Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04490 and DDA3937_RS04495 are separated by 162 nucleotides DDA3937_RS04495 and DDA3937_RS04500 are separated by 222 nucleotides
DDA3937_RS04490: DDA3937_RS04490 - cysteine synthase A, at 991,743 to 992,711
_RS04490
DDA3937_RS04495: DDA3937_RS04495 - sulfate transporter CysZ, at 992,874 to 993,644
_RS04495
DDA3937_RS04500: DDA3937_RS04500 - cell division protein ZipA, at 993,867 to 994,793
_RS04500
Position (kb) 992
993
994 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 992.149 kb on + strand, within DDA3937_RS04490 at 992.150 kb on - strand, within DDA3937_RS04490 at 992.150 kb on - strand, within DDA3937_RS04490 at 992.150 kb on - strand, within DDA3937_RS04490 at 992.150 kb on - strand, within DDA3937_RS04490 at 992.299 kb on + strand, within DDA3937_RS04490 at 992.453 kb on + strand, within DDA3937_RS04490 at 992.476 kb on + strand, within DDA3937_RS04490 at 992.476 kb on + strand, within DDA3937_RS04490 at 992.477 kb on - strand, within DDA3937_RS04490 at 992.477 kb on - strand, within DDA3937_RS04490 at 992.499 kb on - strand, within DDA3937_RS04490 at 992.699 kb on - strand at 992.705 kb on + strand at 992.705 kb on + strand at 992.711 kb on + strand at 992.722 kb on + strand at 992.725 kb on + strand at 992.725 kb on + strand at 992.726 kb on - strand at 992.726 kb on - strand at 992.760 kb on + strand at 992.760 kb on + strand at 992.760 kb on + strand at 992.761 kb on - strand at 992.804 kb on + strand at 992.834 kb on - strand at 992.841 kb on + strand at 992.841 kb on + strand at 992.842 kb on - strand at 992.842 kb on - strand at 992.843 kb on + strand at 992.843 kb on + strand at 992.843 kb on + strand at 992.844 kb on - strand at 992.844 kb on - strand at 992.844 kb on - strand at 992.850 kb on + strand at 992.850 kb on + strand at 992.850 kb on + strand at 992.850 kb on + strand at 992.850 kb on + strand at 992.850 kb on + strand at 992.850 kb on + strand at 992.966 kb on + strand, within DDA3937_RS04495 at 992.966 kb on + strand, within DDA3937_RS04495 at 992.966 kb on + strand, within DDA3937_RS04495 at 992.967 kb on - strand, within DDA3937_RS04495 at 993.012 kb on + strand, within DDA3937_RS04495 at 993.012 kb on + strand, within DDA3937_RS04495 at 993.013 kb on - strand, within DDA3937_RS04495 at 993.013 kb on - strand, within DDA3937_RS04495 at 993.186 kb on + strand, within DDA3937_RS04495 at 993.193 kb on - strand, within DDA3937_RS04495 at 993.201 kb on + strand, within DDA3937_RS04495 at 993.202 kb on - strand, within DDA3937_RS04495 at 993.205 kb on + strand, within DDA3937_RS04495 at 993.205 kb on + strand, within DDA3937_RS04495 at 993.205 kb on + strand, within DDA3937_RS04495 at 993.206 kb on - strand, within DDA3937_RS04495 at 993.421 kb on + strand, within DDA3937_RS04495 at 993.421 kb on + strand, within DDA3937_RS04495 at 993.524 kb on + strand, within DDA3937_RS04495 at 993.525 kb on - strand, within DDA3937_RS04495 at 993.598 kb on + strand at 993.598 kb on + strand at 993.598 kb on + strand at 993.599 kb on - strand at 993.637 kb on + strand at 993.661 kb on + strand at 993.661 kb on + strand at 993.661 kb on + strand at 993.661 kb on + strand at 993.662 kb on - strand at 993.662 kb on - strand at 993.662 kb on - strand at 993.667 kb on - strand at 993.667 kb on - strand at 993.685 kb on + strand at 993.708 kb on + strand at 993.709 kb on - strand at 993.709 kb on - strand at 993.709 kb on - strand at 993.760 kb on - strand at 993.760 kb on - strand at 993.762 kb on + strand at 993.763 kb on - strand at 993.767 kb on + strand at 993.772 kb on + strand at 993.795 kb on + strand at 993.813 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.825 kb on + strand at 993.845 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 992,149 + DDA3937_RS04490 0.42 -1.4 992,150 - DDA3937_RS04490 0.42 +2.7 992,150 - DDA3937_RS04490 0.42 -0.9 992,150 - DDA3937_RS04490 0.42 -0.1 992,150 - DDA3937_RS04490 0.42 +0.2 992,299 + DDA3937_RS04490 0.57 -1.0 992,453 + DDA3937_RS04490 0.73 +0.9 992,476 + DDA3937_RS04490 0.76 +0.1 992,476 + DDA3937_RS04490 0.76 -0.9 992,477 - DDA3937_RS04490 0.76 +0.6 992,477 - DDA3937_RS04490 0.76 -0.4 992,499 - DDA3937_RS04490 0.78 -0.7 992,699 - -0.6 992,705 + +0.4 992,705 + -0.4 992,711 + +0.2 992,722 + +1.4 992,725 + -0.9 992,725 + -1.4 992,726 - +0.4 992,726 - +0.4 992,760 + -0.8 992,760 + +0.9 992,760 + -0.4 992,761 - -0.1 992,804 + -0.0 992,834 - +1.5 992,841 + +1.8 992,841 + -0.6 992,842 - +0.8 992,842 - -0.8 992,843 + +0.7 992,843 + -0.7 992,843 + -0.1 992,844 - +0.4 992,844 - -1.4 992,844 - +0.3 992,850 + +0.6 992,850 + +0.2 992,850 + -0.1 992,850 + -0.7 992,850 + +0.1 992,850 + +0.4 992,850 + -1.5 992,966 + DDA3937_RS04495 0.12 -0.2 992,966 + DDA3937_RS04495 0.12 +0.3 992,966 + DDA3937_RS04495 0.12 -0.9 992,967 - DDA3937_RS04495 0.12 +0.4 993,012 + DDA3937_RS04495 0.18 -0.7 993,012 + DDA3937_RS04495 0.18 -1.1 993,013 - DDA3937_RS04495 0.18 -1.5 993,013 - DDA3937_RS04495 0.18 +1.3 993,186 + DDA3937_RS04495 0.40 -0.7 993,193 - DDA3937_RS04495 0.41 +0.4 993,201 + DDA3937_RS04495 0.42 +0.9 993,202 - DDA3937_RS04495 0.43 +0.2 993,205 + DDA3937_RS04495 0.43 -0.6 993,205 + DDA3937_RS04495 0.43 -2.3 993,205 + DDA3937_RS04495 0.43 -0.7 993,206 - DDA3937_RS04495 0.43 +0.8 993,421 + DDA3937_RS04495 0.71 +1.4 993,421 + DDA3937_RS04495 0.71 +5.0 993,524 + DDA3937_RS04495 0.84 -0.6 993,525 - DDA3937_RS04495 0.84 -0.4 993,598 + -1.6 993,598 + -0.9 993,598 + +1.4 993,599 - -0.4 993,637 + -2.1 993,661 + +1.6 993,661 + -2.0 993,661 + -0.2 993,661 + -1.7 993,662 - -0.5 993,662 - +0.2 993,662 - -2.0 993,667 - +0.0 993,667 - +1.4 993,685 + -0.3 993,708 + -0.7 993,709 - -0.0 993,709 - +0.4 993,709 - +1.2 993,760 - -1.1 993,760 - -0.0 993,762 + +0.4 993,763 - +0.4 993,767 + +0.4 993,772 + -1.7 993,795 + +0.4 993,813 + +1.4 993,819 + -3.8 993,819 + -3.1 993,819 + -0.7 993,819 + -1.4 993,819 + -1.7 993,819 + -0.1 993,819 + -0.3 993,819 + +0.4 993,825 + -1.8 993,845 + +0.2
Or see this region's nucleotide sequence