Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10335

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
2,327,133	+		DDA3937_RS10325	0.79	-1.0
2,327,133	+		DDA3937_RS10325	0.79	-2.7
2,327,134	-		DDA3937_RS10325	0.80	-3.0
2,327,134	-		DDA3937_RS10325	0.80	-1.3
2,327,183	+		DDA3937_RS10325	0.85	+0.1
2,327,183	+		DDA3937_RS10325	0.85	-1.8
2,327,183	+		DDA3937_RS10325	0.85	-1.7
2,327,184	-		DDA3937_RS10325	0.85	-2.6
2,327,184	-		DDA3937_RS10325	0.85	-1.3
2,327,184	-		DDA3937_RS10325	0.85	-0.7
2,327,184	-		DDA3937_RS10325	0.85	+0.1
2,327,184	-		DDA3937_RS10325	0.85	-3.3
2,327,184	-		DDA3937_RS10325	0.85	-1.5
2,327,202	+		DDA3937_RS10325	0.88	-2.4
2,327,275	+				-2.7
2,327,385	+				-1.7
2,327,385	+				-0.4
2,327,385	+				-2.9
2,327,386	-				-1.9
2,327,386	-				+0.1
2,327,388	+				+0.1
2,327,388	+				-2.5
2,327,388	+				-0.2
2,327,388	+				-0.5
2,327,389	-				+1.1
2,327,475	+		DDA3937_RS10330	0.19	-1.5
2,327,475	+		DDA3937_RS10330	0.19	-2.5
2,327,475	+		DDA3937_RS10330	0.19	-2.5
2,327,475	+		DDA3937_RS10330	0.19	-2.4
2,327,476	-		DDA3937_RS10330	0.19	-0.4
2,327,476	-		DDA3937_RS10330	0.19	+0.0
2,327,476	-		DDA3937_RS10330	0.19	-1.5
2,327,476	-		DDA3937_RS10330	0.19	-0.9
2,327,476	-		DDA3937_RS10330	0.19	-0.5
2,327,476	-				+1.1
2,327,476	-		DDA3937_RS10330	0.19	+1.6
2,327,476	-		DDA3937_RS10330	0.19	+1.2
2,327,476	-		DDA3937_RS10330	0.19	-2.4
2,327,476	-		DDA3937_RS10330	0.19	-1.3
2,327,478	+		DDA3937_RS10330	0.19	-1.7
2,327,478	+		DDA3937_RS10330	0.19	-0.5
2,327,479	-		DDA3937_RS10330	0.20	+0.2
2,327,479	-		DDA3937_RS10330	0.20	+0.1
2,327,479	-		DDA3937_RS10330	0.20	-0.9
2,327,556	+				+0.1
2,327,577	+		DDA3937_RS10330	0.41	-0.5
2,327,712	+				+2.8
2,327,857	+				+1.1
2,327,857	+				+0.1
2,327,858	-				-0.5
2,327,858	-				-0.3
2,327,858	-				-0.8
2,327,858	-				-0.5
2,327,880	-				-0.6
2,327,886	-				+0.1
2,327,889	+				-0.5
2,327,890	-				-0.8
2,327,890	-				+1.3
2,327,890	-				-0.4
2,327,920	-				+0.4
2,327,920	-				-0.4
2,327,951	-				+0.2
2,327,967	+				-1.9
2,327,967	+				+2.1
2,327,968	-				-2.1
2,327,968	-				+0.1
2,327,968	-				-1.3
2,327,968	-				-0.8
2,327,971	+				-1.5
2,327,972	-				-1.1
2,327,990	-				-0.4
2,327,994	+				+1.1
2,327,995	-				-0.4
2,327,995	-				-0.7
2,328,020	-				-0.9
2,328,020	-				-0.9
2,328,033	+				+0.1
2,328,034	-				+0.1
2,328,034	-				-1.5
2,328,038	-				-0.8
2,328,038	-				-0.4
2,328,038	-				-0.5
2,328,038	-				+1.5
2,328,170	+		DDA3937_RS10335	0.16	-1.4
2,328,193	+		DDA3937_RS10335	0.19	-0.7
2,328,194	-		DDA3937_RS10335	0.19	-2.1
2,328,194	-		DDA3937_RS10335	0.19	+0.1
