Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS20035 and DDA3937_RS20040 overlap by 1 nucleotides DDA3937_RS20040 and DDA3937_RS20045 are separated by 48 nucleotides DDA3937_RS20045 and DDA3937_RS20050 are separated by 47 nucleotides
DDA3937_RS20035: DDA3937_RS20035 - lipid III flippase WzxE, at 4,559,008 to 4,560,258
_RS20035
DDA3937_RS20040: DDA3937_RS20040 - dTDP-4-amino-4,6-dideoxygalactose transaminase, at 4,560,258 to 4,561,388
_RS20040
DDA3937_RS20045: DDA3937_RS20045 - dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase, at 4,561,437 to 4,562,153
_RS20045
DDA3937_RS20050: DDA3937_RS20050 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 4,562,201 to 4,563,466
_RS20050
Position (kb) 4560
4561
4562 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4559.328 kb on + strand, within DDA3937_RS20035 at 4559.328 kb on + strand, within DDA3937_RS20035 at 4559.329 kb on - strand, within DDA3937_RS20035 at 4559.329 kb on - strand, within DDA3937_RS20035 at 4559.332 kb on + strand, within DDA3937_RS20035 at 4559.332 kb on + strand, within DDA3937_RS20035 at 4559.333 kb on - strand, within DDA3937_RS20035 at 4559.333 kb on - strand, within DDA3937_RS20035 at 4559.333 kb on - strand, within DDA3937_RS20035 at 4559.333 kb on - strand, within DDA3937_RS20035 at 4559.404 kb on - strand, within DDA3937_RS20035 at 4559.435 kb on + strand, within DDA3937_RS20035 at 4559.436 kb on - strand, within DDA3937_RS20035 at 4559.436 kb on - strand, within DDA3937_RS20035 at 4559.522 kb on + strand, within DDA3937_RS20035 at 4559.522 kb on + strand, within DDA3937_RS20035 at 4559.523 kb on - strand, within DDA3937_RS20035 at 4559.555 kb on + strand, within DDA3937_RS20035 at 4559.555 kb on + strand, within DDA3937_RS20035 at 4559.598 kb on + strand, within DDA3937_RS20035 at 4559.599 kb on - strand, within DDA3937_RS20035 at 4559.684 kb on - strand, within DDA3937_RS20035 at 4559.742 kb on + strand, within DDA3937_RS20035 at 4559.744 kb on + strand, within DDA3937_RS20035 at 4559.744 kb on + strand, within DDA3937_RS20035 at 4559.744 kb on + strand, within DDA3937_RS20035 at 4559.744 kb on + strand, within DDA3937_RS20035 at 4559.745 kb on - strand, within DDA3937_RS20035 at 4559.745 kb on - strand, within DDA3937_RS20035 at 4559.745 kb on - strand, within DDA3937_RS20035 at 4559.745 kb on - strand, within DDA3937_RS20035 at 4559.772 kb on - strand, within DDA3937_RS20035 at 4559.772 kb on - strand, within DDA3937_RS20035 at 4560.061 kb on + strand, within DDA3937_RS20035 at 4560.131 kb on + strand, within DDA3937_RS20035 at 4560.131 kb on + strand, within DDA3937_RS20035 at 4560.131 kb on + strand, within DDA3937_RS20035 at 4560.132 kb on - strand, within DDA3937_RS20035 at 4560.132 kb on - strand, within DDA3937_RS20035 at 4560.293 kb on + strand at 4560.320 kb on - strand at 4560.320 