Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14975

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,435,036	+		DDA3937_RS14970	0.43	+0.5
3,435,054	-		DDA3937_RS14970	0.44	+2.3
3,435,097	+		DDA3937_RS14970	0.49	+0.1
3,435,148	+		DDA3937_RS14970	0.54	-0.1
3,435,149	-		DDA3937_RS14970	0.54	-1.7
3,435,263	+		DDA3937_RS14970	0.65	-0.5
3,435,264	-		DDA3937_RS14970	0.65	+0.0
3,435,333	+		DDA3937_RS14970	0.72	+0.0
3,435,414	+		DDA3937_RS14970	0.80	+3.5
3,435,432	+		DDA3937_RS14970	0.81	-0.8
3,435,433	-		DDA3937_RS14970	0.82	-1.0
3,435,433	-		DDA3937_RS14970	0.82	+0.5
3,435,535	+				-0.0
3,435,561	+				-0.4
3,435,562	-				+0.2
3,435,599	+				+4.5
3,435,600	-				+0.5
3,435,619	+				-1.4
3,435,619	+				-0.5
3,435,619	+				+0.3
3,435,620	-				-0.8
3,435,620	-				+0.5
3,435,624	-				+0.9
3,435,697	+				+0.1
3,435,753	+				+1.3
3,435,753	+				-1.5
3,435,754	-				-0.5
3,435,772	-				-0.1
3,435,772	-				-0.2
3,435,782	+				-0.1
3,435,783	-				+0.0
3,435,783	-				+0.9
3,435,783	-				-2.1
3,435,784	+				+0.3
3,435,786	+				-1.1
3,435,787	-				+1.0
3,435,915	-				+0.7
3,435,915	-				+0.3
3,435,969	+				-0.1
3,435,969	+				+0.3
3,435,969	+				+7.4
3,435,970	-				+0.5
3,435,976	-				-1.8
3,436,023	+				+0.5
3,436,024	-				+0.0
3,436,025	+				-1.9
3,436,026	-				+0.2
3,436,026	-				+0.4
3,436,035	+				+1.0
3,436,035	+				-1.5
3,436,035	+				+0.9
3,436,078	-				+2.2
3,436,233	+		DDA3937_RS14975	0.14	-0.8
3,436,233	+		DDA3937_RS14975	0.14	+0.2
3,436,233	+		DDA3937_RS14975	0.14	+0.2
3,436,233	+		DDA3937_RS14975	0.14	-0.4
3,436,233	+		DDA3937_RS14975	0.14	-1.2
3,436,234	-		DDA3937_RS14975	0.14	+0.1
3,436,237	+		DDA3937_RS14975	0.15	-0.0
3,436,238	-		DDA3937_RS14975	0.15	+1.1
3,436,238	-		DDA3937_RS14975	0.15	+0.2
3,436,249	+		DDA3937_RS14975	0.15	+0.3
3,436,249	+		DDA3937_RS14975	0.15	-0.6
3,436,250	-		DDA3937_RS14975	0.15	-0.5
3,436,250	-		DDA3937_RS14975	0.15	+1.4
3,436,250	-		DDA3937_RS14975	0.15	+3.8
3,436,250	-		DDA3937_RS14975	0.15	-0.5
3,436,250	-		DDA3937_RS14975	0.15	-0.0
3,436,261	-		DDA3937_RS14975	0.16	-2.0
3,436,324	-		DDA3937_RS14975	0.21	-3.0
3,436,324	-		DDA3937_RS14975	0.21	+1.0
3,436,324	-		DDA3937_RS14975	0.21	+1.3
3,436,324	-		DDA3937_RS14975	0.21	-0.4
3,436,326	+		DDA3937_RS14975	0.21	+0.6
3,436,326	+		DDA3937_RS14975	0.21	+0.8
3,436,350	+				+0.3
3,436,350	+		DDA3937_RS14975	0.23	-0.2
3,436,351	-		DDA3937_RS14975	0.23	+0.1
3,436,351	-		DDA3937_RS14975	0.23	-1.2
3,436,378	+		DDA3937_RS14975	0.24	+0.1
3,436,379	-		DDA3937_RS14975	0.25	-0.2
3,436,379	-		DDA3937_RS14975	0.25	-0.1
3,436,379	-		DDA3937_RS14975	0.25	+0.2
3,436,486	+		DDA3937_RS14975	0.32	-0.4
