Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14005

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,197,508	-		DDA3937_RS14000	0.29	-0.4
3,197,508	-		DDA3937_RS14000	0.29	+1.4
3,197,514	+		DDA3937_RS14000	0.30	-1.6
3,197,545	+		DDA3937_RS14000	0.32	+0.3
3,197,586	+		DDA3937_RS14000	0.35	+0.2
3,197,618	+		DDA3937_RS14000	0.37	+0.2
3,197,618	+		DDA3937_RS14000	0.37	-0.9
3,197,630	+		DDA3937_RS14000	0.38	+4.2
3,197,640	+		DDA3937_RS14000	0.39	-0.3
3,197,641	-		DDA3937_RS14000	0.39	-2.0
3,197,675	+		DDA3937_RS14000	0.41	-1.8
3,197,700	+		DDA3937_RS14000	0.43	+1.6
3,197,701	-		DDA3937_RS14000	0.43	-1.7
3,197,844	-		DDA3937_RS14000	0.53	+0.2
3,197,851	-		DDA3937_RS14000	0.54	+0.4
3,197,874	+		DDA3937_RS14000	0.55	+0.2
3,197,878	-		DDA3937_RS14000	0.56	-0.2
3,198,026	+		DDA3937_RS14000	0.66	-1.8
3,198,028	+		DDA3937_RS14000	0.66	-1.1
3,198,028	+		DDA3937_RS14000	0.66	-0.4
3,198,029	-		DDA3937_RS14000	0.67	+1.2
3,198,055	+		DDA3937_RS14000	0.68	+0.7
3,198,056	-		DDA3937_RS14000	0.68	-0.0
3,198,079	+		DDA3937_RS14000	0.70	-1.8
3,198,080	-		DDA3937_RS14000	0.70	-0.4
3,198,080	-		DDA3937_RS14000	0.70	-2.6
3,198,084	+		DDA3937_RS14000	0.70	-0.6
3,198,085	-		DDA3937_RS14000	0.71	-2.1
3,198,085	-		DDA3937_RS14000	0.71	+0.2
3,198,085	-		DDA3937_RS14000	0.71	+1.5
3,198,085	-		DDA3937_RS14000	0.71	+0.9
3,198,086	+		DDA3937_RS14000	0.71	-1.0
3,198,086	+		DDA3937_RS14000	0.71	+0.2
3,198,086	+		DDA3937_RS14000	0.71	-0.1
3,198,087	-		DDA3937_RS14000	0.71	-1.4
3,198,108	+				+1.5
3,198,191	+				+0.2
3,198,192	-		DDA3937_RS14000	0.78	-0.5
3,198,192	-		DDA3937_RS14000	0.78	-0.1
3,198,192	-		DDA3937_RS14000	0.78	+1.2
3,198,192	-		DDA3937_RS14000	0.78	+0.6
3,198,195	+		DDA3937_RS14000	0.78	+0.8
3,198,195	+		DDA3937_RS14000	0.78	+0.5
3,198,196	-		DDA3937_RS14000	0.78	-1.1
3,198,196	-		DDA3937_RS14000	0.78	+0.5
3,198,196	-		DDA3937_RS14000	0.78	+0.9
3,198,196	-				-0.8
3,198,196	-		DDA3937_RS14000	0.78	+0.1
3,198,201	+		DDA3937_RS14000	0.79	-2.6
3,198,201	+		DDA3937_RS14000	0.79	-0.8
3,198,201	+		DDA3937_RS14000	0.79	-1.1
3,198,202	-		DDA3937_RS14000	0.79	-0.1
3,198,378	+				-1.2
3,198,379	-				+0.9
3,198,397	+				-2.6
3,198,449	-				-0.1
3,198,477	+				-1.1
3,198,477	+				+1.1
3,198,477	+				-1.0
3,198,477	+				+0.8
3,198,551	+		DDA3937_RS14005	0.21	+0.5
3,198,551	+		DDA3937_RS14005	0.21	-1.8
3,198,551	+		DDA3937_RS14005	0.21	-0.2
3,198,551	+		DDA3937_RS14005	0.21	+0.4
3,198,551	+		DDA3937_RS14005	0.21	-0.4
3,198,551	+		DDA3937_RS14005	0.21	-0.1
3,198,551	+		DDA3937_RS14005	0.21	+0.9
3,198,551	+		DDA3937_RS14005	0.21	+6.0
3,198,552	-		DDA3937_RS14005	0.22	-0.2
3,198,552	-		DDA3937_RS14005	0.22	+0.7
3,198,552	-		DDA3937_RS14005	0.22	-0.5