kb on - strand at 4560.320 kb on - strand at 4560.320 kb on - strand at 4560.363 kb on - strand at 4560.425 kb on + strand, within DDA3937_RS20040 at 4560.425 kb on + strand, within DDA3937_RS20040 at 4560.425 kb on + strand, within DDA3937_RS20040 at 4560.425 kb on + strand, within DDA3937_RS20040 at 4560.426 kb on - strand, within DDA3937_RS20040 at 4560.426 kb on - strand, within DDA3937_RS20040 at 4560.426 kb on - strand at 4560.426 kb on - strand, within DDA3937_RS20040 at 4560.426 kb on - strand, within DDA3937_RS20040 at 4560.426 kb on - strand, within DDA3937_RS20040 at 4560.428 kb on - strand, within DDA3937_RS20040 at 4560.461 kb on + strand, within DDA3937_RS20040 at 4560.598 kb on + strand, within DDA3937_RS20040 at 4560.598 kb on + strand, within DDA3937_RS20040 at 4560.598 kb on + strand, within DDA3937_RS20040 at 4560.598 kb on + strand, within DDA3937_RS20040 at 4560.599 kb on - strand, within DDA3937_RS20040 at 4560.599 kb on - strand, within DDA3937_RS20040 at 4560.599 kb on - strand, within DDA3937_RS20040 at 4560.665 kb on - strand, within DDA3937_RS20040 at 4560.665 kb on - strand, within DDA3937_RS20040 at 4560.665 kb on - strand, within DDA3937_RS20040 at 4560.692 kb on - strand, within DDA3937_RS20040 at 4560.716 kb on + strand, within DDA3937_RS20040 at 4560.716 kb on + strand, within DDA3937_RS20040 at 4560.716 kb on + strand, within DDA3937_RS20040 at 4560.717 kb on - strand, within DDA3937_RS20040 at 4560.717 kb on - strand, within DDA3937_RS20040 at 4560.717 kb on - strand, within DDA3937_RS20040 at 4560.718 kb on + strand, within DDA3937_RS20040 at 4560.718 kb on + strand, within DDA3937_RS20040 at 4560.718 kb on + strand, within DDA3937_RS20040 at 4560.718 kb on + strand, within DDA3937_RS20040 at 4560.718 kb on + strand, within DDA3937_RS20040 at 4560.719 kb on - strand, within DDA3937_RS20040 at 4560.719 kb on - strand, within DDA3937_RS20040 at 4560.719 kb on - strand, within DDA3937_RS20040 at 4560.719 kb on - strand, within DDA3937_RS20040 at 4560.719 kb on - strand, within DDA3937_RS20040 at 4560.719 kb on - strand, within DDA3937_RS20040 at 4560.719 kb on - strand, within DDA3937_RS20040 at 4560.719 kb on - strand, within DDA3937_RS20040 at 4560.719 kb on - strand, within DDA3937_RS20040 at 4560.719 kb on - strand, within DDA3937_RS20040 at 4560.722 kb on + strand, within DDA3937_RS20040 at 4560.723 kb on - strand, within DDA3937_RS20040 at 4560.841 kb on + strand, within DDA3937_RS20040 at 4560.841 kb on + strand, within DDA3937_RS20040 at 4560.841 kb on + strand, within DDA3937_RS20040 at 4560.908 kb on - strand, within DDA3937_RS20040 at 4561.006 kb on + strand, within DDA3937_RS20040 at 4561.007 kb on - strand, within DDA3937_RS20040 at 4561.007 kb on - strand, within DDA3937_RS20040 at 4561.153 kb on + strand, within DDA3937_RS20040 at 4561.153 