Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05370

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS05360 and DDA3937_RS05365 are separated by 30 nucleotidesDDA3937_RS05365 and DDA3937_RS05370 are separated by 108 nucleotidesDDA3937_RS05370 and DDA3937_RS23465 are separated by 10 nucleotidesDDA3937_RS23465 and DDA3937_RS05375 overlap by 45 nucleotides DDA3937_RS05360: DDA3937_RS05360 - LysR family transcriptional regulator, at 1,194,015 to 1,194,956 _RS05360 DDA3937_RS05365: DDA3937_RS05365 - HAD-IB family hydrolase, at 1,194,987 to 1,195,643 _RS05365 DDA3937_RS05370: DDA3937_RS05370 - alpha/beta fold hydrolase, at 1,195,752 to 1,196,951 _RS05370 DDA3937_RS23465: DDA3937_RS23465 - hypothetical protein, at 1,196,962 to 1,197,378 _RS23465 DDA3937_RS05375: DDA3937_RS05375 - methionine synthase, at 1,197,334 to 1,198,434 _RS05375 Position (kb) 1195 1196 1197Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1194.842 kb on + strand, within DDA3937_RS05360at 1194.863 kb on - strandat 1194.969 kb on + strandat 1194.976 kb on + strandat 1195.063 kb on + strand, within DDA3937_RS05365at 1195.063 kb on + strand, within DDA3937_RS05365at 1195.063 kb on + strand, within DDA3937_RS05365at 1195.063 kb on + strand, within DDA3937_RS05365at 1195.063 kb on + strand, within DDA3937_RS05365at 1195.114 kb on + strand, within DDA3937_RS05365at 1195.192 kb on + strand, within DDA3937_RS05365at 1195.192 kb on + strand, within DDA3937_RS05365at 1195.211 kb on + strand, within DDA3937_RS05365at 1195.320 kb on - strand, within DDA3937_RS05365at 1195.471 kb on + strand, within DDA3937_RS05365at 1195.471 kb on + strand, within DDA3937_RS05365at 1195.472 kb on - strand, within DDA3937_RS05365at 1195.472 kb on - strand, within DDA3937_RS05365at 1195.472 kb on - strand, within DDA3937_RS05365at 1195.477 kb on + strand, within DDA3937_RS05365at 1195.477 kb on + strand, within DDA3937_RS05365at 1195.477 kb on + strand, within DDA3937_RS05365at 1195.477 kb on + strand, within DDA3937_RS05365at 1195.477 kb on + strand, within DDA3937_RS05365at 1195.477 kb on + strand, within DDA3937_RS05365at 1195.477 kb on + strand, within DDA3937_RS05365at 1195.477 kb on + strand, within DDA3937_RS05365at 1195.477 kb on + strand, within DDA3937_RS05365at 1195.477 kb on + strand, within DDA3937_RS05365at 1195.478 kb on - strand, within DDA3937_RS05365at 1195.478 kb on - strand, within DDA3937_RS05365at 1195.478 kb on - strand, within DDA3937_RS05365at 1195.478 kb on - strand, within DDA3937_RS05365at 1195.478 kb on - strand, within DDA3937_RS05365at 1195.478 kb on - strand, within DDA3937_RS05365at 1195.478 kb on - strand, within DDA3937_RS05365at 1195.478 kb on - strand, within DDA3937_RS05365at 1195.504 kb on + strand, within DDA3937_RS05365at 1195.504 kb on + strand, within DDA3937_RS05365at 