3,436,513	-		DDA3937_RS14975	0.34	-0.8
3,436,607	+		DDA3937_RS14975	0.41	+1.5
3,436,607	+		DDA3937_RS14975	0.41	-1.7
3,436,608	-		DDA3937_RS14975	0.41	+0.5
3,436,608	-		DDA3937_RS14975	0.41	-0.8
3,436,610	+		DDA3937_RS14975	0.41	+2.1
3,436,678	-		DDA3937_RS14975	0.46	+1.4
3,436,678	-		DDA3937_RS14975	0.46	+0.4
3,436,678	-		DDA3937_RS14975	0.46	-0.7
3,436,874	-		DDA3937_RS14975	0.59	+2.1
3,436,964	+		DDA3937_RS14975	0.66	-0.7
3,437,004	+		DDA3937_RS14975	0.68	-0.1
3,437,005	-		DDA3937_RS14975	0.69	+0.8
3,437,008	-		DDA3937_RS14975	0.69	-1.1
3,437,100	+		DDA3937_RS14975	0.75	+1.3
3,437,100	+		DDA3937_RS14975	0.75	-1.8
3,437,112	+		DDA3937_RS14975	0.76	+0.0
3,437,112	+		DDA3937_RS14975	0.76	-0.2
3,437,112	+		DDA3937_RS14975	0.76	+0.3
3,437,115	+		DDA3937_RS14975	0.76	+1.2
3,437,188	-		DDA3937_RS14975	0.81	-1.8
3,437,250	-		DDA3937_RS14975	0.86	-0.1
3,437,250	-		DDA3937_RS14975	0.86	+1.2
3,437,256	+		DDA3937_RS14975	0.86	+0.2
3,437,256	+		DDA3937_RS14975	0.86	+1.3
3,437,265	+				-0.7
3,437,269	-		DDA3937_RS14975	0.87	+0.0
3,437,311	+				-1.5
3,437,311	+				-1.2
3,437,311	+				+0.3
3,437,311	+				-0.3
3,437,311	+				-1.3
3,437,312	-				-1.5
3,437,312	-				-0.1
3,437,437	+				-2.1
3,437,437	+				+0.0
3,437,438	-				-2.7
3,437,438	-				+0.2
3,437,438	-				-0.6
3,437,438	-				-2.1
3,437,512	+				-0.1
3,437,588	-				-0.7
3,437,588	-				-0.9
3,437,629	+		DDA3937_RS14980	0.12	-2.6
3,437,629	+		DDA3937_RS14980	0.12	-0.4
3,437,640	+		DDA3937_RS14980	0.13	-1.2
3,437,854	+		DDA3937_RS14980	0.27	-0.2
3,437,883	-		DDA3937_RS14980	0.29	-0.6
3,438,018	+		DDA3937_RS14980	0.38	-0.3
3,438,171	-		DDA3937_RS14980	0.49	+4.0
3,438,339	+		DDA3937_RS14980	0.60	+1.0
3,438,339	+		DDA3937_RS14980	0.60	+0.1
3,438,339	+		DDA3937_RS14980	0.60	+0.5
3,438,340	-		DDA3937_RS14980	0.60	-2.2
3,438,340	-		DDA3937_RS14980	0.60	+0.4
3,438,370	+		DDA3937_RS14980	0.62	-0.2
3,438,370	+		DDA3937_RS14980	0.62	-0.3
3,438,371	-		DDA3937_RS14980	0.62	+1.7
3,438,371	-		DDA3937_RS14980	0.62	-2.5
3,438,371	-		DDA3937_RS14980	0.62	-0.4
3,438,392	-		DDA3937_RS14980	0.64	+0.2
3,438,393	+		DDA3937_RS14980	0.64	+0.7
3,438,393	+		DDA3937_RS14980	0.64	+0.9
3,438,393	+		DDA3937_RS14980	0.64	-2.4
3,438,400	-		DDA3937_RS14980	0.64	-0.7
3,438,411	+		DDA3937_RS14980	0.65	-0.3
3,438,411	+		DDA3937_RS14980	0.65	+0.7
3,438,411	+		DDA3937_RS14980	0.65	+0.9
3,438,411	+		DDA3937_RS14980	0.65	+0.8
3,438,411	+		DDA3937_RS14980	0.65	+0.3
3,438,412	-		DDA3937_RS14980	0.65	-0.2
3,438,412	-		DDA3937_RS14980	0.65	+0.2
3,438,412	-		DDA3937_RS14980	0.65	+1.7
3,438,412	-		DDA3937_RS14980	0.65	-0.2
3,438,412	-		DDA3937_RS14980	0.65	+0.2