Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS19045 and DDA3937_RS19050 are separated by 9 nucleotides DDA3937_RS19050 and DDA3937_RS19055 are separated by 75 nucleotides
DDA3937_RS19045: DDA3937_RS19045 - glyoxylate bypass operon transcriptional repressor IclR, at 4,355,311 to 4,356,141
_RS19045
DDA3937_RS19050: DDA3937_RS19050 - bifunctional isocitrate dehydrogenase kinase/phosphatase, at 4,356,151 to 4,357,908
_RS19050
DDA3937_RS19055: DDA3937_RS19055 - isocitrate lyase, at 4,357,984 to 4,359,291
_RS19055
Position (kb) 4356
4357
4358 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 4355.153 kb on - strand at 4355.153 kb on - strand at 4355.153 kb on - strand at 4355.187 kb on - strand at 4355.221 kb on - strand at 4355.231 kb on + strand at 4355.232 kb on - strand at 4355.265 kb on + strand at 4355.291 kb on + strand at 4355.292 kb on - strand at 4355.292 kb on - strand at 4355.390 kb on + strand at 4355.390 kb on + strand at 4355.391 kb on - strand at 4355.391 kb on - strand at 4355.391 kb on - strand at 4355.425 kb on + strand, within DDA3937_RS19045 at 4355.426 kb on - strand, within DDA3937_RS19045 at 4355.514 kb on + strand, within DDA3937_RS19045 at 4355.514 kb on + strand, within DDA3937_RS19045 at 4355.514 kb on + strand, within DDA3937_RS19045 at 4355.587 kb on - strand, within DDA3937_RS19045 at 4355.617 kb on - strand, within DDA3937_RS19045 at 4355.617 kb on - strand, within DDA3937_RS19045 at 4355.617 kb on - strand, within DDA3937_RS19045 at 4355.708 kb on - strand, within DDA3937_RS19045 at 4355.718 kb on + strand, within DDA3937_RS19045 at 4355.718 kb on + strand, within DDA3937_RS19045 at 4355.718 kb on + strand, within DDA3937_RS19045 at 4355.719 kb on - strand, within DDA3937_RS19045 at 4355.719 kb on - strand, within DDA3937_RS19045 at 4355.875 kb on + strand, within DDA3937_RS19045 at 4355.875 kb on + strand, within DDA3937_RS19045 at 4355.875 kb on + strand, within DDA3937_RS19045 at 4355.875 kb on + strand, within DDA3937_RS19045 at 4355.875 kb on + strand, within DDA3937_RS19045 at 4355.875 kb on + strand, within DDA3937_RS19045 at 4355.876 kb on - strand, within DDA3937_RS19045 at 4355.876 kb on - strand, within DDA3937_RS19045 at 4355.876 kb on - strand, within DDA3937_RS19045 at 4355.876 kb on - strand, within DDA3937_RS19045 at 4355.876 kb on - strand, within DDA3937_RS19045 at 4355.877 kb on + strand, within DDA3937_RS19045 at 4355.877 kb on + strand, within DDA3937_RS19045 at 4355.877 kb on + strand, within DDA3937_RS19045 at 4355.877 kb on + strand, within DDA3937_RS19045 at 4355.878 kb on - strand, within DDA3937_RS19045 at 4356.114 kb on + strand at 4356.114 kb on + strand at 4356.114 kb on + strand at 4356.115 kb on - strand at 4356.115 kb on - strand at 4356.115 kb on - strand at 4356.115 kb on - strand at 4356.115 kb on - strand at 4356.118 kb on + strand at 4356.118 kb on + strand at 4356.118 kb on + strand at 4356.118 kb on + strand at 4356.119 kb on - strand at 4356.191 kb on + strand at 4356.196 kb on + strand at 4356.196 kb on + strand at 4356.196 kb on + strand at 4356.196 kb on + strand at 