kb on + strand, within DDA3937_RS20040 at 4561.154 kb on - strand, within DDA3937_RS20040 at 4561.154 kb on - strand, within DDA3937_RS20040 at 4561.154 kb on - strand, within DDA3937_RS20040 at 4561.242 kb on + strand, within DDA3937_RS20040 at 4561.242 kb on + strand, within DDA3937_RS20040 at 4561.242 kb on + strand, within DDA3937_RS20040 at 4561.243 kb on - strand, within DDA3937_RS20040 at 4561.243 kb on - strand, within DDA3937_RS20040 at 4561.262 kb on - strand, within DDA3937_RS20040 at 4561.262 kb on - strand, within DDA3937_RS20040 at 4561.340 kb on + strand at 4561.340 kb on + strand at 4561.340 kb on + strand at 4561.340 kb on + strand at 4561.341 kb on - strand at 4561.341 kb on - strand at 4561.341 kb on - strand at 4561.341 kb on - strand at 4561.341 kb on - strand at 4561.341 kb on - strand at 4561.341 kb on - strand at 4561.341 kb on - strand at 4561.341 kb on - strand at 4561.342 kb on + strand at 4561.342 kb on + strand at 4561.342 kb on + strand at 4561.343 kb on - strand at 4561.343 kb on - strand at 4561.343 kb on - strand at 4561.343 kb on - strand at 4561.343 kb on - strand at 4561.343 kb on - strand at 4561.343 kb on - strand at 4561.431 kb on - strand at 4561.444 kb on + strand at 4561.454 kb on - strand at 4561.490 kb on - strand at 4561.490 kb on - strand at 4561.735 kb on + strand, within DDA3937_RS20045 at 4561.735 kb on + strand, within DDA3937_RS20045 at 4561.735 kb on + strand, within DDA3937_RS20045 at 4561.735 kb on + strand, within DDA3937_RS20045 at 4561.736 kb on - strand, within DDA3937_RS20045 at 4561.736 kb on - strand, within DDA3937_RS20045 at 4561.736 kb on - strand, within DDA3937_RS20045 at 4561.736 kb on - strand, within DDA3937_RS20045 at 4561.736 kb on - strand, within DDA3937_RS20045 at 4561.763 kb on - strand, within DDA3937_RS20045 at 4561.854 kb on - strand, within DDA3937_RS20045 at 4561.919 kb on + strand, within DDA3937_RS20045 at 4562.014 kb on - strand, within DDA3937_RS20045 at 4562.020 kb on + strand, within DDA3937_RS20045 at 4562.020 kb on + strand, within DDA3937_RS20045 at 4562.021 kb on - strand, within DDA3937_RS20045 at 4562.084 kb on + strand at 4562.085 kb on - strand at 4562.153 kb on + strand at 4562.153 kb on + strand at 4562.153 kb on + strand at 4562.153 kb on + strand at 4562.153 kb on + strand at 4562.153 kb on + strand at 4562.153 kb on + strand at 4562.153 kb on + strand at 4562.154 kb on - strand at 4562.154 kb on - strand at 4562.154 kb on - strand at 4562.154 kb on - strand at 4562.154 kb on - strand at 4562.154 kb on - strand at 4562.154 kb on - strand at 4562.154 kb on - strand at 4562.154 kb on - strand at 4562.154 kb on - strand at 4562.154 kb on - strand at 4562.154 kb on - strand at 4562.154 kb on - strand at 4562.154 kb on - strand at 4562.154 kb on - strand at 4562.326 kb on + strand at 4562.327 