1195.504 kb on + strand, within DDA3937_RS05365at 1195.504 kb on + strand, within DDA3937_RS05365at 1195.505 kb on - strand, within DDA3937_RS05365at 1195.507 kb on + strand, within DDA3937_RS05365at 1195.507 kb on + strand, within DDA3937_RS05365at 1195.507 kb on + strand, within DDA3937_RS05365at 1195.507 kb on + strand, within DDA3937_RS05365at 1195.507 kb on + strand, within DDA3937_RS05365at 1195.507 kb on + strand, within DDA3937_RS05365at 1195.508 kb on - strand, within DDA3937_RS05365at 1195.508 kb on - strand, within DDA3937_RS05365at 1195.508 kb on - strand, within DDA3937_RS05365at 1195.508 kb on - strand, within DDA3937_RS05365at 1195.508 kb on - strand, within DDA3937_RS05365at 1195.536 kb on + strand, within DDA3937_RS05365at 1195.536 kb on + strand, within DDA3937_RS05365at 1195.536 kb on + strand, within DDA3937_RS05365at 1195.536 kb on + strand, within DDA3937_RS05365at 1195.537 kb on - strand, within DDA3937_RS05365at 1195.635 kb on + strandat 1195.636 kb on - strandat 1195.636 kb on - strandat 1195.726 kb on + strandat 1195.727 kb on - strandat 1195.799 kb on + strandat 1195.800 kb on - strandat 1195.800 kb on - strandat 1195.819 kb on + strandat 1195.819 kb on + strandat 1195.819 kb on + strandat 1195.820 kb on - strandat 1195.839 kb on + strandat 1195.839 kb on + strandat 1195.839 kb on + strandat 1195.839 kb on + strandat 1195.840 kb on - strandat 1195.840 kb on - strandat 1195.840 kb on - strandat 1195.840 kb on - strandat 1195.840 kb on - strandat 1195.851 kb on - strandat 1195.851 kb on - strandat 1195.879 kb on + strand, within DDA3937_RS05370at 1195.944 kb on + strand, within DDA3937_RS05370at 1195.945 kb on - strand, within DDA3937_RS05370at 1195.966 kb on + strand, within DDA3937_RS05370at 1195.966 kb on + strand, within DDA3937_RS05370at 1195.966 kb on + strand, within DDA3937_RS05370at 1195.966 kb on + strand, within DDA3937_RS05370at 1195.966 kb on + strand, within DDA3937_RS05370at 1195.967 kb on - strand, within DDA3937_RS05370at 1195.967 kb on - strand, within DDA3937_RS05370at 1196.130 kb on + strand, within DDA3937_RS05370at 1196.131 kb on - strand, within DDA3937_RS05370at 1196.131 kb on - strand, within DDA3937_RS05370at 1196.249 kb on - strand, within DDA3937_RS05370at 1196.257 kb on - strand, within DDA3937_RS05370at 1196.281 kb on + strand, within DDA3937_RS05370at 1196.438 kb on - strand, within DDA3937_RS05370at 1196.438 kb on - strand, within DDA3937_RS05370at 1196.479 kb on + strand, within DDA3937_RS05370at 1196.479 kb on + strand, within DDA3937_RS05370at 1196.479 kb on + strand, within DDA3937_RS05370at 1196.479 kb on + strand, within DDA3937_RS05370at 1196.480 kb on - strand, within DDA3937_RS05370at 1196.480 kb on - strand, within DDA3937_RS05370at 1196.592 kb on + strand, within DDA3937_RS05370at 