Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10635

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
2,393,320	+		DDA3937_RS10630	0.30	+0.3
2,393,320	+		DDA3937_RS10630	0.30	+0.8
2,393,320	+		DDA3937_RS10630	0.30	-0.1
2,393,321	-		DDA3937_RS10630	0.31	+1.4
2,393,321	-		DDA3937_RS10630	0.31	-0.9
2,393,321	-		DDA3937_RS10630	0.31	+0.5
2,393,321	-		DDA3937_RS10630	0.31	-0.7
2,393,321	-		DDA3937_RS10630	0.31	-0.6
2,393,534	+		DDA3937_RS10630	0.52	-1.7
2,393,585	+		DDA3937_RS10630	0.57	-1.1
2,393,619	+		DDA3937_RS10630	0.60	-1.3
2,393,620	-		DDA3937_RS10630	0.60	+0.4
2,393,679	+		DDA3937_RS10630	0.66	+1.3
2,393,680	-				-1.0
2,393,680	-		DDA3937_RS10630	0.66	-1.6
2,393,680	-		DDA3937_RS10630	0.66	-1.2
2,393,680	-		DDA3937_RS10630	0.66	+1.7
2,393,680	-		DDA3937_RS10630	0.66	+0.8
2,393,682	+		DDA3937_RS10630	0.66	-0.0
2,393,683	-		DDA3937_RS10630	0.66	+1.3
2,393,683	-		DDA3937_RS10630	0.66	-0.9
2,393,697	+		DDA3937_RS10630	0.68	+0.6
2,393,698	-		DDA3937_RS10630	0.68	-0.6
2,393,719	+		DDA3937_RS10630	0.70	+0.4
2,393,719	+		DDA3937_RS10630	0.70	+1.2
2,393,719	+		DDA3937_RS10630	0.70	-0.3
2,393,719	+		DDA3937_RS10630	0.70	+0.0
2,393,719	+				+1.0
2,393,720	-		DDA3937_RS10630	0.70	-0.6
2,393,720	-		DDA3937_RS10630	0.70	-0.7
2,393,720	-		DDA3937_RS10630	0.70	-1.3
2,393,720	-		DDA3937_RS10630	0.70	-0.7
2,393,720	-		DDA3937_RS10630	0.70	-2.1
2,393,720	-		DDA3937_RS10630	0.70	-1.7
2,393,720	-		DDA3937_RS10630	0.70	+1.0
2,393,720	-		DDA3937_RS10630	0.70	-1.6
2,393,720	-		DDA3937_RS10630	0.70	+0.2
2,393,722	+		DDA3937_RS10630	0.70	-0.3
2,393,722	+		DDA3937_RS10630	0.70	-0.7
2,393,746	+		DDA3937_RS10630	0.72	-0.7
2,393,747	-		DDA3937_RS10630	0.72	-1.6
2,393,747	-		DDA3937_RS10630	0.72	-2.1
2,393,763	+		DDA3937_RS10630	0.74	+0.4
2,393,763	+		DDA3937_RS10630	0.74	-1.2
2,393,763	+		DDA3937_RS10630	0.74	-1.6
2,393,763	+		DDA3937_RS10630	0.74	-0.4
2,393,764	-		DDA3937_RS10630	0.74	-1.6
2,393,764	-		DDA3937_RS10630	0.74	-0.1
2,393,764	-		DDA3937_RS10630	0.74	+0.1
2,393,764	-		DDA3937_RS10630	0.74	-0.7
2,393,785	+		DDA3937_RS10630	0.76	-0.6
2,393,786	-		DDA3937_RS10630	0.76	-0.1
2,393,930	+				-0.8
2,393,934	-				-0.9
2,393,973	-				-0.7
2,393,975	+				+0.1
2,393,975	+				-1.6
2,393,976	-				-0.3
2,393,976	-				+0.8
2,393,976	-				+1.3
2,394,020	+				+0.0
2,394,039	+				-1.3
2,394,040	-				+0.1
2,394,042	+				+0.4
2,394,137	-				-1.6
2,394,138	+				+0.2
2,394,145	-				-0.9
2,394,151	-				+2.0
2,394,154	+				+1.2
2,394,154	+				-1.8
2,394,155	-				-0.8
2,394,155	-				-1.0
2,394,156	+				+0.1
2,394,156	+				-0.4
2,394,156	+				-0.6
2,394,156	+				-1.8
2,394,156	+				-1.3
2,394,157	-				+0.5
2,394,157	-				+0.2
2,394,157	-				-0.0
2,394,157	-				-1.9
2,394,163	-				+0.2
2,394,168	+				+0.9
2,394,200	-				+0.0
2,394,242	-				+1.0
2,394,252	+				-2.3
2,394,252	+				-0.1
2,394,252	+				+0.0
2,394,253	-				+0.7
2,394,253	-				-1.0
2,394,253	-				-1.3
2,394,253	-				+0.9
2,394,253	-				-0.7
2,394,253	-				+0.0
2,394,286	+				+2.7
2,394,286	+				-1.8
2,394,287	-				-0.4
2,394,290	+				-0.2
2,394,291	-				+0.4
2,394,339	+				+1.0
2,394,363	+				-1.4
2,394,363	+				-0.8
2,394,364	-				+0.7