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 4,559,328 + DDA3937_RS20035 0.26 +1.8 4,559,328 + DDA3937_RS20035 0.26 +0.0 4,559,329 - DDA3937_RS20035 0.26 +0.1 4,559,329 - DDA3937_RS20035 0.26 -2.2 4,559,332 + DDA3937_RS20035 0.26 -0.9 4,559,332 + DDA3937_RS20035 0.26 -0.3 4,559,333 - DDA3937_RS20035 0.26 -0.8 4,559,333 - DDA3937_RS20035 0.26 -0.3 4,559,333 - DDA3937_RS20035 0.26 -1.3 4,559,333 - DDA3937_RS20035 0.26 -0.0 4,559,404 - DDA3937_RS20035 0.32 -1.9 4,559,435 + DDA3937_RS20035 0.34 -1.6 4,559,436 - DDA3937_RS20035 0.34 -0.1 4,559,436 - DDA3937_RS20035 0.34 +1.1 4,559,522 + DDA3937_RS20035 0.41 -0.5 4,559,522 + DDA3937_RS20035 0.41 -0.9 4,559,523 - DDA3937_RS20035 0.41 -3.5 4,559,555 + DDA3937_RS20035 0.44 -1.1 4,559,555 + DDA3937_RS20035 0.44 -0.2 4,559,598 + DDA3937_RS20035 0.47 -0.6 4,559,599 - DDA3937_RS20035 0.47 +0.2 4,559,684 - DDA3937_RS20035 0.54 -0.6 4,559,742 + DDA3937_RS20035 0.59 -1.3 4,559,744 + DDA3937_RS20035 0.59 -1.0 4,559,744 + DDA3937_RS20035 0.59 +0.8 4,559,744 + DDA3937_RS20035 0.59 -0.4 4,559,744 + DDA3937_RS20035 0.59 -0.8 4,559,745 - DDA3937_RS20035 0.59 +0.6 4,559,745 - DDA3937_RS20035 0.59 -1.0 4,559,745 - DDA3937_RS20035 0.59 -0.4 4,559,745 - DDA3937_RS20035 0.59 +0.7 4,559,772 - DDA3937_RS20035 0.61 -0.4 4,559,772 - DDA3937_RS20035 0.61 -1.4 4,560,061 + DDA3937_RS20035 0.84 +0.2 4,560,131 + DDA3937_RS20035 0.90 -0.1 4,560,131 + DDA3937_RS20035 0.90 -2.7 4,560,131 + DDA3937_RS20035 0.90 -0.0 4,560,132 - DDA3937_RS20035 0.90 -2.0 4,560,132 - DDA3937_RS20035 0.90 -0.5 4,560,293 + +3.6 4,560,320 - -0.6 4,560,320 - -0.0 4,560,320 - -0.9 4,560,320 - -1.3 4,560,363 - -0.5 4,560,425 + DDA3937_RS20040 0.15 -1.6 4,560,425 + DDA3937_RS20040 0.15 -0.4 4,560,425 + DDA3937_RS20040 0.15 -0.1 4,560,425 + DDA3937_RS20040 0.15 -0.4 4,560,426 - DDA3937_RS20040 0.15 +0.7 4,560,426 - DDA3937_RS20040 0.15 -1.1 4,560,426 - +0.1 4,560,426 - DDA3937_RS20040 0.15 +0.3 4,560,426 - DDA3937_RS20040 0.15 +0.0 4,560,426 - DDA3937_RS20040 0.15 -1.9 4,560,428 - DDA3937_RS20040 0.15 +1.4 4,560,461 + DDA3937_RS20040 0.18 -0.1 4,560,598 + DDA3937_RS20040 0.30 -1.3 4,560,598 + DDA3937_RS20040 0.30 -1.8 4,560,598 + DDA3937_RS20040 0.30 +0.5 4,560,598 + DDA3937_RS20040 0.30 -1.6 4,560,599 - DDA3937_RS20040 0.30 -1.0 4,560,599 - DDA3937_RS20040 0.30 -0.6 4,560,599 - DDA3937_RS20040 0.30 +0.0 4,560,665 - DDA3937_RS20040 0.36 -0.5 4,560,665 - DDA3937_RS20040 0.36 -1.0 4,560,665 - DDA3937_RS20040 0.36 +0.7 4,560,692 - DDA3937_RS20040 0.38 +0.1 4,560,716 + DDA3937_RS20040 0.40 -1.1 4,560,716 + DDA3937_RS20040 0.40 -2.3 4,560,716 + DDA3937_RS20040 0.40 +0.1 4,560,717 - DDA3937_RS20040 0.41 -1.3 4,560,717 - DDA3937_RS20040 0.41 -0.3 4,560,717 - DDA3937_RS20040 0.41 -1.1 4,560,718 + DDA3937_RS20040 0.41 +0.3 4,560,718 + DDA3937_RS20040 0.41 -0.6 4,560,718 + DDA3937_RS20040 0.41 -0.4 