Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11590

Experiment: Norland

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS11585 and DDA3937_RS11590 overlap by 8 nucleotidesDDA3937_RS11590 and DDA3937_RS11595 overlap by 14 nucleotidesDDA3937_RS11595 and DDA3937_RS11600 are separated by 217 nucleotides DDA3937_RS11585: DDA3937_RS11585 - type III secretion system outer membrane ring subunit SctC, at 2,636,198 to 2,638,267 _RS11585 DDA3937_RS11590: DDA3937_RS11590 - hypothetical protein, at 2,638,260 to 2,638,694 _RS11590 DDA3937_RS11595: DDA3937_RS11595 - type III secretion protein HrpF, at 2,638,681 to 2,638,908 _RS11595 DDA3937_RS11600: DDA3937_RS11600 - hypothetical protein, at 2,639,126 to 2,640,175 _RS11600 Position (kb) 2638 2639Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2637.416 kb on - strand, within DDA3937_RS11585at 2637.780 kb on + strand, within DDA3937_RS11585at 2637.780 kb on + strand, within DDA3937_RS11585at 2637.780 kb on + strand, within DDA3937_RS11585at 2637.781 kb on - strand, within DDA3937_RS11585at 2637.945 kb on + strand, within DDA3937_RS11585at 2637.946 kb on - strand, within DDA3937_RS11585at 2637.946 kb on - strand, within DDA3937_RS11585at 2638.045 kb on + strand, within DDA3937_RS11585at 2638.137 kb on + strandat 2638.138 kb on - strandat 2638.138 kb on - strandat 2638.144 kb on - strandat 2638.244 kb on + strandat 2638.244 kb on + strandat 2638.245 kb on - strandat 2638.245 kb on - strandat 2638.251 kb on + strandat 2638.251 kb on + strandat 2638.251 kb on + strandat 2638.251 kb on + strandat 2638.251 kb on + strandat 2638.251 kb on + strandat 2638.252 kb on - strandat 2638.252 kb on - strandat 2638.252 kb on - strandat 2638.252 kb on - strandat 2638.432 kb on - strand, within DDA3937_RS11590at 2638.437 kb on + strand, within DDA3937_RS11590at 2638.437 kb on + strand, within DDA3937_RS11590at 2638.438 kb on - strand, within DDA3937_RS11590at 2638.438 kb on - strand, within DDA3937_RS11590at 2638.438 kb on - strand, within DDA3937_RS11590at 2638.622 kb on + strand, within DDA3937_RS11590at 2638.622 kb on + strand, within DDA3937_RS11590at 2638.763 kb on + strand, within DDA3937_RS11595at 2638.763 kb on + strand, within DDA3937_RS11595at 2638.764 kb on - strand, within DDA3937_RS11595at 2638.764 kb on - strand, within DDA3937_RS11595at 2638.781 kb on + strand, within DDA3937_RS11595at 2638.781 kb on + strand, within DDA3937_RS11595at 2638.782 kb on - strand, within DDA3937_RS11595at 2638.790 kb on + strand, within DDA3937_RS11595at 2638.790 kb on + strand, within DDA3937_RS11595at 2638.790 kb on + strand, within DDA3937_RS11595at 2638.790 kb on + strand, within DDA3937_RS11595at 2638.790 kb on + strand, within DDA3937_RS11595at 2638.790 kb on + strand, within DDA3937_RS11595at 2638.791 kb on - strand, within DDA3937_RS11595at 2638.791 kb on - strand, within DDA3937_RS11595at 2638.794 kb on + strand, within DDA3937_RS11595at 2638.890 kb on + strandat 2638.890 kb on + strandat 2638.912 kb on + strandat 2638.912 kb on + strandat 2638.912 kb on + strandat 2638.912 kb on + strandat 2638.912 kb on + strandat 2638.912 kb on + strandat 2638.912 kb on + strandat 2638.912 kb on + strandat 2638.912 kb on + strandat 2638.912 kb on + strandat 2638.912 kb on + strandat 2638.912 kb on + strandat 2638.913 kb on - strandat 2638.913 kb on - strandat 2638.916 kb on + strandat 2638.917 kb on - strandat 2638.917 kb on - strandat 2638.917 kb on - strandat 2638.937 kb on + strandat 2638.937 kb on + strandat 2638.938 kb on - strandat 2638.938 kb on - strandat 2638.938 kb on - strandat 2638.938 kb on - strandat 2638.938 kb on - strandat 2638.954 kb on + strandat 2638.954 kb on + strandat 2638.954 kb on + strandat 2638.955 kb on - strandat 2638.955 kb on - strandat 2638.955 kb on - strandat 2638.955 kb on - strandat 2638.955 kb on - strandat 2639.049 kb on + strandat 2639.049 kb on + strandat 2639.050 kb on - strandat 2639.050 kb on - strandat 2639.050 kb on - strandat 2639.050 kb on - strandat 2639.059 kb on + strandat 2639.063 kb on + strandat 2639.064 kb on - strandat 2639.081 kb on + strandat 2639.081 kb on + strandat 2639.081 kb on + strandat 2639.082 kb on - strandat 2639.111 kb on + strandat 2639.140 kb on + strandat 2639.141 kb on - strandat 2639.141 kb on - strandat 2639.145 kb on + strandat 2639.146 kb on - strandat 2639.158 kb on - strandat 2639.244 kb on + strand, within DDA3937_RS11600at 2639.245 kb on - strand, within DDA3937_RS11600at 2639.595 kb on + strand, within DDA3937_RS11600at 2639.595 kb on + strand, within DDA3937_RS11600at 2639.596 kb on - strand, within DDA3937_RS11600at 2639.596 kb on - strand, within DDA3937_RS11600at 2639.596 kb on - strand, within DDA3937_RS11600at 2639.671 kb on + strand, within DDA3937_RS11600at 2639.672 kb on - strand, within DDA3937_RS11600at 2639.672 kb on - strand, within DDA3937_RS11600at 2639.689 kb on + strand, within DDA3937_RS11600at 2639.690 kb on - strand, within DDA3937_RS11600

