Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS11585 and DDA3937_RS11590 overlap by 8 nucleotides DDA3937_RS11590 and DDA3937_RS11595 overlap by 14 nucleotides DDA3937_RS11595 and DDA3937_RS11600 are separated by 217 nucleotides
DDA3937_RS11585: DDA3937_RS11585 - type III secretion system outer membrane ring subunit SctC, at 2,636,198 to 2,638,267
_RS11585
DDA3937_RS11590: DDA3937_RS11590 - hypothetical protein, at 2,638,260 to 2,638,694
_RS11590
DDA3937_RS11595: DDA3937_RS11595 - type III secretion protein HrpF, at 2,638,681 to 2,638,908
_RS11595
DDA3937_RS11600: DDA3937_RS11600 - hypothetical protein, at 2,639,126 to 2,640,175
_RS11600
Position (kb)
2638
2639 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2637.416 kb on - strand, within DDA3937_RS11585 at 2637.780 kb on + strand, within DDA3937_RS11585 at 2637.780 kb on + strand, within DDA3937_RS11585 at 2637.780 kb on + strand, within DDA3937_RS11585 at 2637.781 kb on - strand, within DDA3937_RS11585 at 2637.945 kb on + strand, within DDA3937_RS11585 at 2637.946 kb on - strand, within DDA3937_RS11585 at 2637.946 kb on - strand, within DDA3937_RS11585 at 2638.045 kb on + strand, within DDA3937_RS11585 at 2638.137 kb on + strand at 2638.138 kb on - strand at 2638.138 kb on - strand at 2638.144 kb on - strand at 2638.244 kb on + strand at 2638.244 kb on + strand at 2638.245 kb on - strand at 2638.245 kb on - strand at 2638.251 kb on + strand at 2638.251 kb on + strand at 2638.251 kb on + strand at 2638.251 kb on + strand at 2638.251 kb on + strand at 2638.251 kb on + strand at 2638.252 kb on - strand at 2638.252 kb on - strand at 2638.252 kb on - strand at 2638.252 kb on - strand at 2638.432 kb on - strand, within DDA3937_RS11590 at 2638.437 kb on + strand, within DDA3937_RS11590 at 2638.437 kb on + strand, within DDA3937_RS11590 at 2638.438 kb on - strand, within DDA3937_RS11590 at 2638.438 kb on - strand, within DDA3937_RS11590 at 2638.438 kb on - strand, within DDA3937_RS11590 at 2638.622 kb on + strand, within DDA3937_RS11590 at 2638.622 kb on + strand, within DDA3937_RS11590 at 2638.763 kb on + strand, within DDA3937_RS11595 at 2638.763 kb on + strand, within DDA3937_RS11595 at 2638.764 kb on - strand, within DDA3937_RS11595 at 2638.764 kb on - strand, within DDA3937_RS11595 at 2638.781 kb on + strand, within DDA3937_RS11595 at 2638.781 kb on + strand, within DDA3937_RS11595 at 2638.782 kb on - strand, within DDA3937_RS11595 at 2638.790 kb on + strand, within DDA3937_RS11595 at 2638.790 kb on + strand, within DDA3937_RS11595 at 2638.790 kb on + strand, within DDA3937_RS11595 at 2638.790 kb on + strand, within DDA3937_RS11595 at 2638.790 kb on + strand, within DDA3937_RS11595 at 2638.790 kb on + strand, within DDA3937_RS11595 at 2638.791 kb on - strand, within DDA3937_RS11595 at 2638.791 kb on - strand, within DDA3937_RS11595 at 2638.794 kb on + strand, within DDA3937_RS11595 at 2638.890 kb on + strand at 2638.890 kb on + strand at 2638.912 kb on + strand at 2638.912 kb on + strand at 2638.912 kb on + strand at 2638.912 kb on + strand at 2638.912 kb on + strand at 2638.912 kb on + strand at 2638.912 kb on + strand at 2638.912 kb on + strand at 2638.912 kb on + strand at 2638.912 kb on + strand at 2638.912 kb on + strand at 2638.912 kb on + strand at 2638.913 kb on - strand at 2638.913 kb on - strand at 2638.916 kb on + strand at 2638.917 kb on - strand at 2638.917 kb on - strand at 2638.917 kb on - strand at 2638.937 kb on + strand at 2638.937 kb on + strand at 2638.938 kb on - strand at 2638.938 kb on - strand at 2638.938 kb on - strand at 2638.938 kb on - strand at 2638.938 kb on - strand at 2638.954 kb on + strand at 2638.954 kb on + strand at 2638.954 kb on + strand at 2638.955 kb on - strand at 2638.955 kb on - strand at 2638.955 kb on - strand at 2638.955 kb on - strand at 2638.955 kb on - strand at 2639.049 kb on + strand at 2639.049 kb on + strand at 2639.050 kb on - strand at 2639.050 kb on - strand at 2639.050 kb on - strand at 2639.050 kb on - strand at 2639.059 kb