2,328,300	+		DDA3937_RS10335	0.31	-1.3
2,328,300	+		DDA3937_RS10335	0.31	+0.6
2,328,300	+		DDA3937_RS10335	0.31	-0.3
2,328,300	+		DDA3937_RS10335	0.31	-1.1
2,328,300	+		DDA3937_RS10335	0.31	-0.6
2,328,300	+		DDA3937_RS10335	0.31	+0.3
2,328,300	+		DDA3937_RS10335	0.31	-0.2
2,328,301	-		DDA3937_RS10335	0.31	-1.5
2,328,301	-		DDA3937_RS10335	0.31	-1.2
2,328,301	-		DDA3937_RS10335	0.31	-0.1
2,328,301	-		DDA3937_RS10335	0.31	-0.9
2,328,301	-		DDA3937_RS10335	0.31	-3.6
2,328,313	-		DDA3937_RS10335	0.32	-0.7
2,328,313	-		DDA3937_RS10335	0.32	+0.1
2,328,316	+		DDA3937_RS10335	0.32	-0.2
2,328,316	+		DDA3937_RS10335	0.32	-0.3
2,328,316	+		DDA3937_RS10335	0.32	+1.3
2,328,317	-		DDA3937_RS10335	0.32	-0.9
2,328,317	-		DDA3937_RS10335	0.32	-0.9
2,328,317	-				+1.1
2,328,317	-		DDA3937_RS10335	0.32	-0.3
2,328,325	+		DDA3937_RS10335	0.33	+0.5
2,328,325	+		DDA3937_RS10335	0.33	-2.8
2,328,325	+		DDA3937_RS10335	0.33	+0.5
2,328,326	-		DDA3937_RS10335	0.33	-0.9
2,328,326	-		DDA3937_RS10335	0.33	-0.0
2,328,326	-		DDA3937_RS10335	0.33	-0.2
2,328,326	-		DDA3937_RS10335	0.33	+0.4
2,328,347	+		DDA3937_RS10335	0.36	-0.9
2,328,347	+		DDA3937_RS10335	0.36	-1.5
2,328,348	-		DDA3937_RS10335	0.36	-0.5
2,328,364	+		DDA3937_RS10335	0.38	-0.3
2,328,364	+		DDA3937_RS10335	0.38	-0.4
2,328,364	+		DDA3937_RS10335	0.38	-1.1
2,328,365	-		DDA3937_RS10335	0.38	-2.1
2,328,408	+		DDA3937_RS10335	0.42	+0.0
2,328,408	+		DDA3937_RS10335	0.42	+0.8
2,328,408	+		DDA3937_RS10335	0.42	-1.3
2,328,408	+		DDA3937_RS10335	0.42	+0.1
2,328,408	+		DDA3937_RS10335	0.42	+0.3
2,328,408	+		DDA3937_RS10335	0.42	-1.0
2,328,409	-		DDA3937_RS10335	0.43	-2.9
2,328,409	-		DDA3937_RS10335	0.43	+0.8
2,328,414	+		DDA3937_RS10335	0.43	+0.1
2,328,414	+		DDA3937_RS10335	0.43	-0.2
2,328,414	+		DDA3937_RS10335	0.43	-0.4
2,328,415	-		DDA3937_RS10335	0.43	-0.8
2,328,415	-		DDA3937_RS10335	0.43	+0.9
2,328,415	-		DDA3937_RS10335	0.43	-0.4
2,328,415	-		DDA3937_RS10335	0.43	-2.4
2,328,415	-		DDA3937_RS10335	0.43	-0.7
2,328,415	-		DDA3937_RS10335	0.43	-1.7
2,328,415	-		DDA3937_RS10335	0.43	-2.4
2,328,415	-		DDA3937_RS10335	0.43	-0.6
2,328,415	-		DDA3937_RS10335	0.43	-0.4
2,328,415	-		DDA3937_RS10335	0.43	-1.1
2,328,418	+		DDA3937_RS10335	0.44	-1.9
2,328,419	-		DDA3937_RS10335	0.44	-0.2
2,328,436	+		DDA3937_RS10335	0.46	+2.2
2,328,602	-		DDA3937_RS10335	0.64	+2.1
2,328,736	+				+1.3
2,328,736	+		DDA3937_RS10335	0.79	+0.6
2,328,736	+		DDA3937_RS10335	0.79	+0.1
2,328,736	+		DDA3937_RS10335	0.79	-0.2
2,328,737	-		DDA3937_RS10335	0.79	-0.4
2,328,737	-		DDA3937_RS10335	0.79	+0.1
2,328,738	+		DDA3937_RS10335	0.79	-1.5