3,198,589	+		DDA3937_RS14005	0.35	-0.2
3,198,590	-		DDA3937_RS14005	0.36	-1.4
3,198,691	+		DDA3937_RS14005	0.72	-0.6
3,198,691	+		DDA3937_RS14005	0.72	+0.7
3,198,692	-		DDA3937_RS14005	0.72	+0.9
3,198,706	+		DDA3937_RS14005	0.78	-0.4
3,198,714	-		DDA3937_RS14005	0.80	+1.2
3,198,813	-				-3.1
3,198,844	+				+1.2
3,198,853	+				+0.3
3,198,858	+				-0.9
3,198,858	+				-0.4
3,198,860	+				-0.3
3,198,946	+				+3.4
3,198,950	-				-0.4
3,198,993	+				+0.5
3,198,993	+				-0.2
3,198,993	+				-1.3
3,198,993	+				+0.0
3,198,993	+				-0.4
3,198,993	+				+1.2
3,198,993	+				-1.1
3,198,993	+				+1.6
3,198,993	+				-0.5
3,198,993	+				-0.0
3,198,993	+				-0.4
3,198,994	-				+0.3
3,198,994	-				+1.2
3,198,994	-				-0.3
3,198,994	-				-1.1
3,198,994	-				+1.1
3,198,997	+				+0.9
3,198,998	-				-1.2
3,199,037	+				-0.2
3,199,037	+				-0.4
3,199,084	+				-0.7
3,199,104	+				-0.0
3,199,104	+				+4.1
3,199,105	-				+1.4
3,199,105	-				-0.8
3,199,105	-				+1.7
3,199,105	-				-0.1
3,199,105	-				+0.5
3,199,138	+				+0.2
3,199,149	+				+1.8
3,199,179	-				-0.8
3,199,185	-				-1.1
3,199,196	+				-0.0
3,199,196	+				-0.8
3,199,197	-				-0.8
3,199,206	+				-0.4
3,199,206	+				-0.2
3,199,206	+				+1.2
3,199,207	-				+0.2
3,199,207	-				-0.4
3,199,207	-				-1.2
3,199,207	-				+2.5
3,199,207	-				+0.1
3,199,207	-				+1.0
3,199,210	+				-0.2
3,199,210	+				+0.5
3,199,210	+				-1.6
3,199,210	+				-0.5
3,199,210	+				-1.2
3,199,211	-				-1.6
3,199,211	-				-0.4
3,199,211	-				+2.8
3,199,211	-				+0.1
3,199,211	-				-1.6
3,199,211	-				-0.9
3,199,212	+				-0.7
3,199,212	+				+0.1
3,199,212	+				-0.2
3,199,212	+				+0.7
3,199,212	+				+1.0
3,199,212	+				-0.8
3,199,212	+				+0.5
3,199,212	+				+1.2
3,199,212	+				-1.3
3,199,213	-				+0.6
3,199,213	-				-1.4
3,199,213	-				-1.4
3,199,213	-				+0.8
3,199,213	-				+0.2
3,199,216	+				+0.3
3,199,216	+				+0.4
3,199,216	+				-2.3
3,199,216	+				-0.1
3,199,217	-				-0.5
3,199,217	-				-0.6
3,199,248	+				+0.6
3,199,248	+				-0.4
3,199,248	+				+1.0
3,199,248	+				-0.8
3,199,249	-				+0.7
3,199,249	-				-0.0
3,199,249	-				+0.6
3,199,249	-				-0.1
3,199,249	-				+0.8
3,199,249	-				-0.6
3,199,249	-				-0.2
3,199,258	+				+3.2
3,199,289	+				-1.1
3,199,290	-				+0.6
3,199,293	+				-0.8
3,199,293	+				+0.2
3,199,294	-				+2.4
3,199,294	-				-1.1
3,199,311	+		DDA3937_RS14010	0.11	+0.2
3,199,315	-		DDA3937_RS14010	0.11	-0.2
3,199,315	-		DDA3937_RS14010	0.11	-0.6
3,199,394	+		DDA3937_RS14010	0.27	-0.8
3,199,394	+		DDA3937_RS14010	0.27	-0.2
3,199,395	-		DDA3937_RS14010	0.27	+0.3
3,199,395	-		DDA3937_RS14010	0.27	-0.4
3,199,395	-		DDA3937_RS14010	0.27	-3.0
3,199,395	-		DDA3937_RS14010	0.27	-0.8
