + strand at 159.923 kb on + strand at 159.927 kb on - strand at 159.960 kb on + strand at 159.969 kb on - strand at 159.989 kb on - strand at 160.075 kb on + strand at 160.075 kb on + strand at 160.076 kb on - strand at 160.076 kb on - strand at 160.080 kb on - strand at 160.163 kb on - strand at 160.217 kb on + strand at 160.217 kb on + strand at 160.217 kb on + strand at 160.217 kb on + strand at 160.217 kb on + strand at 160.217 kb on + strand at 160.217 kb on + strand at 160.218 kb on - strand at 160.218 kb on - strand at 160.218 kb on - strand at 160.218 kb on - strand at 160.218 kb on - strand at 160.218 kb on - strand at 160.251 kb on + strand at 160.251 kb on + strand at 160.252 kb on - strand at 160.322 kb on + strand at 160.322 kb on + strand at 160.322 kb on + strand at 160.323 kb on - strand at 160.323 kb on - strand at 160.323 kb on - strand at 160.323 kb on - strand at 160.323 kb on - strand at 160.323 kb on - strand at 160.323 kb on - strand at 160.323 kb on - strand at 160.323 kb on - strand at 160.327 kb on + strand at 160.379 kb on + strand at 160.407 kb on + strand at 160.407 kb on + strand at 160.408 kb on - strand at 160.416 kb on + strand at 160.416 kb on + strand at 160.428 kb on + strand at 160.428 kb on + strand at 160.428 kb on + strand at 160.429 kb on - strand at 160.429 kb on - strand at 160.429 kb on - strand at 160.429 kb on - strand at 160.453 kb on + strand at 160.454 kb on - strand at 160.454 kb on - strand at 160.535 kb on + strand at 160.535 kb on + strand at 160.535 kb on + strand at 160.535 kb on + strand at 160.535 kb on + strand at 160.535 kb on + strand at 160.536 kb on - strand at 160.536 kb on - strand at 160.536 kb on - strand at 160.536 kb on - strand at 160.536 kb on - strand at 160.536 kb on - strand at 160.565 kb on + strand at 160.565 kb on + strand at 160.565 kb on + strand at 160.565 kb on + strand at 160.566 kb on - strand at 160.566 kb on - strand at 160.566 kb on - strand at 160.566 kb on - strand at 160.567 kb on + strand at 160.567 kb on + strand at 160.567 kb on + strand at 160.568 kb on - strand at 160.568 kb on - strand at 160.568 kb on - strand at 160.568 kb on - strand at 160.568 kb on - strand at 160.568 kb on - strand at 160.568 kb on - strand at 160.571 kb on + strand at 160.571 kb on + strand at 160.578 kb on + strand at 160.628 kb on + strand at 160.628 kb on + strand at 160.628 kb on + strand at 160.628 kb on + strand at 160.628 kb on + strand at 160.628 kb on + strand at 160.628 kb on + strand at 160.629 kb on - strand at 160.629 kb on - strand at 160.629 kb on - strand at 160.629 kb on - strand at 160.630 kb on + strand at 160.630 kb on + strand at 160.630 kb on + strand at 160.630 kb on + strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.665 kb on - strand at 160.765 kb on + strand at 160.765 kb on + strand at 160.894 kb on + strand, within DDA3937_RS00695 at 160.924 kb on + strand, within DDA3937_RS00695 at 160.924 kb on + strand, within DDA3937_RS00695 at 160.924 kb on + strand, within DDA3937_RS00695 at 160.924 kb on + strand, within DDA3937_RS00695 at 160.925 kb on - strand, within DDA3937_RS00695 at 160.946 kb on - strand, within DDA3937_RS00695