4356.196 kb on + strand at 4356.197 kb on - strand at 4356.197 kb on - strand at 4356.197 kb on - strand at 4356.197 kb on - strand at 4356.197 kb on - strand at 4356.197 kb on - strand at 4356.197 kb on - strand at 4356.197 kb on - strand at 4356.197 kb on - strand at 4356.221 kb on + strand at 4356.390 kb on + strand, within DDA3937_RS19050 at 4356.392 kb on + strand, within DDA3937_RS19050 at 4356.393 kb on - strand, within DDA3937_RS19050 at 4356.467 kb on + strand, within DDA3937_RS19050 at 4356.467 kb on + strand, within DDA3937_RS19050 at 4356.468 kb on - strand, within DDA3937_RS19050 at 4356.468 kb on - strand, within DDA3937_RS19050 at 4356.482 kb on + strand, within DDA3937_RS19050 at 4356.483 kb on - strand, within DDA3937_RS19050 at 4356.483 kb on - strand, within DDA3937_RS19050 at 4356.497 kb on - strand, within DDA3937_RS19050 at 4356.537 kb on + strand, within DDA3937_RS19050 at 4356.538 kb on - strand, within DDA3937_RS19050 at 4356.552 kb on + strand, within DDA3937_RS19050 at 4356.553 kb on - strand, within DDA3937_RS19050 at 4356.588 kb on - strand, within DDA3937_RS19050 at 4356.635 kb on + strand, within DDA3937_RS19050 at 4356.635 kb on + strand, within DDA3937_RS19050 at 4356.636 kb on - strand, within DDA3937_RS19050 at 4356.636 kb on - strand at 4356.668 kb on + strand, within DDA3937_RS19050 at 4356.668 kb on + strand, within DDA3937_RS19050 at 4356.668 kb on + strand, within DDA3937_RS19050 at 4356.669 kb on - strand, within DDA3937_RS19050 at 4356.669 kb on - strand, within DDA3937_RS19050 at 4356.730 kb on + strand, within DDA3937_RS19050 at 4356.730 kb on + strand, within DDA3937_RS19050 at 4356.731 kb on - strand, within DDA3937_RS19050 at 4356.785 kb on + strand, within DDA3937_RS19050 at 4356.786 kb on - strand, within DDA3937_RS19050 at 4356.786 kb on - strand, within DDA3937_RS19050 at 4356.786 kb on - strand, within DDA3937_RS19050 at 4356.840 kb on - strand, within DDA3937_RS19050 at 4356.973 kb on - strand, within DDA3937_RS19050 at 4356.987 kb on + strand, within DDA3937_RS19050 at 4356.987 kb on + strand, within DDA3937_RS19050 at 4356.988 kb on - strand, within DDA3937_RS19050 at 4357.020 kb on - strand, within DDA3937_RS19050 at 4357.020 kb on - strand, within DDA3937_RS19050 at 4357.131 kb on - strand, within DDA3937_RS19050 at 4357.131 kb on - strand, within DDA3937_RS19050 at 4357.142 kb on + strand, within DDA3937_RS19050 at 4357.143 kb on - strand, within DDA3937_RS19050 at 4357.143 kb on - strand, within DDA3937_RS19050 at 4357.168 kb on - strand, within DDA3937_RS19050 at 4357.168 kb on - strand, within DDA3937_RS19050 at 4357.168 kb on - strand, within DDA3937_RS19050 at 4357.203 kb on + strand, within DDA3937_RS19050 at 4357.204 kb on - strand, within DDA3937_RS19050 at 4357.299 kb on + strand, within DDA3937_RS19050 at 4357.299 kb on + strand, within DDA3937_RS19050 at 4357.304 kb on + strand, within DDA3937_RS19050 at 4357.385 kb on + strand, within DDA3937_RS19050 at 4357.386 kb on - strand, within DDA3937_RS19050 at 4357.386 kb on - strand, within DDA3937_RS19050 at 4357.386 kb on - strand, within