Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17455

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,969,816	-				-0.4
3,970,028	-		DDA3937_RS17450	0.18	-0.3
3,970,031	+		DDA3937_RS17450	0.18	+0.2
3,970,031	+		DDA3937_RS17450	0.18	-0.5
3,970,031	+		DDA3937_RS17450	0.18	-0.7
3,970,032	-		DDA3937_RS17450	0.18	+0.2
3,970,328	+		DDA3937_RS17450	0.54	-3.1
3,970,329	-		DDA3937_RS17450	0.54	-0.4
3,970,329	-		DDA3937_RS17450	0.54	+0.7
3,970,329	-		DDA3937_RS17450	0.54	+1.2
3,970,369	-		DDA3937_RS17450	0.59	+0.2
3,970,406	+		DDA3937_RS17450	0.64	-1.6
3,970,406	+		DDA3937_RS17450	0.64	+0.7
3,970,407	-		DDA3937_RS17450	0.64	-2.2
3,970,407	-		DDA3937_RS17450	0.64	-0.1
3,970,428	-		DDA3937_RS17450	0.66	-0.5
3,970,538	-		DDA3937_RS17450	0.80	-0.8
3,970,540	-		DDA3937_RS17450	0.80	+1.3
3,970,540	-		DDA3937_RS17450	0.80	+2.3
3,970,540	-		DDA3937_RS17450	0.80	-0.8
3,970,559	+		DDA3937_RS17450	0.82	+0.5
3,970,559	+		DDA3937_RS17450	0.82	-0.4
3,970,559	+		DDA3937_RS17450	0.82	-1.9
3,970,559	+		DDA3937_RS17450	0.82	-0.0
3,970,559	+		DDA3937_RS17450	0.82	-0.6
3,970,559	+		DDA3937_RS17450	0.82	+3.0
3,970,560	-		DDA3937_RS17450	0.82	+0.5
3,970,560	-		DDA3937_RS17450	0.82	+0.8
3,970,560	-		DDA3937_RS17450	0.82	-0.8
3,970,601	+		DDA3937_RS17450	0.87	+0.5
3,970,829	+				+0.5
3,970,829	+				-0.5
3,970,830	-				+1.1
3,970,830	-				-0.2
3,970,830	-				-0.3
3,970,830	-				-0.8
3,970,946	+		DDA3937_RS17455	0.21	-0.4
3,970,947	-		DDA3937_RS17455	0.21	-1.5
3,970,985	+		DDA3937_RS17455	0.25	+0.1
3,970,985	+		DDA3937_RS17455	0.25	-2.0
3,970,985	+		DDA3937_RS17455	0.25	+0.3
3,970,986	-		DDA3937_RS17455	0.25	-1.1
3,970,986	-		DDA3937_RS17455	0.25	-2.0
3,971,041	+		DDA3937_RS17455	0.30	-1.9
3,971,041	+		DDA3937_RS17455	0.30	-0.8
3,971,042	-		DDA3937_RS17455	0.30	-0.6
3,971,042	-		DDA3937_RS17455	0.30	+0.7
3,971,042	-		DDA3937_RS17455	0.30	+0.5
3,971,042	-		DDA3937_RS17455	0.30	-0.3
3,971,042	-		DDA3937_RS17455	0.30	-0.9
3,971,042	-		DDA3937_RS17455	0.30	-1.3
3,971,098	+		DDA3937_RS17455	0.35	-2.0
3,971,098	+		DDA3937_RS17455	0.35	+1.0
3,971,300	+		DDA3937_RS17455	0.55	-1.0
3,971,300	+		DDA3937_RS17455	0.55	+0.2
3,971,300	+		DDA3937_RS17455	0.55	-1.5
3,971,300	+		DDA3937_RS17455	0.55	+1.1
3,971,300	+		DDA3937_RS17455	0.55	-1.5
3,971,301	-		DDA3937_RS17455	0.55	-2.2
3,971,301	-		DDA3937_RS17455	0.55	+1.1
3,971,301	-		DDA3937_RS17455	0.55	+0.0
