Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18830 and DDA3937_RS18835 are separated by 14 nucleotides DDA3937_RS18835 and DDA3937_RS18840 overlap by 17 nucleotides DDA3937_RS18840 and DDA3937_RS18845 are separated by 4 nucleotides
DDA3937_RS18830: DDA3937_RS18830 - nitrogen fixation protein NifM, at 4,303,342 to 4,304,136
_RS18830
DDA3937_RS18835: DDA3937_RS18835 - nitrogen fixation protein NifZ, at 4,304,151 to 4,304,594
_RS18835
DDA3937_RS18840: DDA3937_RS18840 - nitrogen fixation protein NifW, at 4,304,578 to 4,304,847
_RS18840
DDA3937_RS18845: DDA3937_RS18845 - homocitrate synthase, at 4,304,852 to 4,306,000
_RS18845
Position (kb)
4304
4305 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4303.672 kb on + strand, within DDA3937_RS18830 at 4303.672 kb on + strand, within DDA3937_RS18830 at 4303.672 kb on + strand, within DDA3937_RS18830 at 4303.672 kb on + strand, within DDA3937_RS18830 at 4303.672 kb on + strand, within DDA3937_RS18830 at 4303.672 kb on + strand, within DDA3937_RS18830 at 4303.672 kb on + strand, within DDA3937_RS18830 at 4303.673 kb on - strand, within DDA3937_RS18830 at 4303.673 kb on - strand, within DDA3937_RS18830 at 4303.673 kb on - strand, within DDA3937_RS18830 at 4303.673 kb on - strand, within DDA3937_RS18830 at 4303.673 kb on - strand, within DDA3937_RS18830 at 4304.059 kb on + strand at 4304.059 kb on + strand at 4304.060 kb on - strand at 4304.173 kb on + strand at 4304.173 kb on + strand at 4304.173 kb on + strand at 4304.174 kb on - strand at 4304.174 kb on - strand at 4304.174 kb on - strand at 4304.434 kb on + strand, within DDA3937_RS18835 at 4304.434 kb on + strand, within DDA3937_RS18835 at 4304.434 kb on + strand, within DDA3937_RS18835 at 4304.434 kb on + strand, within DDA3937_RS18835 at 4304.435 kb on - strand, within DDA3937_RS18835 at 4304.435 kb on - strand, within DDA3937_RS18835 at 4304.435 kb on - strand, within DDA3937_RS18835 at 4304.457 kb on + strand, within DDA3937_RS18835 at 4304.457 kb on + strand, within DDA3937_RS18835 at 4304.458 kb on - strand, within DDA3937_RS18835 at 4304.458 kb on - strand, within DDA3937_RS18835 at 4304.476 kb on + strand, within DDA3937_RS18835 at 4304.476 kb on + strand, within DDA3937_RS18835 at 4304.477 kb on - strand, within DDA3937_RS18835 at 4304.541 kb on - strand, within DDA3937_RS18835 at 4304.621 kb on + strand, within DDA3937_RS18840 at 4304.622 kb on - strand, within DDA3937_RS18840 at 4304.685 kb on + strand, within DDA3937_RS18840 at 4304.685 kb on + strand, within DDA3937_RS18840 at 4304.686 kb on - strand, within DDA3937_RS18840 at 4304.753 kb on - strand at 4304.768 kb on + strand, within DDA3937_RS18840 at 4304.834 kb on + strand at 4304.835 kb on - strand at 4304.835 kb on - strand at 4304.835 kb on - strand at 4304.901 kb on + strand at 4304.901 kb on + strand at 4304.902 kb on - strand at 4304.902 kb on - strand at 4304.902 kb on - strand at 4304.902 kb on - strand at 4305.105 kb on + strand at 4305.105 kb on + strand, within DDA3937_RS18845 at 4305.105 kb on + strand, within DDA3937_RS18845 at 4305.106 kb on - strand, within DDA3937_RS18845 at 4305.346 kb on + strand, within DDA3937_RS18845 at 4305.347 kb on - strand, within DDA3937_RS18845 at 4305.474 kb on + strand, within DDA3937_RS18845 at 4305.474 kb on + strand, within DDA3937_RS18845 at 4305.475 kb on - strand, within DDA3937_RS18845 at 4305.475 kb on - strand, within DDA3937_RS18845 at 4305.475 kb on - strand, within DDA3937_RS18845 at 4305.832 kb on + strand, within DDA3937_RS18845 at 4305.832 kb on + strand, within DDA3937_RS18845 at 4305.832 kb on + strand, within DDA3937_RS18845 at 4305.833 kb on - strand, within DDA3937_RS18845
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 4,303,672 + DDA3937_RS18830 0.42 -0.1 4,303,672 + DDA3937_RS18830 0.42 +0.3 4,303,672 + DDA3937_RS18830 0.42 -0.8 4,303,672 + DDA3937_RS18830 0.42 -0.2 4,303,672 + DDA3937_RS18830 0.42 -0.3 4,303,672 + DDA3937_RS18830 0.42 +0.5 4,303,672 + DDA3937_RS18830 0.42 +0.2 4,303,673 - DDA3937_RS18830 0.42 -0.2 4,303,673 - DDA3937_RS18830 0.42 -0.2 4,303,673 - DDA3937_RS18830 0.42 +0.9 4,303,673 - DDA3937_RS18830 0.42 +0.2 4,303,673 - DDA3937_RS18830 0.42 -2.7 4,304,059 + +1.1 4,304,059 + +1.8 4,304,060 - -0.0 4,304,173 + +1.5 4,304,173 + +0.3 4,304,173 + -0.2 4,304,174 - +1.6 4,304,174 - +0.3 4,304,174 - -0.9 4,304,434 + DDA3937_RS18835 0.64 -0.9 4,304,434 + DDA3937_RS18835 0.64 -0.3 4,304,434 + DDA3937_RS18835 0.64 +1.6 4,304,434 + DDA3937_RS18835 0.64 -0.4 4,304,435 - DDA3937_RS18835 0.64 -0.3 4,304,435 - DDA3937_RS18835 0.64 -0.9 4,304,435 - DDA3937_RS18835 0.64 -1.2 4,304,457 + DDA3937_RS18835 0.69 -0.1 4,304,457 + DDA3937_RS18835 0.69 -1.4 4,304,458 - DDA3937_RS18835 0.69 -0.1 4,304,458 - DDA3937_RS18835 0.69 -0.4 4,304,476 + DDA3937_RS18835 0.73 -1.3 4,304,476 + DDA3937_RS18835 0.73 +1.4 4,304,477 - DDA3937_RS18835 0.73 +0.9 4,304,541 - DDA3937_RS18835 0.88 -0.4 4,304,621 + DDA3937_RS18840 0.16 -1.4 4,304,622 - DDA3937_RS18840 0.16 -0.5 4,304,685 + DDA3937_RS18840 0.40 -3.3 4,304,685 + DDA3937_RS18840 0.40 -1.2 4,304,686 - DDA3937_RS18840 0.40 -0.3 4,304,753 - +0.3 4,304,768 + DDA3937_RS18840 0.70 -1.4 4,304,834 + -0.2 4,304,835 - -1.7 4,304,835 - -1.4 4,304,835 - -1.2 4,304,901 + +0.6 4,304,901 + +1.0 4,304,902 - +0.5 4,304,902 - +0.3 4,304,902 - +0.6 4,304,902 - -0.1 4,305,105 + -0.4 4,305,105 + DDA3937_RS18845 0.22 -0.9 4,305,105 + DDA3937_RS18845 0.22 -1.9 4,305,106 - DDA3937_RS18845 0.22 -0.5 4,305,346 + DDA3937_RS18845 0.43 -0.2 4,305,347 - DDA3937_RS18845 0.43 -0.1 4,305,474 + DDA3937_RS18845 0.54 -2.2 4,305,474 + DDA3937_RS18845 0.54 -2.1 4,305,475 - DDA3937_RS18845 0.54 -0.1 4,305,475 - DDA3937_RS18845 0.54 -0.8 4,305,475 - DDA3937_RS18845 0.54 +1.2 4,305,832 + DDA3937_RS18845 0.85 -0.7 4,305,832 + DDA3937_RS18845 0.85 -1.9 4,305,832 + DDA3937_RS18845 0.85 +0.4 4,305,833 - DDA3937_RS18845 0.85 +1.3
Or see this region's nucleotide sequence