1196.592 kb on + strand, within DDA3937_RS05370at 1196.592 kb on + strand, within DDA3937_RS05370at 1196.593 kb on - strand, within DDA3937_RS05370at 1196.611 kb on + strand, within DDA3937_RS05370at 1196.611 kb on + strand, within DDA3937_RS05370at 1196.611 kb on + strand, within DDA3937_RS05370at 1196.612 kb on - strand, within DDA3937_RS05370at 1196.612 kb on - strand, within DDA3937_RS05370at 1196.809 kb on + strand, within DDA3937_RS05370at 1196.810 kb on - strand, within DDA3937_RS05370at 1196.963 kb on + strandat 1196.982 kb on + strandat 1196.983 kb on - strandat 1196.983 kb on - strandat 1196.985 kb on + strandat 1196.986 kb on - strandat 1196.993 kb on + strandat 1197.295 kb on + strand, within DDA3937_RS23465at 1197.295 kb on + strand, within DDA3937_RS23465at 1197.296 kb on - strand, within DDA3937_RS23465at 1197.296 kb on - strand, within DDA3937_RS23465at 1197.296 kb on - strand, within DDA3937_RS23465at 1197.296 kb on - strand, within DDA3937_RS23465at 1197.314 kb on - strand, within DDA3937_RS23465at 1197.314 kb on - strand, within DDA3937_RS23465at 1197.381 kb on - strandat 1197.381 kb on - strandat 1197.381 kb on - strandat 1197.408 kb on - strandat 1197.647 kb on + strand, within DDA3937_RS05375at 1197.647 kb on + strand, within DDA3937_RS05375at 1197.647 kb on + strand, within DDA3937_RS05375at 1197.648 kb on - strand, within DDA3937_RS05375at 1197.648 kb on - strand, within DDA3937_RS05375at 1197.648 kb on - strand, within DDA3937_RS05375at 1197.651 kb on + strand, within DDA3937_RS05375at 1197.651 kb on + strand, within DDA3937_RS05375at 1197.651 kb on + strand, within DDA3937_RS05375at 1197.651 kb on + strand, within DDA3937_RS05375at 1197.651 kb on + strand, within DDA3937_RS05375at 1197.651 kb on + strand, within DDA3937_RS05375at 1197.651 kb on + strand, within DDA3937_RS05375at 1197.688 kb on + strand, within DDA3937_RS05375at 1197.688 kb on + strand, within DDA3937_RS05375at 1197.688 kb on + strand, within DDA3937_RS05375at 1197.688 kb on + strand, within DDA3937_RS05375at 1197.688 kb on + strand, within DDA3937_RS05375at 1197.688 kb on + strand, within DDA3937_RS05375at 1197.689 kb on - strand, within DDA3937_RS05375at 1197.689 kb on - strand, within DDA3937_RS05375at 1197.689 kb on - strand, within DDA3937_RS05375at 1197.689 kb on - strand, within DDA3937_RS05375at 1197.772 kb on + strand, within DDA3937_RS05375at 1197.773 kb on - strand, within DDA3937_RS05375at 1197.773 kb on - strand, within DDA3937_RS05375at 1197.773 kb on - strand, within DDA3937_RS05375at 1197.839 kb on + strand, within DDA3937_RS05375at 1197.840 kb on - strand, within DDA3937_RS05375at 1197.841 kb on + strand, within DDA3937_RS05375at 1197.865 kb on + strand, within DDA3937_RS05375