3,971,301	-		DDA3937_RS17455	0.55	+0.1
3,971,301	-		DDA3937_RS17455	0.55	-1.3
3,971,301	-		DDA3937_RS17455	0.55	+2.1
3,971,301	-		DDA3937_RS17455	0.55	-0.5
3,971,301	-		DDA3937_RS17455	0.55	-0.1
3,971,301	-		DDA3937_RS17455	0.55	+0.5
3,971,328	+		DDA3937_RS17455	0.57	-1.0
3,971,329	-		DDA3937_RS17455	0.57	+3.0
3,971,329	-		DDA3937_RS17455	0.57	+0.5
3,971,344	+		DDA3937_RS17455	0.59	+0.1
3,971,344	+		DDA3937_RS17455	0.59	+2.2
3,971,344	+		DDA3937_RS17455	0.59	-1.1
3,971,344	+		DDA3937_RS17455	0.59	-1.1
3,971,345	-		DDA3937_RS17455	0.59	-0.2
3,971,384	+		DDA3937_RS17455	0.62	-0.6
3,971,453	+		DDA3937_RS17455	0.69	-1.0
3,971,454	-		DDA3937_RS17455	0.69	+1.2
3,971,454	-		DDA3937_RS17455	0.69	-0.6
3,971,600	+		DDA3937_RS17455	0.83	+0.2
3,971,601	-		DDA3937_RS17455	0.83	-1.6
3,971,625	+		DDA3937_RS17455	0.85	+0.1
3,971,625	+		DDA3937_RS17455	0.85	-0.6
3,971,626	-		DDA3937_RS17455	0.85	+0.3
3,971,626	-		DDA3937_RS17455	0.85	+0.4
3,971,626	-		DDA3937_RS17455	0.85	-0.8
3,971,626	-		DDA3937_RS17455	0.85	-1.6
3,971,668	-		DDA3937_RS17455	0.89	-0.5
3,971,752	+				+0.7
3,971,782	+				-0.8
3,971,782	+				-1.4
3,971,782	+				-0.9
3,971,782	+				-1.8
3,971,783	-				-1.5
3,971,783	-				-0.6
3,971,783	-				-1.8
3,971,783	-				-1.1
3,971,791	+				-1.6
3,971,791	+				+0.2
3,971,792	-				-0.0
3,971,792	-				-1.7
3,971,792	-				-0.0
3,971,792	-				-0.2
3,971,792	-				+0.1
3,971,792	-				+1.5
3,971,792	-				+1.7
3,971,792	-				-0.0
3,971,806	+				-0.6
3,971,806	+				-0.4
3,971,806	+				-1.4
3,971,806	+				+1.2
3,971,806	+				+0.4
3,971,807	-				-2.6
3,971,846	+				-1.1
3,971,847	-				-1.1
3,971,850	+				-1.3
3,971,851	-				-1.8
3,971,991	+				+0.3
3,971,991	+				+0.5
3,971,991	+				-1.0
3,971,991	+				-1.5
3,971,992	-				-0.4
3,971,992	-				-0.7
3,971,992	-				+1.1
3,972,011	+				+1.2
3,972,011	+				+1.3
3,972,012	-				-1.3
3,972,012	-				-0.5
3,972,012	-				+0.7
3,972,012	-				-2.1
3,972,012	-				-0.8
3,972,012	-				+1.0
3,972,041	+				+0.1
3,972,042	-				-0.0
3,972,056	+				-1.0
3,972,057	-				-1.2
3,972,057	-				+0.5
3,972,181	-		DDA3937_RS17460	0.19	-0.6
3,972,236	+		DDA3937_RS17460	0.27	+0.3
3,972,237	-		DDA3937_RS17460	0.27	-0.2
3,972,270	+		DDA3937_RS17460	0.32	+0.5
3,972,270	+		DDA3937_RS17460	0.32	-0.7
3,972,270	+		DDA3937_RS17460	0.32	+1.2
3,972,271	-		DDA3937_RS17460	0.32	+0.7
3,972,271	-		DDA3937_RS17460	0.32	+0.4
3,972,274	+		DDA3937_RS17460	0.32	+0.0