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 157,369 + DDA3937_RS00685 0.30 +2.6 157,380 + DDA3937_RS00685 0.31 -1.3 157,394 + DDA3937_RS00685 0.32 +1.6 157,394 + DDA3937_RS00685 0.32 +2.2 157,395 - DDA3937_RS00685 0.32 -1.1 157,395 - DDA3937_RS00685 0.32 -1.3 157,395 - DDA3937_RS00685 0.32 -0.2 157,407 + DDA3937_RS00685 0.33 +0.1 157,437 + DDA3937_RS00685 0.36 -1.6 157,437 + DDA3937_RS00685 0.36 +0.5 157,438 - DDA3937_RS00685 0.36 +0.3 157,438 - DDA3937_RS00685 0.36 -0.0 157,521 - DDA3937_RS00685 0.43 +0.4 157,719 - DDA3937_RS00685 0.59 +0.4 157,719 - DDA3937_RS00685 0.59 +5.2 157,719 - DDA3937_RS00685 0.59 -2.6 157,719 - DDA3937_RS00685 0.59 +0.2 157,719 - DDA3937_RS00685 0.59 +1.1 157,719 - DDA3937_RS00685 0.59 -1.9 157,719 - DDA3937_RS00685 0.59 -0.3 157,720 + DDA3937_RS00685 0.59 -0.4 157,720 + DDA3937_RS00685 0.59 +0.7 157,720 + DDA3937_RS00685 0.59 -0.8 157,721 - DDA3937_RS00685 0.59 -0.1 157,721 - DDA3937_RS00685 0.59 +0.1 157,721 - DDA3937_RS00685 0.59 -0.3 157,721 - DDA3937_RS00685 0.59 -1.5 157,721 - DDA3937_RS00685 0.59 -1.5 157,721 - DDA3937_RS00685 0.59 -0.6 157,721 - DDA3937_RS00685 0.59 +2.5 157,721 - DDA3937_RS00685 0.59 +0.2 157,721 - DDA3937_RS00685 0.59 -0.4 157,796 - DDA3937_RS00685 0.66 -0.2 157,796 - DDA3937_RS00685 0.66 +1.1 157,852 + DDA3937_RS00685 0.71 +2.3 157,862 + DDA3937_RS00685 0.71 -0.6 157,862 + DDA3937_RS00685 0.71 +0.7 157,863 - DDA3937_RS00685 0.71 +1.2 157,863 - DDA3937_RS00685 0.71 -0.5 157,863 - DDA3937_RS00685 0.71 -2.3 157,865 + DDA3937_RS00685 0.72 +0.4 157,866 - DDA3937_RS00685 0.72 +0.6 157,866 - DDA3937_RS00685 0.72 -0.6 157,866 - DDA3937_RS00685 0.72 -1.3 158,036 - DDA3937_RS00685 0.86 -0.3 158,251 + +0.2 158,251 + -0.1 158,367 + -0.8 158,549 + DDA3937_RS00690 0.13 -2.6 158,549 + DDA3937_RS00690 0.13 +0.4 158,592 + DDA3937_RS00690 0.16 +0.7 158,593 - DDA3937_RS00690 0.16 +1.1 158,593 - DDA3937_RS00690 0.16 +1.7 158,593 - DDA3937_RS00690 0.16 +0.1 158,719 - DDA3937_RS00690 0.24 +1.1 158,877 - DDA3937_RS00690 0.33 +0.4 159,015 - DDA3937_RS00690 0.42 +0.5 159,218 + DDA3937_RS00690 0.54 +0.5 159,338 + DDA3937_RS00690 0.61 +0.8 159,361 - DDA3937_RS00690 0.63 +0.8 159,467 + DDA3937_RS00690 0.69 -0.1 159,470 + DDA3937_RS00690 0.70 +0.4 159,470 + DDA3937_RS00690 0.70 -0.1 159,470 + DDA3937_RS00690 0.70 -0.4 159,471 - DDA3937_RS00690 0.70 -0.1 159,471 - DDA3937_RS00690 0.70 -0.5 159,494 + DDA3937_RS00690 0.71 -1.4 159,495 - DDA3937_RS00690 0.71 +1.2 159,625 - DDA3937_RS00690 0.79 -0.9 159,628 - DDA3937_RS00690 0.79 -1.7 159,628 - DDA3937_RS00690 0.79 -0.5 159,654 - DDA3937_RS00690 0.81 +1.1 159,654 - DDA3937_RS00690 0.81 +0.5 159,665 + DDA3937_RS00690 0.81 +1.0 159,665 + DDA3937_RS00690 0.81 +0.1 159,665 + DDA3937_RS00690 0.81 -0.9 159,666 - DDA3937_RS00690 0.82 -0.7 159,687 - DDA3937_RS00690 0.83 +0.3 159,711 - DDA3937_RS00690 