Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15175

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,481,560	+		DDA3937_RS15165	0.16	-1.0
3,481,560	+		DDA3937_RS15165	0.16	-0.9
3,481,560	+		DDA3937_RS15165	0.16	+0.3
3,481,560	+		DDA3937_RS15165	0.16	+2.0
3,481,560	+		DDA3937_RS15165	0.16	+0.4
3,481,561	-		DDA3937_RS15165	0.16	-1.2
3,481,561	-		DDA3937_RS15165	0.16	-0.6
3,481,561	-		DDA3937_RS15165	0.16	-0.7
3,481,708	+		DDA3937_RS15165	0.50	-1.7
3,481,708	+		DDA3937_RS15165	0.50	-0.5
3,481,709	-		DDA3937_RS15165	0.50	-0.3
3,481,709	-		DDA3937_RS15165	0.50	-0.2
3,481,709	-		DDA3937_RS15165	0.50	-0.7
3,481,909	+				-1.8
3,481,909	+				+1.0
3,481,910	-				+0.6
3,481,910	-				-0.4
3,481,915	+				+1.0
3,481,915	+				+0.3
3,481,915	+				+0.1
3,481,915	+				+1.3
3,481,916	-				-0.4
3,481,916	-				-0.1
3,481,916	-				-1.6
3,481,916	-				-1.0
3,481,917	+				-1.9
3,481,917	+				-1.0
3,481,917	+				-0.7
3,481,917	+				+0.0
3,481,917	+				-0.1
3,481,917	+				-3.6
3,481,917	+				-1.0
3,481,917	+				+0.3
3,481,917	+				-1.5
3,481,917	+				-0.7
3,481,918	-				+0.1
3,481,918	-				-1.1
3,481,918	-				-1.0
3,481,918	-				-1.2
3,481,918	-				-1.0
3,481,918	-				+1.1
3,481,918	-				-0.3
3,481,918	-				-0.5
3,481,918	-				-0.2
3,481,918	-				+0.3
3,481,918	-				+0.3
3,481,918	-				-0.9
3,481,918	-				+0.9
3,481,918	-				+0.0
3,481,951	-				+0.5
3,481,961	+				-1.4
3,481,961	+				+0.4
3,481,962	-				-1.0
3,481,962	-				-1.0
3,481,998	+				+0.1
3,481,998	+				-0.8
3,481,998	+				-1.7
3,481,998	+				-0.8
3,481,999	-				-0.0
3,482,040	+				+0.6
3,482,216	+		DDA3937_RS15170	0.23	-0.2
3,482,216	+		DDA3937_RS15170	0.23	-0.5
3,482,217	-		DDA3937_RS15170	0.23	+1.2
3,482,438	+		DDA3937_RS15170	0.84	-2.0
3,482,438	+		DDA3937_RS15170	0.84	-0.1
3,482,438	+		DDA3937_RS15170	0.84	-0.0
3,482,438	+		DDA3937_RS15170	0.84	-1.2
3,482,438	+		DDA3937_RS15170	0.84	+1.1
3,482,439	-		DDA3937_RS15170	0.85	-2.7
3,482,439	-		DDA3937_RS15170	0.85	-1.2
3,482,439	-		DDA3937_RS15170	0.85	-0.7
3,482,439	-		DDA3937_RS15170	0.85	-0.4
3,482,439	-		DDA3937_RS15170	0.85	+0.6
3,482,439	-				-0.7
3,482,439	-		DDA3937_RS15170	0.85	-0.6
3,482,439	-		DDA3937_RS15170	0.85	+0.1
3,482,439	-		DDA3937_RS15170	0.85	-0.1
3,482,511	+				-0.1
3,482,511	+				-0.8
3,482,511	+				+0.0
3,482,511	+				+0.5
3,482,511	+				-1.8
3,482,511	+				+0.2
3,482,511	+				-0.4
3,482,511	+				-1.8
3,482,511	+				+0.1
3,482,511	+				-0.7
3,482,511	+				-1.5
3,482,511	+				+0.5
3,482,511	+				-1.8
3,482,511	+				+0.6
3,482,511	+				+0.7
3,482,512	-				-0.7
3,482,512	-				+0.3
3,482,512	-				+0.5
3,482,512	-				-0.2
3,482,512	-				-0.2
3,482,512	-				+0.6
3,482,512	-				-3.0
3,482,512	-				-1.7
3,482,512	-				-0.6
3,482,512	-				-0.9
3,482,515	+				+0.9
3,482,515	+				+1.3
3,482,515	+				+0.3
3,482,516	-				-0.1