DDA3937_RS19050 at 4357.386 kb on - strand, within DDA3937_RS19050 at 4357.575 kb on + strand, within DDA3937_RS19050 at 4357.589 kb on + strand, within DDA3937_RS19050 at 4357.589 kb on + strand, within DDA3937_RS19050 at 4357.590 kb on - strand, within DDA3937_RS19050 at 4357.590 kb on - strand, within DDA3937_RS19050 at 4357.590 kb on - strand, within DDA3937_RS19050 at 4357.631 kb on + strand, within DDA3937_RS19050 at 4357.631 kb on + strand, within DDA3937_RS19050 at 4357.652 kb on + strand, within DDA3937_RS19050 at 4357.652 kb on + strand, within DDA3937_RS19050 at 4357.652 kb on + strand, within DDA3937_RS19050 at 4357.652 kb on + strand, within DDA3937_RS19050 at 4357.652 kb on + strand, within DDA3937_RS19050 at 4357.652 kb on + strand, within DDA3937_RS19050 at 4357.653 kb on - strand, within DDA3937_RS19050 at 4357.653 kb on - strand, within DDA3937_RS19050 at 4357.688 kb on + strand, within DDA3937_RS19050 at 4357.688 kb on + strand, within DDA3937_RS19050 at 4357.748 kb on + strand at 4357.847 kb on + strand at 4357.935 kb on + strand at 4357.935 kb on + strand at 4357.936 kb on - strand at 4357.940 kb on + strand at 4357.940 kb on + strand at 4357.940 kb on + strand at 4357.941 kb on - strand at 4357.941 kb on - strand at 4357.941 kb on - strand at 4357.941 kb on - strand at 4357.941 kb on - strand at 4357.975 kb on - strand at 4358.069 kb on + strand at 4358.070 kb on - strand at 4358.106 kb on + strand at 4358.106 kb on + strand at 4358.106 kb on + strand at 4358.106 kb on + strand at 4358.106 kb on + strand at 4358.106 kb on + strand at 4358.106 kb on + strand at 4358.107 kb on - strand at 4358.107 kb on - strand at 4358.107 kb on - strand at 4358.108 kb on + strand at 4358.109 kb on - strand at 4358.144 kb on - strand, within DDA3937_RS19055 at 4358.144 kb on - strand, within DDA3937_RS19055 at 4358.156 kb on + strand, within DDA3937_RS19055 at 4358.157 kb on - strand, within DDA3937_RS19055 at 4358.157 kb on - strand, within DDA3937_RS19055 at 4358.183 kb on + strand, within DDA3937_RS19055 at 4358.183 kb on + strand, within DDA3937_RS19055 at 4358.183 kb on + strand, within DDA3937_RS19055 at 4358.184 kb on - strand, within DDA3937_RS19055 at 4358.184 kb on - strand, within DDA3937_RS19055 at 4358.184 kb on - strand, within DDA3937_RS19055 at 4358.184 kb on - strand, within DDA3937_RS19055 at 4358.250 kb on - strand, within DDA3937_RS19055 at 4358.255 kb on + strand, within DDA3937_RS19055 at 4358.255 kb on + strand, within DDA3937_RS19055 at 4358.342 kb on + strand, within DDA3937_RS19055 at 4358.343 kb on - strand, within DDA3937_RS19055 at 4358.453 kb on + strand, within DDA3937_RS19055 at 4358.454 kb on - strand, within DDA3937_RS19055 at 4358.501 kb on + strand, within DDA3937_RS19055 at 4358.501 kb on + strand, within DDA3937_RS19055 at 4358.501 kb on + strand, within DDA3937_RS19055 at 4358.546 kb on + strand, within DDA3937_RS19055 at 4358.592 kb on + strand, within DDA3937_RS19055 at 4358.697 kb on + strand, within DDA3937_RS19055