2,394,404	-		DDA3937_RS10635	0.12	-1.4
2,394,407	+		DDA3937_RS10635	0.13	+0.9
2,394,408	-		DDA3937_RS10635	0.13	-0.8
2,394,425	-		DDA3937_RS10635	0.14	-0.1
2,394,433	+				+1.0
2,394,434	-		DDA3937_RS10635	0.15	-1.6
2,394,435	+		DDA3937_RS10635	0.15	+0.6
2,394,435	+		DDA3937_RS10635	0.15	-0.5
2,394,477	+		DDA3937_RS10635	0.20	+1.4
2,394,478	-		DDA3937_RS10635	0.20	-0.9
2,394,479	+		DDA3937_RS10635	0.20	-2.7
2,394,479	+		DDA3937_RS10635	0.20	+0.3
2,394,479	+		DDA3937_RS10635	0.20	-0.7
2,394,496	-		DDA3937_RS10635	0.22	-0.3
2,394,640	+		DDA3937_RS10635	0.37	+0.0
2,394,640	+		DDA3937_RS10635	0.37	+1.6
2,394,641	-		DDA3937_RS10635	0.37	-0.7
2,394,645	+		DDA3937_RS10635	0.38	-0.4
2,394,645	+		DDA3937_RS10635	0.38	+1.0
2,394,675	+		DDA3937_RS10635	0.41	+0.8
2,394,676	-		DDA3937_RS10635	0.41	+1.3
2,394,678	-				+0.0
2,394,770	-		DDA3937_RS10635	0.51	+3.7
2,394,777	+		DDA3937_RS10635	0.52	-0.4
2,394,899	-		DDA3937_RS10635	0.65	+0.7
2,394,899	-		DDA3937_RS10635	0.65	+0.0
2,394,929	+		DDA3937_RS10635	0.68	-1.8
2,394,930	-		DDA3937_RS10635	0.68	-0.3
2,394,952	+		DDA3937_RS10635	0.70	-0.1
2,394,952	+		DDA3937_RS10635	0.70	+1.3
2,394,952	+		DDA3937_RS10635	0.70	+0.7
2,394,953	-		DDA3937_RS10635	0.70	-0.8
2,394,953	-		DDA3937_RS10635	0.70	-0.2
2,394,953	-				+0.0
2,394,985	+		DDA3937_RS10635	0.74	-0.6
2,394,986	-		DDA3937_RS10635	0.74	-2.7
2,394,992	+		DDA3937_RS10635	0.75	+0.8
2,395,033	+		DDA3937_RS10635	0.79	+0.0
2,395,034	-		DDA3937_RS10635	0.79	+1.0
2,395,083	+				+2.6
2,395,095	+		DDA3937_RS10635	0.86	+0.7
2,395,120	+		DDA3937_RS10635	0.88	+1.5
2,395,145	+				+0.3
2,395,250	-				-0.8
2,395,250	-				+0.7
2,395,271	-				-0.1
2,395,300	+				+0.0
2,395,300	+				+0.0
2,395,311	+				-0.7
2,395,312	-				-0.7
2,395,315	-				-1.0
2,395,320	+				-2.3
2,395,433	+		DDA3937_RS10640	0.19	-0.8
2,395,465	+		DDA3937_RS10640	0.26	+0.8
2,395,493	+		DDA3937_RS10640	0.32	-1.6
2,395,501	-		DDA3937_RS10640	0.34	-0.1
2,395,610	-		DDA3937_RS10640	0.57	-0.5
2,395,615	+		DDA3937_RS10640	0.58	-0.5
2,395,616	-		DDA3937_RS10640	0.58	-2.8
2,395,616	-		DDA3937_RS10640	0.58	+0.0
2,395,638	+		DDA3937_RS10640	0.63	-0.7
2,395,638	+		DDA3937_RS10640	0.63	-1.6
2,395,638	+		DDA3937_RS10640	0.63	+1.2
2,395,638	+		DDA3937_RS10640	0.63	+0.2
2,395,638	+		DDA3937_RS10640	0.63	-0.3
2,395,638	+		DDA3937_RS10640	0.63	-0.7
2,395,638	+		DDA3937_RS10640	0.63	+0.1
2,395,639	-		DDA3937_RS10640	0.63	-0.7
2,395,639	-		DDA3937_RS10640	0.63	-0.7
2,395,662	+		DDA3937_RS10640	0.68	-1.3
2,395,662	+		DDA3937_RS10640	0.68	-0.1
2,395,663	-		DDA3937_RS10640	0.69	-0.5
2,395,663	-		DDA3937_RS10640	0.69	-0.5
2,395,663	-		DDA3937_RS10640	0.69	-1.6
2,395,663	-		DDA3937_RS10640	0.69	+1.0
2,395,685	+		DDA3937_RS10640	0.73	-0.7
2,395,718	+				+2.0
2,395,740	-		DDA3937_RS10640	0.85	-0.8
2,395,757	+		DDA3937_RS10640	0.89	-1.9
2,395,792	+				-0.2
2,395,792	+				+0.6
2,395,792	+				+0.4
2,395,793	-				-1.0
2,395,793	-				-1.7
2,395,828	+				-0.2
2,395,828	+				-0.3
2,395,828	+				-0.7
2,395,828	+				+0.1
2,395,828	+				-0.3
2,395,828	+				+0.2
2,395,835	+				-0.0
2,395,857	-				+3.0
2,395,868	+				-0.2
2,395,868	+				+6.0
2,395,965	-				-2.6
2,396,104	+				+0.6
2,396,158	-				-0.7