Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS05845 and DDA3937_RS05850 are separated by 123 nucleotides DDA3937_RS05850 and DDA3937_RS05855 are separated by 129 nucleotides DDA3937_RS05855 and DDA3937_RS05860 are separated by 2 nucleotides
DDA3937_RS05845: DDA3937_RS05845 - copper-exporting P-type ATPase CopA, at 1,309,664 to 1,312,483
_RS05845
DDA3937_RS05850: DDA3937_RS05850 - Cu(I)-responsive transcriptional regulator, at 1,312,607 to 1,313,029
_RS05850
DDA3937_RS05855: DDA3937_RS05855 - NfeD family protein, at 1,313,159 to 1,313,608
_RS05855
DDA3937_RS05860: DDA3937_RS05860 - SPFH/Band 7/PHB domain protein, at 1,313,611 to 1,314,525
_RS05860
Position (kb) 1312
1313
1314 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1311.952 kb on + strand, within DDA3937_RS05845 at 1311.953 kb on - strand, within DDA3937_RS05845 at 1312.172 kb on + strand, within DDA3937_RS05845 at 1312.172 kb on + strand, within DDA3937_RS05845 at 1312.173 kb on - strand, within DDA3937_RS05845 at 1312.173 kb on - strand, within DDA3937_RS05845 at 1312.273 kb on + strand at 1312.303 kb on - strand at 1312.365 kb on + strand at 1312.365 kb on + strand at 1312.365 kb on + strand at 1312.366 kb on - strand at 1312.376 kb on + strand at 1312.377 kb on - strand at 1312.377 kb on - strand at 1312.377 kb on - strand at 1312.377 kb on - strand at 1312.377 kb on - strand at 1312.377 kb on - strand at 1312.469 kb on + strand at 1312.469 kb on + strand at 1312.483 kb on + strand at 1312.483 kb on + strand at 1312.483 kb on + strand at 1312.483 kb on + strand at 1312.483 kb on + strand at 1312.483 kb on + strand at 1312.483 kb on + strand at 1312.484 kb on - strand at 1312.484 kb on - strand at 1312.484 kb on - strand at 1312.484 kb on - strand at 1312.484 kb on - strand at 1312.486 kb on + strand at 1312.486 kb on + strand at 1312.486 kb on + strand at 1312.486 kb on + strand at 1312.487 kb on - strand at 1312.487 kb on - strand at 1312.487 kb on - strand at 1312.487 kb on - strand at 1312.487 kb on - strand at 1312.487 kb on - strand at 1312.489 kb on + strand at 1312.490 kb on - strand at 1312.547 kb on + strand at 1312.548 kb on - strand at 1312.553 kb on + strand at 1312.553 kb on + strand at 1312.553 kb on + strand at 1312.553 kb on + strand at 1312.553 kb on + strand at 1312.554 kb on - strand at 1312.554 kb on - strand at 1312.554 kb on - strand at 1312.554 kb on - strand at 1312.561 kb on - strand at 1312.561 kb on - strand at 1312.561 kb on - strand at 1312.571 kb on + strand at 1312.572 kb on - strand at 1312.613 kb on - strand at 1312.613 kb on - strand at 1312.664 kb on + strand, within DDA3937_RS05850 at 1312.664 kb on + strand, within DDA3937_RS05850 at 1312.664 kb on + strand, within DDA3937_RS05850 at 1312.665 kb on - strand, within DDA3937_RS05850 at 1312.665 kb on - strand, within DDA3937_RS05850 at 1312.722 kb on - strand, within DDA3937_RS05850 at 1312.736 