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 4,355,153 - -0.7 4,355,153 - -0.6 4,355,153 - -0.9 4,355,187 - +0.5 4,355,221 - +0.4 4,355,231 + +0.3 4,355,232 - -0.0 4,355,265 + -0.6 4,355,291 + +0.7 4,355,292 - -0.3 4,355,292 - -1.4 4,355,390 + -0.5 4,355,390 + -0.5 4,355,391 - -1.9 4,355,391 - +0.3 4,355,391 - -0.5 4,355,425 + DDA3937_RS19045 0.14 +0.7 4,355,426 - DDA3937_RS19045 0.14 -0.2 4,355,514 + DDA3937_RS19045 0.24 -0.0 4,355,514 + DDA3937_RS19045 0.24 -1.2 4,355,514 + DDA3937_RS19045 0.24 -1.5 4,355,587 - DDA3937_RS19045 0.33 -1.4 4,355,617 - DDA3937_RS19045 0.37 -0.2 4,355,617 - DDA3937_RS19045 0.37 +1.7 4,355,617 - DDA3937_RS19045 0.37 +2.8 4,355,708 - DDA3937_RS19045 0.48 -0.6 4,355,718 + DDA3937_RS19045 0.49 -0.6 4,355,718 + DDA3937_RS19045 0.49 +1.1 4,355,718 + DDA3937_RS19045 0.49 -3.7 4,355,719 - DDA3937_RS19045 0.49 +0.5 4,355,719 - DDA3937_RS19045 0.49 +0.3 4,355,875 + DDA3937_RS19045 0.68 +1.5 4,355,875 + DDA3937_RS19045 0.68 -0.9 4,355,875 + DDA3937_RS19045 0.68 +1.7 4,355,875 + DDA3937_RS19045 0.68 -1.2 4,355,875 + DDA3937_RS19045 0.68 -0.4 4,355,875 + DDA3937_RS19045 0.68 +0.5 4,355,876 - DDA3937_RS19045 0.68 -0.1 4,355,876 - DDA3937_RS19045 0.68 +0.3 4,355,876 - DDA3937_RS19045 0.68 -0.6 4,355,876 - DDA3937_RS19045 0.68 -0.3 4,355,876 - DDA3937_RS19045 0.68 +1.9 4,355,877 + DDA3937_RS19045 0.68 -0.6 4,355,877 + DDA3937_RS19045 0.68 +0.7 4,355,877 + DDA3937_RS19045 0.68 +1.5 4,355,877 + DDA3937_RS19045 0.68 +1.8 4,355,878 - DDA3937_RS19045 0.68 -1.0 4,356,114 + +0.0 4,356,114 + -0.3 4,356,114 + +1.1 4,356,115 - +1.2 4,356,115 - -0.9 4,356,115 - -1.3 4,356,115 - -0.2 4,356,115 - +3.7 4,356,118 + +0.6 4,356,118 + +1.1 4,356,118 + -1.3 4,356,118 + +0.2 4,356,119 - +1.8 4,356,191 + -0.9 4,356,196 + -1.2 4,356,196 + -0.2 4,356,196 + +1.7 4,356,196 + -1.8 4,356,196 + +0.1 4,356,197 - -0.2 4,356,197 - -0.3 4,356,197 - +0.7 4,356,197 - -0.3 4,356,197 - +0.1 4,356,197 - +1.1 4,356,197 - -2.7 4,356,197 - +1.1 4,356,197 - +2.2 4,356,221 + -0.2 4,356,390 + DDA3937_RS19050 0.14 -2.0 4,356,392 + DDA3937_RS19050 0.14 -0.6 4,356,393 - DDA3937_RS19050 0.14 +0.9 4,356,467 + DDA3937_RS19050 0.18 -1.1 4,356,467 + DDA3937_RS19050 0.18 -1.3 4,356,468 - DDA3937_RS19050 0.18 +0.3 4,356,468 - DDA3937_RS19050 0.18 +0.7 4,356,482 + DDA3937_RS19050 0.19 -0.5 4,356,483 - DDA3937_RS19050 0.19 -2.3 4,356,483 - DDA3937_RS19050 0.19 -0.8 4,356,497 - DDA3937_RS19050 0.20 +0.7 4,356,537 + DDA3937_RS19050 0.22 -1.5 4,356,538 - DDA3937_RS19050 0.22 +0.2 4,356,552 + DDA3937_RS19050 0.23 +0.1 4,356,553 - DDA3937_RS19050 0.23 -0.1 4,356,588 - DDA3937_RS19050 0.25 -1.4 4,356,635 + DDA3937_RS19050 0.28 -1.3 4,356,635 + DDA3937_RS19050 0.28 -1.7 4,356,636 - DDA3937_RS19050 0.28 +1.7 4,356,636 - +2.7 4,356,668 + DDA3937_RS19050 0.29 +0.8 4,356,668 + DDA3937_RS19050 0.29 +2.7 4,356,668 + DDA3937_RS19050 0.29 +0.5 4,356,669 - DDA3937_RS19050 0.29 +1.7 4,356,669 - DDA3937_RS19050 0.29 +0.4 4,356,730 + DDA3937_RS19050 0.33 -0.8 4,356,730 + DDA3937_RS19050 0.33 -1.0 4,356,731 - DDA3937_RS19050 0.33 -1.7 4,356,785 + DDA3937_RS19050 0.36 -2.5 4,356,786 - DDA3937_RS19050 0.36 +0.1 4,356,786 - DDA3937_RS19050 0.36 +0.4 4,356,786 - DDA3937_RS19050 0.36 +0.2 4,356,840 - DDA3937_RS19050 0.39 -0.7 4,356,973 - DDA3937_RS19050 0.47 +0.4 4,356,987 + DDA3937_RS19050 0.48 -0.4 4,356,987 + DDA3937_RS19050 0.48 -1.3 4,356,988 - DDA3937_RS19050 0.48 -0.1 4,357,020 - DDA3937_RS19050 0.49 -0.3 4,357,020 - DDA3937_RS19050 0.49 -1.0 4,357,131 - DDA3937_RS19050 0.56 -2.2 4,357,131 - DDA3937_RS19050 0.56 +0.4 4,357,142 + DDA3937_RS19050 0.56 +0.2 4,357,143 - DDA3937_RS19050 0.56 -1.0 4,357,143 - DDA3937_RS19050 0.56 -0.8 4,357,168 - DDA3937_RS19050 0.58 +0.9 4,357,168 - DDA3937_RS19050 0.58 -0.5 4,357,168 - DDA3937_RS19050 0.58 +0.7 4,357,203 + DDA3937_RS19050 0.60 -2.3 4,357,204 - DDA3937_RS19050 0.60 +0.2 4,357,299 + DDA3937_RS19050 0.65 -0.3 4,357,299 + DDA3937_RS19050 0.65 +1.7 4,357,304 + DDA3937_RS19050 0.66 +0.7 4,357,385 + DDA3937_RS19050 0.70 -0.7 4,357,386 - DDA3937_RS19050 0.70 -0.9 4,357,386 - DDA3937_RS19050 0.70 +0.1 4,357,386 - DDA3937_RS19050 0.70 +0.3 4,357,386 - DDA3937_RS19050 0.70 -0.1 4,357,575 + DDA3937_RS19050 0.81 +0.1 4,357,589 + DDA3937_RS19050 0.82 +0.3 4,357,589 + DDA3937_RS19050 0.82 -0.9 4,357,590 - DDA3937_RS19050 0.82 +0.9 4,357,590 - DDA3937_RS19050 0.82 +0.6 4,357,590 - DDA3937_RS19050 0.82 +0.6 4,357,631 + DDA3937_RS19050 0.84 -0.5 4,357,631 + DDA3937_RS19050 0.84 -0.2 4,357,652 + DDA3937_RS19050 0.85 +0.6 4,357,652 + DDA3937_RS19050 0.85 +0.3 4,357,652 + DDA3937_RS19050 0.85 +1.4 4,357,652 + DDA3937_RS19050 0.85 -0.5 4,357,652 + DDA3937_RS19050 0.85 -1.6 4,357,652 + DDA3937_RS19050 0.85 -0.3 4,357,653 - DDA3937_RS19050 0.85 +0.4 4,357,653 - DDA3937_RS19050 0.85 +0.1 4,357,688 + DDA3937_RS19050 0.87 +0.4 4,357,688 + DDA3937_RS19050 0.87 -1.5 4,357,748 + +0.1 4,357,847 + +0.3 4,357,935 + -1.2 4,357,935 + -0.3 4,357,936 - -1.3 4,357,940 + -0.7 4,357,940 + -2.0 4,357,940 + +0.5 4,357,941 - -0.4 4,357,941 - +0.5 4,357,941 - -0.4 4,357,941 - +1.0 4,357,941 - -1.1 4,357,975 - -1.0 4,358,069 + -1.5 4,358,070 - -0.6 4,358,106 + +4.5 4,358,106 + +0.5 4,358,106 + -2.1 4,358,106 + +0.3 4,358,106 + +1.2 4,358,106 + -1.9 4,358,106 + -1.4 4,358,107 - -0.4 4,358,107 - -0.9 4,358,107 - -0.6 4,358,108 + +6.2 4,358,109 - +0.7 4,358,144 - DDA3937_RS19055 0.12 -0.7 4,358,144 - DDA3937_RS19055 0.12 -0.3 4,358,156 + DDA3937_RS19055 0.13 -0.4 4,358,157 - DDA3937_RS19055 0.13 -0.8 4,358,157 - DDA3937_RS19055 0.13 -0.7 4,358,183 + DDA3937_RS19055 0.15 -1.2 4,358,183 + DDA3937_RS19055 0.15 +2.8 4,358,183 + DDA3937_RS19055 0.15 +2.9 4,358,184 - DDA3937_RS19055 0.15 -1.5 4,358,184 - DDA3937_RS19055 0.15 +0.3 4,358,184 - DDA3937_RS19055 0.15 -0.3 4,358,184 - DDA3937_RS19055 0.15 -0.0 4,358,250 - DDA3937_RS19055 0.20 -2.6 4,358,255 + DDA3937_RS19055 0.21 -0.7 4,358,255 + DDA3937_RS19055 0.21 +0.3 4,358,342 + DDA3937_RS19055 0.27 -0.4 4,358,343 - DDA3937_RS19055 0.27 -1.1 4,358,453 + DDA3937_RS19055 0.36 -0.3 4,358,454 - DDA3937_RS19055 0.36 -2.3 4,358,501 + DDA3937_RS19055 0.40 -0.8 4,358,501 + DDA3937_RS19055 0.40 +0.5 4,358,501 + DDA3937_RS19055 0.40 -0.3 4,358,546 + DDA3937_RS19055 0.43 -1.5 4,358,592 + DDA3937_RS19055 0.46 -0.7 4,358,697 + DDA3937_RS19055 0.55 -0.7
Or see this region's nucleotide sequence