0.84 -0.4 159,752 + DDA3937_RS00690 0.87 -0.1 159,752 + DDA3937_RS00690 0.87 +1.1 159,752 + DDA3937_RS00690 0.87 +1.5 159,753 - DDA3937_RS00690 0.87 -0.6 159,753 - DDA3937_RS00690 0.87 +0.6 159,753 - DDA3937_RS00690 0.87 -1.1 159,753 - DDA3937_RS00690 0.87 -1.8 159,753 - DDA3937_RS00690 0.87 -0.5 159,761 + DDA3937_RS00690 0.87 +1.6 159,776 + DDA3937_RS00690 0.88 +0.5 159,779 + DDA3937_RS00690 0.88 -0.7 159,779 + DDA3937_RS00690 0.88 +1.1 159,779 + DDA3937_RS00690 0.88 +0.5 159,780 - DDA3937_RS00690 0.88 -0.5 159,782 + DDA3937_RS00690 0.89 -0.3 159,783 - DDA3937_RS00690 0.89 -0.1 159,783 - DDA3937_RS00690 0.89 +0.2 159,783 - DDA3937_RS00690 0.89 -1.0 159,793 + DDA3937_RS00690 0.89 -0.4 159,793 + DDA3937_RS00690 0.89 +0.1 159,793 + DDA3937_RS00690 0.89 -0.8 159,794 - DDA3937_RS00690 0.89 -2.8 159,797 + DDA3937_RS00690 0.89 +0.4 159,797 + DDA3937_RS00690 0.89 -1.3 159,803 + DDA3937_RS00690 0.90 -1.1 159,804 - DDA3937_RS00690 0.90 -0.4 159,808 - +3.4 159,808 - -1.8 159,808 - -0.0 159,923 + +3.5 159,923 + -0.9 159,923 + +0.2 159,927 - -0.1 159,960 + -0.3 159,969 - -0.4 159,989 - +1.9 160,075 + -0.2 160,075 + +1.6 160,076 - -1.4 160,076 - -2.1 160,080 - +1.2 160,163 - -0.7 160,217 + +0.7 160,217 + +1.1 160,217 + -1.8 160,217 + -2.1 160,217 + +1.1 160,217 + +0.2 160,217 + +0.0 160,218 - +1.1 160,218 - -0.7 160,218 - -0.2 160,218 - -0.2 160,218 - +0.5 160,218 - +0.9 160,251 + -0.3 160,251 + -0.1 160,252 - -3.5 160,322 + +0.1 160,322 + -1.5 160,322 + +0.1 160,323 - -0.6 160,323 - +2.1 160,323 - -1.2 160,323 - -1.7 160,323 - -1.3 160,323 - +0.6 160,323 - -1.0 160,323 - +0.2 160,323 - -2.2 160,327 + -0.9 160,379 + -0.1 160,407 + +1.0 160,407 + +1.9 160,408 - +1.7 160,416 + +0.6 160,416 + -0.1 160,428 + -1.1 160,428 + -0.7 160,428 + +0.4 160,429 - -0.6 160,429 - -0.2 160,429 - -1.7 160,429 - +0.5 160,453 + -1.2 160,454 - +2.3 160,454 - +1.1 160,535 + -0.1 160,535 + -0.2 160,535 + -1.1 160,535 + +0.3 160,535 + -1.8 160,535 + +1.2 160,536 - +0.3 160,536 - -0.3 160,536 - -1.6 160,536 - -0.5 160,536 - -1.2 160,536 - -0.7 160,565 + +0.0 160,565 + +0.3 160,565 + -0.5 160,565 + +0.6 160,566 - +0.9 160,566 - -1.6 160,566 - -0.0 160,566 - -0.1 160,567 + -1.1 160,567 + +0.3 160,567 + +0.3 160,568 - -0.1 160,568 - -0.3 160,568 - +0.5 160,568 - -1.4 160,568 - -0.1 160,568 - -1.2 160,568 - +0.0 160,571 + +2.1 160,571 + -0.1 160,578 + +1.5 160,628 + +2.1 160,628 + +0.4 160,628 + -0.6 160,628 + -1.5 160,628 + +0.1 160,628 + -0.5 160,628 + +0.4 160,629 - -0.3 160,629 - -0.5 160,629 - -1.0 160,629 - -0.8 160,630 + -1.3 160,630 + -0.4 160,630 + -0.9 160,630 + +0.9 160,631 - +1.1 160,631 - +1.4 160,631 - +1.4 160,631 - -0.9 160,631 - -0.2 160,631 - -1.0 160,665 - +1.7 160,765 + -0.7 160,765 + +1.1 160,894 + DDA3937_RS00695 0.18 +0.9 160,924 + DDA3937_RS00695 0.21 -0.9 160,924 + DDA3937_RS00695 0.21 -0.9 160,924 + DDA3937_RS00695 0.21 -0.5 160,924 + DDA3937_RS00695 0.21 +3.7 160,925 - DDA3937_RS00695 0.22 -0.9 160,946 - DDA3937_RS00695 0.24 +0.7
Or see this region's nucleotide sequence