kb on - strand, within DDA3937_RS05850 at 1312.736 kb on - strand, within DDA3937_RS05850 at 1312.828 kb on - strand, within DDA3937_RS05850 at 1312.856 kb on - strand, within DDA3937_RS05850 at 1312.856 kb on - strand, within DDA3937_RS05850 at 1312.856 kb on - strand, within DDA3937_RS05850 at 1312.856 kb on - strand, within DDA3937_RS05850 at 1312.856 kb on - strand at 1312.856 kb on - strand, within DDA3937_RS05850 at 1312.975 kb on + strand, within DDA3937_RS05850 at 1313.034 kb on + strand at 1313.035 kb on - strand at 1313.037 kb on + strand at 1313.037 kb on + strand at 1313.037 kb on + strand at 1313.038 kb on - strand at 1313.038 kb on - strand at 1313.038 kb on - strand at 1313.038 kb on - strand at 1313.038 kb on - strand at 1313.097 kb on + strand at 1313.097 kb on + strand at 1313.097 kb on + strand at 1313.097 kb on + strand at 1313.104 kb on + strand at 1313.104 kb on + strand at 1313.105 kb on - strand at 1313.157 kb on + strand at 1313.165 kb on - strand at 1313.228 kb on + strand, within DDA3937_RS05855 at 1313.311 kb on + strand, within DDA3937_RS05855 at 1313.311 kb on + strand, within DDA3937_RS05855 at 1313.311 kb on + strand, within DDA3937_RS05855 at 1313.311 kb on + strand, within DDA3937_RS05855 at 1313.311 kb on + strand, within DDA3937_RS05855 at 1313.312 kb on - strand, within DDA3937_RS05855 at 1313.312 kb on - strand, within DDA3937_RS05855 at 1313.312 kb on - strand at 1313.312 kb on - strand, within DDA3937_RS05855 at 1313.312 kb on - strand, within DDA3937_RS05855 at 1313.314 kb on + strand, within DDA3937_RS05855 at 1313.314 kb on + strand, within DDA3937_RS05855 at 1313.314 kb on + strand, within DDA3937_RS05855 at 1313.315 kb on - strand, within DDA3937_RS05855 at 1313.315 kb on - strand, within DDA3937_RS05855 at 1313.315 kb on - strand, within DDA3937_RS05855 at 1313.315 kb on - strand, within DDA3937_RS05855 at 1313.315 kb on - strand, within DDA3937_RS05855 at 1313.750 kb on + strand, within DDA3937_RS05860 at 1313.750 kb on + strand at 1313.750 kb on + strand at 1313.751 kb on - strand at 1313.751 kb on - strand, within DDA3937_RS05860 at 1313.768 kb on + strand, within DDA3937_RS05860 at 1313.768 kb on + strand at 1313.769 kb on - strand, within DDA3937_RS05860 at 1313.769 kb on - strand, within DDA3937_RS05860 at 1313.898 kb on + strand, within DDA3937_RS05860 at 1313.970 kb on + strand, within DDA3937_RS05860 at 1313.971 kb on - strand, within DDA3937_RS05860 at 1313.986 kb on - strand, within DDA3937_RS05860