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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1,194,842 + DDA3937_RS05360 0.88 +0.7
1,194,863 - -0.6
1,194,969 + -0.5
1,194,976 + +0.3
1,195,063 + DDA3937_RS05365 0.12 +1.4
1,195,063 + DDA3937_RS05365 0.12 +0.5
1,195,063 + DDA3937_RS05365 0.12 -0.3
1,195,063 + DDA3937_RS05365 0.12 +0.6
1,195,063 + DDA3937_RS05365 0.12 +0.3
1,195,114 + DDA3937_RS05365 0.19 -1.4
1,195,192 + DDA3937_RS05365 0.31 +0.1
1,195,192 + DDA3937_RS05365 0.31 -2.2
1,195,211 + DDA3937_RS05365 0.34 -0.6
1,195,320 - DDA3937_RS05365 0.51 +0.4
1,195,471 + DDA3937_RS05365 0.74 +0.2
1,195,471 + DDA3937_RS05365 0.74 +1.1
1,195,472 - DDA3937_RS05365 0.74 +0.5
1,195,472 - DDA3937_RS05365 0.74 -1.0
1,195,472 - DDA3937_RS05365 0.74 +1.0
1,195,477 + DDA3937_RS05365 0.75 -1.1
1,195,477 + DDA3937_RS05365 0.75 -0.9
1,195,477 + DDA3937_RS05365 0.75 -2.1
1,195,477 + DDA3937_RS05365 0.75 +0.7
1,195,477 + DDA3937_RS05365 0.75 +0.4
1,195,477 + DDA3937_RS05365 0.75 +0.0
1,195,477 + DDA3937_RS05365 0.75 -1.4
1,195,477 + DDA3937_RS05365 0.75 +0.9
1,195,477 + DDA3937_RS05365 0.75 -0.9
1,195,477 + DDA3937_RS05365 0.75 +0.3
1,195,478 - DDA3937_RS05365 0.75 -1.3
1,195,478 - DDA3937_RS05365 0.75 -0.5
1,195,478 - DDA3937_RS05365 0.75 -0.6
1,195,478 - DDA3937_RS05365 0.75 -0.2
1,195,478 - DDA3937_RS05365 0.75 -0.6
1,195,478 - DDA3937_RS05365 0.75 -0.6
1,195,478 - DDA3937_RS05365 0.75 +0.0
1,195,478 - DDA3937_RS05365 0.75 +0.5
1,195,504 + DDA3937_RS05365 0.79 -0.9
1,195,504 + DDA3937_RS05365 0.79 -0.4
1,195,504 + DDA3937_RS05365 0.79 +0.0
1,195,504 + DDA3937_RS05365 0.79 -0.8
1,195,505 - DDA3937_RS05365 0.79 +0.1
1,195,507 + DDA3937_RS05365 0.79 +1.3
1,195,507 + DDA3937_RS05365 0.79 -0.1
1,195,507 + DDA3937_RS05365 0.79 -0.4
1,195,507 + DDA3937_RS05365 0.79 -1.7
1,195,507 + DDA3937_RS05365 0.79 -0.9
1,195,507 + DDA3937_RS05365 0.79 -2.2
1,195,508 - DDA3937_RS05365 0.79 -0.2
1,195,508 - DDA3937_RS05365 0.79 -0.2
1,195,508 - DDA3937_RS05365 0.79 +0.2
1,195,508 - DDA3937_RS05365 0.79 -0.1
1,195,508 - DDA3937_RS05365 0.79 -0.2
1,195,536 + DDA3937_RS05365 0.84 -0.1
1,195,536 + DDA3937_RS05365 0.84 -1.5
1,195,536 + DDA3937_RS05365 0.84 -0.4
1,195,536 + DDA3937_RS05365 0.84 -0.5
1,195,537 - DDA3937_RS05365 0.84 +1.2
1,195,635 + -1.9
1,195,636 - +0.1
1,195,636 - -0.2
1,195,726 + -2.8
1,195,727 - +1.1
1,195,799 + -0.6
1,195,800 - -0.3
1,195,800 - +0.1
1,195,819 + -1.7
1,195,819 + -1.3
1,195,819 + +1.1
1,195,820 - +0.1
1,195,839 + -0.6
1,195,839 + +2.4
1,195,839 + +0.1
1,195,839 + +0.8
1,195,840 - +2.4
1,195,840 - +0.4
1,195,840 - -2.5
1,195,840 - -0.2
1,195,840 - +0.2
1,195,851 - -0.4
1,195,851 - +1.7
1,195,879 + DDA3937_RS05370 0.11 +0.3
1,195,944 + DDA3937_RS05370 0.16 -0.4
1,195,945 - DDA3937_RS05370 0.16 -1.2
1,195,966 + DDA3937_RS05370 0.18 +0.7
1,195,966 + DDA3937_RS05370 0.18 -0.5
1,195,966 + DDA3937_RS05370 0.18 -1.5