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Norland
remove
2,637,416 - DDA3937_RS11585 0.59 -2.2
2,637,780 + DDA3937_RS11585 0.76 -0.0
2,637,780 + DDA3937_RS11585 0.76 -0.3
2,637,780 + DDA3937_RS11585 0.76 +0.0
2,637,781 - DDA3937_RS11585 0.76 -0.0
2,637,945 + DDA3937_RS11585 0.84 +3.0
2,637,946 - DDA3937_RS11585 0.84 -1.1
2,637,946 - DDA3937_RS11585 0.84 -1.3
2,638,045 + DDA3937_RS11585 0.89 -0.5
2,638,137 + +1.7
2,638,138 - -0.7
2,638,138 - +0.1
2,638,144 - +1.0
2,638,244 + -0.4
2,638,244 + -1.6
2,638,245 - -1.0
2,638,245 - +1.0
2,638,251 + -0.7
2,638,251 + +1.0
2,638,251 + -0.6
2,638,251 + +1.0
2,638,251 + +0.8
2,638,251 + -2.4
2,638,252 - -1.2
2,638,252 - +0.2
2,638,252 - +0.1
2,638,252 - -2.4
2,638,432 - DDA3937_RS11590 0.40 -1.3
2,638,437 + DDA3937_RS11590 0.41 -0.4
2,638,437 + DDA3937_RS11590 0.41 -0.5
2,638,438 - DDA3937_RS11590 0.41 -1.5
2,638,438 - DDA3937_RS11590 0.41 -2.7
2,638,438 - DDA3937_RS11590 0.41 -2.0
2,638,622 + DDA3937_RS11590 0.83 -0.6
2,638,622 + DDA3937_RS11590 0.83 -2.0
2,638,763 + DDA3937_RS11595 0.36 -0.9
2,638,763 + DDA3937_RS11595 0.36 +1.0
2,638,764 - DDA3937_RS11595 0.36 -1.0
2,638,764 - DDA3937_RS11595 0.36 -1.0
2,638,781 + DDA3937_RS11595 0.44 -1.1
2,638,781 + DDA3937_RS11595 0.44 +0.3
2,638,782 - DDA3937_RS11595 0.44 +1.4
2,638,790 + DDA3937_RS11595 0.48 -0.6
2,638,790 + DDA3937_RS11595 0.48 -0.4
2,638,790 + DDA3937_RS11595 0.48 +1.4
2,638,790 + DDA3937_RS11595 0.48 -0.1
2,638,790 + DDA3937_RS11595 0.48 -2.7
2,638,790 + DDA3937_RS11595 0.48 -0.6
2,638,791 - DDA3937_RS11595 0.48 -0.4
2,638,791 - DDA3937_RS11595 0.48 -1.2
2,638,794 + DDA3937_RS11595 0.50 +0.0
2,638,890 + +0.0
2,638,890 + -1.6
2,638,912 + -1.6
2,638,912 + -0.4
2,638,912 + -0.5
2,638,912 + -2.3
2,638,912 + -0.7
2,638,912 + -0.9
2,638,912 + +1.1
2,638,912 + -1.2
2,638,912 + -1.4
2,638,912 + -0.2
2,638,912 + -0.3
2,638,912 + -0.6
2,638,913 - +0.3
2,638,913 - -1.0
2,638,916 + -1.1
2,638,917 - -0.1
2,638,917 - -0.9
2,638,917 - -1.4
2,638,937 + +1.3
2,638,937 + -1.8
2,638,938 - +0.7
2,638,938 - -0.4
2,638,938 - -1.1
2,638,938 - -1.6
2,638,938 - -1.3
2,638,954 + +2.2
2,638,954 + -0.5
2,638,954 + -0.8
2,638,955 - -0.8
2,638,955 - -0.7
2,638,955 - -0.7
2,638,955 - -3.2
2,638,955 - +0.8
2,639,049 + -0.7
2,639,049 + -0.7
2,639,050 - -0.7
2,639,050 - -0.8
2,639,050 - -1.5
2,639,050 - -1.2
2,639,059 + +1.7
2,639,063 + +0.1
2,639,064 - +1.2
2,639,081 + -0.2
2,639,081 + +0.6
2,639,081 + -1.1
2,639,082 - -2.0
2,639,111 + -0.7
2,639,140 + -3.2
2,639,141 - -0.6
2,639,141 - -0.3
2,639,145 + -1.0
2,639,146 - +0.0
2,639,158 - -1.0
2,639,244 + DDA3937_RS11600 0.11 -0.9
2,639,245 - DDA3937_RS11600 0.11 -1.4
2,639,595 + DDA3937_RS11600 0.45 -0.8
2,639,595 + DDA3937_RS11600 0.45 -1.3
2,639,596 - DDA3937_RS11600 0.45 +0.2
2,639,596 - DDA3937_RS11600 0.45 +0.1
2,639,596 - DDA3937_RS11600 0.45 -1.0
2,639,671 + DDA3937_RS11600 0.52 -1.4
2,639,672 - DDA3937_RS11600 0.52 -0.2
2,639,672 - DDA3937_RS11600 0.52 -0.5
2,639,689 + DDA3937_RS11600 0.54 -1.1
2,639,690 - DDA3937_RS11600 0.54 -0.7

Or see this region's nucleotide sequence