4,560,718 + DDA3937_RS20040 0.41 +0.3 4,560,718 + DDA3937_RS20040 0.41 +0.1 4,560,719 - DDA3937_RS20040 0.41 -1.0 4,560,719 - DDA3937_RS20040 0.41 +1.3 4,560,719 - DDA3937_RS20040 0.41 -1.0 4,560,719 - DDA3937_RS20040 0.41 -0.2 4,560,719 - DDA3937_RS20040 0.41 +0.0 4,560,719 - DDA3937_RS20040 0.41 -0.2 4,560,719 - DDA3937_RS20040 0.41 -0.3 4,560,719 - DDA3937_RS20040 0.41 -0.4 4,560,719 - DDA3937_RS20040 0.41 +0.5 4,560,719 - DDA3937_RS20040 0.41 -0.6 4,560,722 + DDA3937_RS20040 0.41 -0.9 4,560,723 - DDA3937_RS20040 0.41 -2.0 4,560,841 + DDA3937_RS20040 0.52 +0.0 4,560,841 + DDA3937_RS20040 0.52 -0.7 4,560,841 + DDA3937_RS20040 0.52 -0.3 4,560,908 - DDA3937_RS20040 0.57 +0.4 4,561,006 + DDA3937_RS20040 0.66 -0.1 4,561,007 - DDA3937_RS20040 0.66 +0.9 4,561,007 - DDA3937_RS20040 0.66 -0.5 4,561,153 + DDA3937_RS20040 0.79 +0.0 4,561,153 + DDA3937_RS20040 0.79 -2.3 4,561,154 - DDA3937_RS20040 0.79 -1.5 4,561,154 - DDA3937_RS20040 0.79 -2.1 4,561,154 - DDA3937_RS20040 0.79 -0.4 4,561,242 + DDA3937_RS20040 0.87 +0.2 4,561,242 + DDA3937_RS20040 0.87 -0.9 4,561,242 + DDA3937_RS20040 0.87 -0.6 4,561,243 - DDA3937_RS20040 0.87 -0.1 4,561,243 - DDA3937_RS20040 0.87 +0.5 4,561,262 - DDA3937_RS20040 0.89 -1.5 4,561,262 - DDA3937_RS20040 0.89 +0.2 4,561,340 + +1.3 4,561,340 + -2.0 4,561,340 + -0.3 4,561,340 + +0.6 4,561,341 - -0.3 4,561,341 - +0.4 4,561,341 - -1.3 4,561,341 - +0.2 4,561,341 - -2.6 4,561,341 - -0.3 4,561,341 - -1.1 4,561,341 - +1.2 4,561,341 - -0.6 4,561,342 + -0.6 4,561,342 + +1.4 4,561,342 + +0.9 4,561,343 - -1.0 4,561,343 - -1.5 4,561,343 - -0.9 4,561,343 - -0.6 4,561,343 - -0.0 4,561,343 - +0.9 4,561,343 - +2.5 4,561,431 - -0.0 4,561,444 + -0.1 4,561,454 - -0.6 4,561,490 - -0.7 4,561,490 - -0.3 4,561,735 + DDA3937_RS20045 0.42 -0.4 4,561,735 + DDA3937_RS20045 0.42 -1.3 4,561,735 + DDA3937_RS20045 0.42 +0.7 4,561,735 + DDA3937_RS20045 0.42 -0.1 4,561,736 - DDA3937_RS20045 0.42 +1.7 4,561,736 - DDA3937_RS20045 0.42 +0.9 4,561,736 - DDA3937_RS20045 0.42 -0.1 4,561,736 - DDA3937_RS20045 0.42 -0.1 4,561,736 - DDA3937_RS20045 0.42 -0.5 4,561,763 - DDA3937_RS20045 0.45 -1.1 4,561,854 - DDA3937_RS20045 0.58 -0.1 4,561,919 + DDA3937_RS20045 0.67 +0.7 4,562,014 - DDA3937_RS20045 0.80 +0.6 4,562,020 + DDA3937_RS20045 0.81 +1.1 4,562,020 + DDA3937_RS20045 0.81 -0.0 4,562,021 - DDA3937_RS20045 0.81 -0.1 4,562,084 + -0.4 4,562,085 - -1.1 4,562,153 + -1.5 4,562,153 + -0.8 4,562,153 + -0.9 4,562,153 + -0.7 4,562,153 + -0.1 4,562,153 + -0.4 4,562,153 + -0.9 4,562,153 + -1.4 4,562,154 - -0.9 4,562,154 - +1.2 4,562,154 - -0.1 4,562,154 - -0.2 4,562,154 - +0.2 4,562,154 - -0.2 4,562,154 - -0.8 4,562,154 - -0.1 4,562,154 - -0.3 4,562,154 - -0.0 4,562,154 - +0.4 4,562,154 - -0.5 4,562,154 - +0.8 4,562,154 - -0.3 4,562,154 - +0.4 4,562,326 + -0.6 4,562,327 - -1.4
Or see this region's nucleotide sequence