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 1,311,952 + DDA3937_RS05845 0.81 -0.9 1,311,953 - DDA3937_RS05845 0.81 -0.2 1,312,172 + DDA3937_RS05845 0.89 +0.4 1,312,172 + DDA3937_RS05845 0.89 -2.4 1,312,173 - DDA3937_RS05845 0.89 -1.7 1,312,173 - DDA3937_RS05845 0.89 +3.1 1,312,273 + -1.1 1,312,303 - +0.0 1,312,365 + -0.5 1,312,365 + -2.4 1,312,365 + -0.4 1,312,366 - -1.4 1,312,376 + -1.3 1,312,377 - +0.4 1,312,377 - +1.2 1,312,377 - -3.1 1,312,377 - +1.0 1,312,377 - -0.5 1,312,377 - +0.9 1,312,469 + +0.5 1,312,469 + -1.1 1,312,483 + -2.3 1,312,483 + -1.3 1,312,483 + -1.0 1,312,483 + -1.6 1,312,483 + -1.2 1,312,483 + +0.2 1,312,483 + -0.2 1,312,484 - +1.4 1,312,484 - -1.3 1,312,484 - -1.4 1,312,484 - +0.6 1,312,484 - +0.1 1,312,486 + -0.5 1,312,486 + -0.1 1,312,486 + +0.7 1,312,486 + -0.4 1,312,487 - +0.8 1,312,487 - +0.2 1,312,487 - +0.3 1,312,487 - -0.8 1,312,487 - -0.6 1,312,487 - -0.6 1,312,489 + +1.0 1,312,490 - -0.3 1,312,547 + -1.6 1,312,548 - -1.7 1,312,553 + -0.5 1,312,553 + -0.5 1,312,553 + +0.5 1,312,553 + -0.3 1,312,553 + -1.3 1,312,554 - +2.8 1,312,554 - +0.5 1,312,554 - -2.6 1,312,554 - +1.8 1,312,561 - -2.7 1,312,561 - -1.3 1,312,561 - -0.8 1,312,571 + +0.1 1,312,572 - -0.5 1,312,613 - -2.9 1,312,613 - -0.6 1,312,664 + DDA3937_RS05850 0.13 -0.9 1,312,664 + DDA3937_RS05850 0.13 -0.7 1,312,664 + DDA3937_RS05850 0.13 -1.2 1,312,665 - DDA3937_RS05850 0.14 +0.4 1,312,665 - DDA3937_RS05850 0.14 +1.0 1,312,722 - DDA3937_RS05850 0.27 -0.0 1,312,736 - DDA3937_RS05850 0.30 +0.4 1,312,736 - DDA3937_RS05850 0.30 -1.1 1,312,828 - DDA3937_RS05850 0.52 +1.2 1,312,856 - DDA3937_RS05850 0.59 -1.0 1,312,856 - DDA3937_RS05850 0.59 +0.5 1,312,856 - DDA3937_RS05850 0.59 -1.3 1,312,856 - DDA3937_RS05850 0.59 -0.6 1,312,856 - -0.2 1,312,856 - DDA3937_RS05850 0.59 -0.6 1,312,975 + DDA3937_RS05850 0.87 -0.9 1,313,034 + -0.4 1,313,035 - +3.5 1,313,037 + +2.5 1,313,037 + -0.6 1,313,037 + -0.1 1,313,038 - -0.2 1,313,038 - +0.9 1,313,038 - +0.6 1,313,038 - -0.6 1,313,038 - +0.4 1,313,097 + -1.4 1,313,097 + +0.0 1,313,097 + -1.4 1,313,097 + -0.3 1,313,104 + +2.0 1,313,104 + -0.1 1,313,105 - +0.2 1,313,157 + -1.0 1,313,165 - +0.4 1,313,228 + DDA3937_RS05855 0.15 -2.5 1,313,311 + DDA3937_RS05855 0.34 -0.4 1,313,311 + DDA3937_RS05855 0.34 +1.8 1,313,311 + DDA3937_RS05855 0.34 -1.7 1,313,311 + DDA3937_RS05855 0.34 +0.1 1,313,311 + DDA3937_RS05855 0.34 -0.9 1,313,312 - DDA3937_RS05855 0.34 +1.4 1,313,312 - DDA3937_RS05855 0.34 -1.2 1,313,312 - -0.6 1,313,312 - DDA3937_RS05855 0.34 -0.9 1,313,312 - DDA3937_RS05855 0.34 -2.3 1,313,314 + DDA3937_RS05855 0.34 -0.5 1,313,314 + DDA3937_RS05855 0.34 -0.5 1,313,314 + DDA3937_RS05855 0.34 -0.4 1,313,315 - DDA3937_RS05855 0.35 -0.2 1,313,315 - DDA3937_RS05855 0.35 +0.1 1,313,315 - DDA3937_RS05855 0.35 +0.7 1,313,315 - DDA3937_RS05855 0.35 -0.5 1,313,315 - DDA3937_RS05855 0.35 +2.4 1,313,750 + DDA3937_RS05860 0.15 -0.2 1,313,750 + -1.2 1,313,750 + +0.4 1,313,751 - +0.8 1,313,751 - DDA3937_RS05860 0.15 -1.1 1,313,768 + DDA3937_RS05860 0.17 -0.5 1,313,768 + -0.9 1,313,769 - DDA3937_RS05860 0.17 -0.9 1,313,769 - DDA3937_RS05860 0.17 -0.4 1,313,898 + DDA3937_RS05860 0.31 +0.7 1,313,970 + DDA3937_RS05860 0.39 -0.0 1,313,971 - DDA3937_RS05860 0.39 -0.5 1,313,986 - DDA3937_RS05860 0.41 -1.2
Or see this region's nucleotide sequence