3,199,402	-		DDA3937_RS14010	0.29	-0.1
3,199,431	+		DDA3937_RS14010	0.34	-2.2
3,199,432	-		DDA3937_RS14010	0.35	-0.4
3,199,451	+		DDA3937_RS14010	0.38	+2.3
3,199,451	+		DDA3937_RS14010	0.38	+1.2
3,199,451	+		DDA3937_RS14010	0.38	-0.0
3,199,451	+		DDA3937_RS14010	0.38	-0.5
3,199,451	+		DDA3937_RS14010	0.38	-1.2
3,199,452	-		DDA3937_RS14010	0.38	-0.8
3,199,452	-		DDA3937_RS14010	0.38	-2.4
3,199,452	-		DDA3937_RS14010	0.38	+0.6
3,199,455	+		DDA3937_RS14010	0.39	+2.6
3,199,455	+		DDA3937_RS14010	0.39	-1.1
3,199,455	+		DDA3937_RS14010	0.39	+0.9
3,199,456	-		DDA3937_RS14010	0.39	+0.1
3,199,456	-		DDA3937_RS14010	0.39	-0.4
3,199,458	-		DDA3937_RS14010	0.40	-0.9
3,199,458	-		DDA3937_RS14010	0.40	+2.1
3,199,488	+		DDA3937_RS14010	0.46	-0.4
3,199,488	+		DDA3937_RS14010	0.46	+0.1
3,199,488	+		DDA3937_RS14010	0.46	-0.8
3,199,489	-		DDA3937_RS14010	0.46	-2.7
3,199,489	-		DDA3937_RS14010	0.46	+0.7
3,199,489	-		DDA3937_RS14010	0.46	-1.7
3,199,489	-		DDA3937_RS14010	0.46	-0.5
3,199,514	+		DDA3937_RS14010	0.51	-1.2
3,199,515	-		DDA3937_RS14010	0.51	-1.1
3,199,515	-		DDA3937_RS14010	0.51	-0.7
3,199,515	-		DDA3937_RS14010	0.51	+1.5
3,199,515	-		DDA3937_RS14010	0.51	+0.4
3,199,534	+		DDA3937_RS14010	0.55	-1.0
3,199,535	-		DDA3937_RS14010	0.55	+0.8
3,199,554	+		DDA3937_RS14010	0.59	+0.8
3,199,554	+		DDA3937_RS14010	0.59	+0.0
3,199,555	-		DDA3937_RS14010	0.59	+0.0
3,199,595	+		DDA3937_RS14010	0.67	+1.2
3,199,595	+		DDA3937_RS14010	0.67	-1.8
3,199,595	+		DDA3937_RS14010	0.67	-0.5
3,199,595	+		DDA3937_RS14010	0.67	-1.0
3,199,595	+		DDA3937_RS14010	0.67	+1.1
3,199,596	-		DDA3937_RS14010	0.67	+1.0
3,199,596	-		DDA3937_RS14010	0.67	-0.5
3,199,596	-		DDA3937_RS14010	0.67	-0.3
3,199,597	+		DDA3937_RS14010	0.67	-0.1
3,199,598	-		DDA3937_RS14010	0.67	-1.1
3,199,598	-		DDA3937_RS14010	0.67	+0.4
3,199,619	+		DDA3937_RS14010	0.71	+3.9
3,199,619	+		DDA3937_RS14010	0.71	-1.3
3,199,620	-		DDA3937_RS14010	0.72	-0.4
3,199,620	-		DDA3937_RS14010	0.72	+0.2
3,199,629	+		DDA3937_RS14010	0.73	-0.5
3,199,647	+		DDA3937_RS14010	0.77	-0.6
3,199,648	-		DDA3937_RS14010	0.77	+0.2
3,199,648	-		DDA3937_RS14010	0.77	-1.0
3,199,685	+		DDA3937_RS14010	0.84	-0.8
3,199,685	+		DDA3937_RS14010	0.84	+2.0
3,199,686	-		DDA3937_RS14010	0.85	+1.4
3,199,686	-		DDA3937_RS14010	0.85	-0.9
3,199,686	-		DDA3937_RS14010	0.85	+0.6
3,199,686	-		DDA3937_RS14010	0.85	+0.1
3,199,686	-		DDA3937_RS14010	0.85	-1.1
3,199,695	-		DDA3937_RS14010	0.86	-0.3
3,199,718	+				-1.5
3,199,718	+				-0.4
3,199,718	+				-1.9
3,199,718	+				-2.6
3,199,719	-				+0.8
3,199,719	-				-0.2
3,199,719	-				+0.0
3,199,742	-				+0.8
3,199,757	+				-0.4
3,199,763	+				-0.6
3,199,763	+				-1.4
3,199,764	-				+0.0
3,199,764	-				-1.2