3,972,274	+		DDA3937_RS17460	0.32	-1.0
3,972,274	+		DDA3937_RS17460	0.32	+0.4
3,972,274	+		DDA3937_RS17460	0.32	-0.3
3,972,274	+		DDA3937_RS17460	0.32	-1.6
3,972,274	+		DDA3937_RS17460	0.32	-0.7
3,972,274	+		DDA3937_RS17460	0.32	-0.6
3,972,274	+		DDA3937_RS17460	0.32	-1.3
3,972,274	+		DDA3937_RS17460	0.32	-1.3
3,972,274	+		DDA3937_RS17460	0.32	+0.1
3,972,274	+		DDA3937_RS17460	0.32	-2.5
3,972,275	-		DDA3937_RS17460	0.32	-2.6
3,972,275	-		DDA3937_RS17460	0.32	+0.4
3,972,275	-		DDA3937_RS17460	0.32	+0.2
3,972,275	-		DDA3937_RS17460	0.32	-0.0
3,972,275	-		DDA3937_RS17460	0.32	+0.8
3,972,275	-		DDA3937_RS17460	0.32	+2.5
3,972,275	-		DDA3937_RS17460	0.32	+1.1
3,972,275	-		DDA3937_RS17460	0.32	-0.1
3,972,276	+		DDA3937_RS17460	0.32	-0.3
3,972,276	+		DDA3937_RS17460	0.32	-0.1
3,972,327	+		DDA3937_RS17460	0.40	-0.7
3,972,415	-		DDA3937_RS17460	0.52	-0.9
3,972,415	-		DDA3937_RS17460	0.52	+0.9
3,972,418	+		DDA3937_RS17460	0.53	-0.2
3,972,418	+		DDA3937_RS17460	0.53	-0.1
3,972,419	-		DDA3937_RS17460	0.53	+0.3
3,972,419	-		DDA3937_RS17460	0.53	-3.3
3,972,459	-		DDA3937_RS17460	0.58	-1.5
3,972,463	+		DDA3937_RS17460	0.59	-0.0
3,972,463	+		DDA3937_RS17460	0.59	+0.0
3,972,463	+		DDA3937_RS17460	0.59	-0.3
3,972,463	+		DDA3937_RS17460	0.59	-1.6
3,972,464	-		DDA3937_RS17460	0.59	+1.7
3,972,464	-		DDA3937_RS17460	0.59	+0.9
3,972,475	+		DDA3937_RS17460	0.61	+0.0
3,972,475	+		DDA3937_RS17460	0.61	-1.9
3,972,475	+		DDA3937_RS17460	0.61	+1.0
3,972,475	+		DDA3937_RS17460	0.61	+0.8
3,972,475	+		DDA3937_RS17460	0.61	+0.2
3,972,476	-		DDA3937_RS17460	0.61	+1.1
3,972,503	+		DDA3937_RS17460	0.65	+0.1
3,972,541	+		DDA3937_RS17460	0.70	-1.0
3,972,541	+		DDA3937_RS17460	0.70	-1.6
3,972,541	+		DDA3937_RS17460	0.70	+0.2
3,972,542	-		DDA3937_RS17460	0.70	-0.5
3,972,553	+		DDA3937_RS17460	0.72	+1.4
3,972,554	-		DDA3937_RS17460	0.72	-0.8
3,972,582	+		DDA3937_RS17460	0.76	-0.8
3,972,667	-		DDA3937_RS17460	0.88	-0.8
3,972,669	+		DDA3937_RS17460	0.88	-0.5
3,972,713	-				-0.0
3,972,713	-				-0.1
3,972,733	+				+0.7
3,972,733	+				-0.0
3,972,733	+				-0.2
3,972,733	+				-2.1
3,972,733	+				+0.4
3,972,733	+				-1.1
3,972,733	+				+1.9
3,972,733	+				-0.2
3,972,733	+				-1.3
3,972,734	-				-1.6
3,972,734	-				-0.4
3,972,734	-				-0.9
3,972,735	+				-2.0
3,972,735	+				-2.1
3,972,735	+				-0.1
3,972,735	+				-0.9
3,972,736	-				-3.0
3,972,736	-				-0.1
3,972,736	-				-0.8
3,972,769	-				+0.5