1,195,966 + DDA3937_RS05370 0.18 -2.7
1,195,966 + DDA3937_RS05370 0.18 +0.2
1,195,967 - DDA3937_RS05370 0.18 -0.9
1,195,967 - DDA3937_RS05370 0.18 +0.2
1,196,130 + DDA3937_RS05370 0.32 +1.4
1,196,131 - DDA3937_RS05370 0.32 +0.7
1,196,131 - DDA3937_RS05370 0.32 -0.1
1,196,249 - DDA3937_RS05370 0.41 -2.8
1,196,257 - DDA3937_RS05370 0.42 -1.5
1,196,281 + DDA3937_RS05370 0.44 -1.4
1,196,438 - DDA3937_RS05370 0.57 -0.7
1,196,438 - DDA3937_RS05370 0.57 -0.1
1,196,479 + DDA3937_RS05370 0.61 -1.7
1,196,479 + DDA3937_RS05370 0.61 -2.0
1,196,479 + DDA3937_RS05370 0.61 +0.6
1,196,479 + DDA3937_RS05370 0.61 +0.5
1,196,480 - DDA3937_RS05370 0.61 -0.2
1,196,480 - DDA3937_RS05370 0.61 -0.6
1,196,592 + DDA3937_RS05370 0.70 -0.8
1,196,592 + DDA3937_RS05370 0.70 -0.2
1,196,592 + DDA3937_RS05370 0.70 -0.3
1,196,593 - DDA3937_RS05370 0.70 +0.1
1,196,611 + DDA3937_RS05370 0.72 -1.2
1,196,611 + DDA3937_RS05370 0.72 -1.0
1,196,611 + DDA3937_RS05370 0.72 -0.9
1,196,612 - DDA3937_RS05370 0.72 -0.2
1,196,612 - DDA3937_RS05370 0.72 -0.9
1,196,809 + DDA3937_RS05370 0.88 +0.0
1,196,810 - DDA3937_RS05370 0.88 -0.0
1,196,963 + -0.3
1,196,982 + -0.4
1,196,983 - +0.8
1,196,983 - -0.8
1,196,985 + -0.6
1,196,986 - -0.8
1,196,993 + -1.4
1,197,295 + DDA3937_RS23465 0.80 -1.0
1,197,295 + DDA3937_RS23465 0.80 -0.9
1,197,296 - DDA3937_RS23465 0.80 -0.8
1,197,296 - DDA3937_RS23465 0.80 -0.2
1,197,296 - DDA3937_RS23465 0.80 -0.4
1,197,296 - DDA3937_RS23465 0.80 +0.2
1,197,314 - DDA3937_RS23465 0.84 +0.4
1,197,314 - DDA3937_RS23465 0.84 -2.4
1,197,381 - -1.1
1,197,381 - -1.4
1,197,381 - -0.4
1,197,408 - +0.4
1,197,647 + DDA3937_RS05375 0.28 -0.8
1,197,647 + DDA3937_RS05375 0.28 -1.4
1,197,647 + DDA3937_RS05375 0.28 +0.3
1,197,648 - DDA3937_RS05375 0.29 -1.6
1,197,648 - DDA3937_RS05375 0.29 +0.1
1,197,648 - DDA3937_RS05375 0.29 +0.2
1,197,651 + DDA3937_RS05375 0.29 -1.4
1,197,651 + DDA3937_RS05375 0.29 -1.5
1,197,651 + DDA3937_RS05375 0.29 -2.1
1,197,651 + DDA3937_RS05375 0.29 +0.2
1,197,651 + DDA3937_RS05375 0.29 +1.0
1,197,651 + DDA3937_RS05375 0.29 -0.1
1,197,651 + DDA3937_RS05375 0.29 +1.4
1,197,688 + DDA3937_RS05375 0.32 -0.8
1,197,688 + DDA3937_RS05375 0.32 +0.5
1,197,688 + DDA3937_RS05375 0.32 -0.3
1,197,688 + DDA3937_RS05375 0.32 +0.0
1,197,688 + DDA3937_RS05375 0.32 -0.1
1,197,688 + DDA3937_RS05375 0.32 +0.4
1,197,689 - DDA3937_RS05375 0.32 -1.6
1,197,689 - DDA3937_RS05375 0.32 +0.5
1,197,689 - DDA3937_RS05375 0.32 +0.2
1,197,689 - DDA3937_RS05375 0.32 +0.4
1,197,772 + DDA3937_RS05375 0.40 +2.0
1,197,773 - DDA3937_RS05375 0.40 +0.1
1,197,773 - DDA3937_RS05375 0.40 -0.4
1,197,773 - DDA3937_RS05375 0.40 -1.5
1,197,839 + DDA3937_RS05375 0.46 -0.6
1,197,840 - DDA3937_RS05375 0.46 -0.3
1,197,841 + DDA3937_RS05375 0.46 -1.5
1,197,865 + DDA3937_RS05375 0.48 +0.8

Or see this region's nucleotide sequence