3,482,516	-				+0.1
3,482,516	-				+0.3
3,482,516	-				+0.1
3,482,516	-				-0.3
3,482,516	-				-1.4
3,482,516	-				-0.4
3,482,516	-				+1.3
3,482,547	-				-1.9
3,482,573	+		DDA3937_RS15175	0.11	-0.1
3,482,573	+		DDA3937_RS15175	0.11	+0.3
3,482,609	+		DDA3937_RS15175	0.18	+1.1
3,482,609	+		DDA3937_RS15175	0.18	-0.4
3,482,610	-		DDA3937_RS15175	0.18	-1.1
3,482,661	-		DDA3937_RS15175	0.27	-0.8
3,482,731	+		DDA3937_RS15175	0.41	-1.3
3,482,732	-		DDA3937_RS15175	0.41	+1.5
3,482,751	+		DDA3937_RS15175	0.45	-1.1
3,482,751	+				+1.3
3,482,751	+		DDA3937_RS15175	0.45	-1.3
3,482,751	+		DDA3937_RS15175	0.45	-2.7
3,482,752	-		DDA3937_RS15175	0.45	+0.8
3,482,752	-		DDA3937_RS15175	0.45	+0.2
3,482,752	-		DDA3937_RS15175	0.45	+0.1
3,482,807	-		DDA3937_RS15175	0.55	-0.4
3,482,857	+		DDA3937_RS15175	0.65	+0.8
3,482,858	-		DDA3937_RS15175	0.65	-0.5
3,482,922	-		DDA3937_RS15175	0.77	-0.8
3,482,975	+		DDA3937_RS15175	0.87	-0.2
3,482,976	-		DDA3937_RS15175	0.87	-1.0
3,483,017	+				+0.1
3,483,018	-				+0.2
3,483,018	-				+0.5
3,483,078	+				-2.2
3,483,078	+				-0.4
3,483,078	+				+0.5
3,483,079	-				-0.1
3,483,079	-				-2.1
3,483,119	+				-0.4
3,483,138	+				-0.5
3,483,191	-				+0.3
3,483,191	-				-0.5
3,483,394	-				-0.9
3,483,457	-				+0.3
3,483,464	+				-0.7
3,483,464	+				-1.0
3,483,465	-				-1.2
3,483,474	-				-1.5
3,483,477	+				-0.1
3,483,477	+				+3.7
3,483,478	-				-0.2
3,483,523	+				-0.5
3,483,523	+				-1.0
3,483,524	-				-0.7
3,483,526	-				-1.0
3,483,538	-				+0.0
3,483,538	-				+1.1
3,483,538	-				+1.6
3,483,540	+				-0.2
3,483,540	+				+1.3
3,483,541	-				-2.2
3,483,541	-				-2.1
3,483,584	+				-0.5
3,483,584	+				+0.4
3,483,584	+				+0.7
3,483,591	+				-0.7
3,483,591	+				-1.1
3,483,592	-		DDA3937_RS15185	0.10	-0.2
3,483,592	-		DDA3937_RS15185	0.10	-1.2
3,483,592	-		DDA3937_RS15185	0.10	+2.0
3,483,594	+		DDA3937_RS15185	0.10	-0.2
3,483,594	+		DDA3937_RS15185	0.10	+0.0
3,483,594	+		DDA3937_RS15185	0.10	-2.5
3,483,595	-		DDA3937_RS15185	0.10	-2.4
3,483,598	+		DDA3937_RS15185	0.11	-1.0
3,483,598	+		DDA3937_RS15185	0.11	+0.0
3,483,598	+		DDA3937_RS15185	0.11	-0.5
3,483,598	+		DDA3937_RS15185	0.11	+0.0
3,483,598	+		DDA3937_RS15185	0.11	+0.8
3,483,599	-		DDA3937_RS15185	0.11	+0.6
3,483,648	+		DDA3937_RS15185	0.18	+0.1
3,483,648	+		DDA3937_RS15185	0.18	+0.5
3,483,724	+		DDA3937_RS15185	0.30	-0.6
3,483,725	-		DDA3937_RS15185	0.30	-2.7
3,483,787	+		DDA3937_RS15185	0.40	+0.1
3,483,788	-		DDA3937_RS15185	0.40	-0.3
3,483,788	-		DDA3937_RS15185	0.40	-3.0
3,483,789	+		DDA3937_RS15185	0.40	+1.5
3,483,789	+		DDA3937_RS15185	0.40	+1.6
3,483,790	-		DDA3937_RS15185	0.40	+0.3
3,483,840	+		DDA3937_RS15185	0.48	+0.1
3,483,840	+		DDA3937_RS15185	0.48	+1.3
3,483,840	+		DDA3937_RS15185	0.48	+1.3
3,483,840	+		DDA3937_RS15185	0.48	-1.0
3,483,893	-		DDA3937_RS15185	0.56	-0.6