on + strand at 2639.063 kb on + strand at 2639.064 kb on - strand at 2639.081 kb on + strand at 2639.081 kb on + strand at 2639.081 kb on + strand at 2639.082 kb on - strand at 2639.111 kb on + strand at 2639.140 kb on + strand at 2639.141 kb on - strand at 2639.141 kb on - strand at 2639.145 kb on + strand at 2639.146 kb on - strand at 2639.158 kb on - strand at 2639.244 kb on + strand, within DDA3937_RS11600 at 2639.245 kb on - strand, within DDA3937_RS11600 at 2639.595 kb on + strand, within DDA3937_RS11600 at 2639.595 kb on + strand, within DDA3937_RS11600 at 2639.596 kb on - strand, within DDA3937_RS11600 at 2639.596 kb on - strand, within DDA3937_RS11600 at 2639.596 kb on - strand, within DDA3937_RS11600 at 2639.671 kb on + strand, within DDA3937_RS11600 at 2639.672 kb on - strand, within DDA3937_RS11600 at 2639.672 kb on - strand, within DDA3937_RS11600 at 2639.689 kb on + strand, within DDA3937_RS11600 at 2639.690 kb on - strand, within DDA3937_RS11600
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 2,637,416 - DDA3937_RS11585 0.59 -2.2 2,637,780 + DDA3937_RS11585 0.76 -0.0 2,637,780 + DDA3937_RS11585 0.76 -0.3 2,637,780 + DDA3937_RS11585 0.76 +0.0 2,637,781 - DDA3937_RS11585 0.76 -0.0 2,637,945 + DDA3937_RS11585 0.84 +3.0 2,637,946 - DDA3937_RS11585 0.84 -1.1 2,637,946 - DDA3937_RS11585 0.84 -1.3 2,638,045 + DDA3937_RS11585 0.89 -0.5 2,638,137 + +1.7 2,638,138 - -0.7 2,638,138 - +0.1 2,638,144 - +1.0 2,638,244 + -0.4 2,638,244 + -1.6 2,638,245 - -1.0 2,638,245 - +1.0 2,638,251 + -0.7 2,638,251 + +1.0 2,638,251 + -0.6 2,638,251 + +1.0 2,638,251 + +0.8 2,638,251 + -2.4 2,638,252 - -1.2 2,638,252 - +0.2 2,638,252 - +0.1 2,638,252 - -2.4 2,638,432 - DDA3937_RS11590 0.40 -1.3 2,638,437 + DDA3937_RS11590 0.41 -0.4 2,638,437 + DDA3937_RS11590 0.41 -0.5 2,638,438 - DDA3937_RS11590 0.41 -1.5 2,638,438 - DDA3937_RS11590 0.41 -2.7 2,638,438 - DDA3937_RS11590 0.41 -2.0 2,638,622 + DDA3937_RS11590 0.83 -0.6 2,638,622 + DDA3937_RS11590 0.83 -2.0 2,638,763 + DDA3937_RS11595 0.36 -0.9 2,638,763 + DDA3937_RS11595 0.36 +1.0 2,638,764 - DDA3937_RS11595 0.36 -1.0 2,638,764 - DDA3937_RS11595 0.36 -1.0 2,638,781 + DDA3937_RS11595 0.44 -1.1 2,638,781 + DDA3937_RS11595 0.44 +0.3 2,638,782 - DDA3937_RS11595 0.44 +1.4 2,638,790 + DDA3937_RS11595 0.48 -0.6 2,638,790 + DDA3937_RS11595 0.48 -0.4 2,638,790 + DDA3937_RS11595 0.48 +1.4 2,638,790 + DDA3937_RS11595 0.48 -0.1 2,638,790 + DDA3937_RS11595 0.48 -2.7 2,638,790 + DDA3937_RS11595 0.48 -0.6 2,638,791 - DDA3937_RS11595 0.48 -0.4 2,638,791 - DDA3937_RS11595 0.48 -1.2 2,638,794 + DDA3937_RS11595 0.50 +0.0 2,638,890 + +0.0 2,638,890 + -1.6 2,638,912 + -1.6 2,638,912 + -0.4 2,638,912 + -0.5 2,638,912 + -2.3 2,638,912 + -0.7 2,638,912 + -0.9 2,638,912 + +1.1 2,638,912 + -1.2 2,638,912 + -1.4 2,638,912 + -0.2 2,638,912 + -0.3 2,638,912 + -0.6 2,638,913 - +0.3 2,638,913 - -1.0 2,638,916 + -1.1 2,638,917 - -0.1 2,638,917 - -0.9 2,638,917 - -1.4 2,638,937 + +1.3 2,638,937 + -1.8 2,638,938 - +0.7 2,638,938 - -0.4 2,638,938 - -1.1 2,638,938 - -1.6 2,638,938 - -1.3 2,638,954 + +2.2 2,638,954 + -0.5 2,638,954 + -0.8 2,638,955 - -0.8 2,638,955 - -0.7 2,638,955 - -0.7 2,638,955 - -3.2 2,638,955 - +0.8 2,639,049 + -0.7 2,639,049 + -0.7 2,639,050 - -0.7 2,639,050 - -0.8 2,639,050 - -1.5 2,639,050 - -1.2 2,639,059 + +1.7 2,639,063 + +0.1 2,639,064 - +1.2 2,639,081 + -0.2 2,639,081 + +0.6 2,639,081 + -1.1 2,639,082 - -2.0 2,639,111 + -0.7 2,639,140 + -3.2 2,639,141 - -0.6 2,639,141 - -0.3 2,639,145 + -1.0 2,639,146 - +0.0 2,639,158 - -1.0 2,639,244 + DDA3937_RS11600 0.11 -0.9 2,639,245 - DDA3937_RS11600 0.11 -1.4 2,639,595 + DDA3937_RS11600 0.45 -0.8 2,639,595 + DDA3937_RS11600 0.45 -1.3 2,639,596 - DDA3937_RS11600 0.45 +0.2 2,639,596 - DDA3937_RS11600 0.45 +0.1 2,639,596 - DDA3937_RS11600 0.45 -1.0 2,639,671 + DDA3937_RS11600 0.52 -1.4 2,639,672 - DDA3937_RS11600 0.52 -0.2 2,639,672 - DDA3937_RS11600 0.52 -0.5 2,639,689 + DDA3937_RS11600 0.54 -1.1 2,639,690 - DDA3937_RS11600 0.54 -0.7
Or see this region's nucleotide sequence