2,328,739	-		DDA3937_RS10335	0.79	-1.1
2,328,739	-		DDA3937_RS10335	0.79	-0.2
2,328,772	+		DDA3937_RS10335	0.83	+0.1
2,328,795	+		DDA3937_RS10335	0.85	+0.1
2,328,795	+		DDA3937_RS10335	0.85	-0.9
2,328,795	+		DDA3937_RS10335	0.85	-0.5
2,328,795	+		DDA3937_RS10335	0.85	-1.4
2,328,795	+		DDA3937_RS10335	0.85	+0.5
2,328,795	+		DDA3937_RS10335	0.85	+0.6
2,328,796	-		DDA3937_RS10335	0.85	+0.2
2,328,796	-		DDA3937_RS10335	0.85	-2.1
2,328,796	-		DDA3937_RS10335	0.85	-1.3
2,328,796	-		DDA3937_RS10335	0.85	+0.2
2,328,809	+		DDA3937_RS10335	0.87	+1.5
2,328,809	+		DDA3937_RS10335	0.87	-0.1
2,328,809	+		DDA3937_RS10335	0.87	+0.8
2,328,857	-				-2.3
2,328,924	+				-2.3
2,328,924	+				-0.2
2,328,924	+				+0.0
2,328,924	+				-0.5
2,328,924	+				-1.9
2,328,924	+				-0.3
2,328,925	-				-1.6
2,328,925	-				-2.3
2,328,925	-				-0.6
2,328,925	-				-1.5
2,328,925	-				+0.3
2,328,925	-				-2.1
2,328,925	-				-1.3
2,328,925	-				-0.2
2,328,925	-				-2.6
2,328,926	+				-0.2
2,328,926	+				+0.6
2,328,926	+				+0.4
2,328,932	+				+0.1
2,328,932	+				+0.3
2,328,932	+				-1.4
2,328,933	-				-1.7
2,328,933	-				-1.1
2,328,943	+				+3.9
2,328,944	-				+0.3
2,329,153	+		DDA3937_RS10340	0.16	-1.0
2,329,154	-		DDA3937_RS10340	0.16	-1.7
2,329,278	+		DDA3937_RS10340	0.28	+0.8
2,329,279	-		DDA3937_RS10340	0.29	-1.0
2,329,315	+		DDA3937_RS10340	0.32	-0.5
2,329,315	+		DDA3937_RS10340	0.32	-0.2
2,329,316	-		DDA3937_RS10340	0.32	-1.3
2,329,325	+		DDA3937_RS10340	0.33	-1.1
2,329,325	+		DDA3937_RS10340	0.33	-0.6
2,329,325	+		DDA3937_RS10340	0.33	+1.9
2,329,325	+		DDA3937_RS10340	0.33	-0.5
2,329,326	-		DDA3937_RS10340	0.33	-1.1
2,329,326	-		DDA3937_RS10340	0.33	-1.8
2,329,326	-		DDA3937_RS10340	0.33	-1.1
2,329,359	+		DDA3937_RS10340	0.36	-1.0
2,329,359	+		DDA3937_RS10340	0.36	-1.3
2,329,359	+		DDA3937_RS10340	0.36	-0.5
2,329,360	-		DDA3937_RS10340	0.37	-0.5
2,329,360	-		DDA3937_RS10340	0.37	-1.3
2,329,375	+		DDA3937_RS10340	0.38	-0.5
2,329,589	+		DDA3937_RS10340	0.59	+0.6
2,329,589	+		DDA3937_RS10340	0.59	-0.4
2,329,745	+		DDA3937_RS10340	0.74	+0.0
2,329,746	+		DDA3937_RS10340	0.74	-1.2
2,329,746	+		DDA3937_RS10340	0.74	-0.6
2,329,747	-		DDA3937_RS10340	0.75	-0.5
2,329,747	-		DDA3937_RS10340	0.75	-0.1
2,329,793	+		DDA3937_RS10340	0.79	-0.2
2,329,793	+		DDA3937_RS10340	0.79	-2.7
2,329,793	+		DDA3937_RS10340	0.79	-1.4
2,329,793	+		DDA3937_RS10340	0.79	-0.5
2,329,793	+		DDA3937_RS10340	0.79	+0.9
2,329,794	-		DDA3937_RS10340	0.79	+0.5
2,329,794	-		DDA3937_RS10340	0.79	-0.7
2,329,876	-		DDA3937_RS10340	0.87	-1.7
2,329,879	+		DDA3937_RS10340	0.88	-0.2
2,329,913	+				-0.0
2,329,919	-				-1.1