Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03755 and DDA3937_RS03760 are separated by 27 nucleotides DDA3937_RS03760 and DDA3937_RS03765 are separated by 246 nucleotides
DDA3937_RS03755: DDA3937_RS03755 - MFS transporter, at 831,912 to 833,126
_RS03755
DDA3937_RS03760: DDA3937_RS03760 - o-succinylbenzoate synthase, at 833,154 to 834,266
_RS03760
DDA3937_RS03765: DDA3937_RS03765 - nucleoside recognition family protein, at 834,513 to 835,445
_RS03765
Position (kb) 833
834
835 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12 at 832.178 kb on + strand, within DDA3937_RS03755 at 832.179 kb on - strand, within DDA3937_RS03755 at 832.179 kb on - strand, within DDA3937_RS03755 at 832.217 kb on - strand, within DDA3937_RS03755 at 832.344 kb on + strand, within DDA3937_RS03755 at 832.344 kb on + strand, within DDA3937_RS03755 at 832.344 kb on + strand, within DDA3937_RS03755 at 832.344 kb on + strand, within DDA3937_RS03755 at 832.345 kb on - strand at 832.345 kb on - strand, within DDA3937_RS03755 at 832.345 kb on - strand, within DDA3937_RS03755 at 832.345 kb on - strand, within DDA3937_RS03755 at 832.345 kb on - strand, within DDA3937_RS03755 at 832.455 kb on + strand, within DDA3937_RS03755 at 832.456 kb on - strand, within DDA3937_RS03755 at 832.456 kb on - strand, within DDA3937_RS03755 at 832.456 kb on - strand, within DDA3937_RS03755 at 832.456 kb on - strand, within DDA3937_RS03755 at 832.456 kb on - strand, within DDA3937_RS03755 at 832.457 kb on + strand, within DDA3937_RS03755 at 832.458 kb on - strand, within DDA3937_RS03755 at 832.458 kb on - strand, within DDA3937_RS03755 at 832.553 kb on - strand, within DDA3937_RS03755 at 832.623 kb on + strand, within DDA3937_RS03755 at 832.666 kb on + strand, within DDA3937_RS03755 at 832.683 kb on + strand, within DDA3937_RS03755 at 832.683 kb on + strand, within DDA3937_RS03755 at 832.683 kb on + strand, within DDA3937_RS03755 at 832.797 kb on + strand, within DDA3937_RS03755 at 832.806 kb on + strand, within DDA3937_RS03755 at 832.806 kb on + strand, within DDA3937_RS03755 at 832.806 kb on + strand, within DDA3937_RS03755 at 832.806 kb on + strand, within DDA3937_RS03755 at 832.807 kb on - strand, within DDA3937_RS03755 at 833.007 kb on + strand at 833.008 kb on - strand at 833.078 kb on + strand at 833.078 kb on + strand at 833.078 kb on + strand at 833.173 kb on + strand at 833.210 kb on + strand at 833.210 kb on + strand at 833.210 kb on + strand at 833.210 kb on + strand at 833.211 kb on - strand at 833.211 kb on - strand at 833.241 kb on + strand at 833.241 kb on + strand at 833.242 kb on - strand at 833.251 kb on + strand at 833.316 kb on + strand, within DDA3937_RS03760 at 833.316 kb on + strand, within DDA3937_RS03760 at 833.317 kb on - strand, within DDA3937_RS03760 at 833.395 kb on + strand, within DDA3937_RS03760 at 833.395 kb on + strand, within DDA3937_RS03760 at 833.395 kb on + strand, within DDA3937_RS03760 at 833.396 kb on - strand, within DDA3937_RS03760 at 833.487 kb on + strand, within DDA3937_RS03760 at 833.488 kb on - strand, within DDA3937_RS03760 at 833.488 kb on - strand, within DDA3937_RS03760 at 833.488 kb on - strand, within DDA3937_RS03760 at 833.557 kb on + strand, within DDA3937_RS03760 at 833.558 kb on - strand, within DDA3937_RS03760 at 833.643 kb on - strand, within DDA3937_RS03760 at 833.643 kb on - strand, within DDA3937_RS03760 at 833.670 kb on + strand, within DDA3937_RS03760 at 833.671 kb on - strand, within DDA3937_RS03760 at 833.671 kb on - strand, within DDA3937_RS03760 at 833.671 kb on - strand, within DDA3937_RS03760 at 833.672 kb on + strand, within DDA3937_RS03760 at 833.672 kb on + strand, within DDA3937_RS03760 at 833.673 kb on - strand, within DDA3937_RS03760 at 833.673 kb on - strand, within DDA3937_RS03760 at 833.673 kb on - strand at 833.705 kb on + strand, within DDA3937_RS03760 at 833.747 kb on + strand, within DDA3937_RS03760 at 833.747 kb on + strand, within DDA3937_RS03760 at 833.775 kb on + strand, within DDA3937_RS03760 at 833.776 kb on - strand, within DDA3937_RS03760 at 833.776 kb on - strand, within DDA3937_RS03760 at 833.836 kb on + strand, within DDA3937_RS03760 at 833.837 kb on - strand, within DDA3937_RS03760 at 833.837 kb on - strand, within DDA3937_RS03760 at 833.936 kb on + strand, within DDA3937_RS03760 at 834.047 kb on + strand, within DDA3937_RS03760 at 834.047 kb on + strand, within DDA3937_RS03760 at 834.048 kb on - strand, within DDA3937_RS03760 at 834.225 kb on + strand at 834.226 kb on - strand at 834.226 kb on - strand at 834.240 kb on + strand at 834.240 kb on + strand at 834.240 kb on + strand at 834.240 kb on + strand at 834.241 kb on - strand at 834.241 kb on - strand at 834.264 kb on + strand at 834.265 kb on - strand at 834.305 kb on + strand at 834.317 kb on + strand at 834.317 kb on + strand at 834.317 kb on + strand at 834.318 kb on - strand at 834.318 kb on - strand at 834.318 kb on - strand at 834.321 kb on + strand at 834.321 kb on + strand at 834.321 kb on + strand at 834.321 kb on + strand at 834.321 kb on + strand at 834.321 kb on + strand at 834.322 kb on - strand at 834.338 kb on + strand at 834.338 kb on + strand at 834.338 kb on + strand at 834.338 kb on + strand at 834.339 kb on - strand at 834.339 kb on - strand at 834.339 kb on - strand at 834.339 kb on - strand at 834.479 kb on + strand at 834.479 kb on + strand at 834.479 kb on + strand at 834.479 kb on + strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.510 kb on + strand at 834.510 kb on + strand at 834.510 kb on + strand at 834.510 kb on + strand at 834.510 kb on + strand at 834.510 kb on + strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.570 kb on + strand at 834.570 kb on + strand at 834.570 kb on + strand at 834.570 kb on + strand at 834.571 kb on - strand at 834.571 kb on - strand at 834.571 kb on - strand at 834.571 kb on - strand at 834.572 kb on + strand at 834.572 kb on + strand at 834.572 kb on + strand at 834.573 kb on - strand at 834.573 kb on - strand at 834.573 kb on - strand at 834.573 kb on - strand at 834.573 kb on - strand at 834.573 kb on - strand at 834.573 kb on - strand at 834.692 kb on + strand, within DDA3937_RS03765 at 834.693 kb on - strand, within DDA3937_RS03765 at 834.792 kb on - strand, within DDA3937_RS03765 at 834.838 kb on + strand, within DDA3937_RS03765 at 834.838 kb on + strand, within DDA3937_RS03765 at 834.838 kb on + strand, within DDA3937_RS03765 at 834.838 kb on + strand at 834.838 kb on + strand, within DDA3937_RS03765 at 834.838 kb on + strand, within DDA3937_RS03765 at 834.838 kb on + strand, within DDA3937_RS03765 at 834.839 kb on - strand at 834.839 kb on - strand, within DDA3937_RS03765 at 834.839 kb on - strand, within DDA3937_RS03765 at 834.886 kb on + strand, within DDA3937_RS03765 at 834.886 kb on + strand, within DDA3937_RS03765 at 834.886 kb on + strand, within DDA3937_RS03765 at 834.887 kb on - strand, within DDA3937_RS03765 at 834.887 kb on - strand, within DDA3937_RS03765 at 834.889 kb on + strand, within DDA3937_RS03765 at 834.927 kb on + strand, within DDA3937_RS03765 at 834.927 kb on + strand, within DDA3937_RS03765 at 834.927 kb on + strand, within DDA3937_RS03765 at 834.927 kb on + strand, within DDA3937_RS03765 at 834.927 kb on + strand, within DDA3937_RS03765 at 834.927 kb on + strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 835.025 kb on + strand, within DDA3937_RS03765 at 835.025 kb on + strand, within DDA3937_RS03765 at 835.026 kb on - strand, within DDA3937_RS03765 at 835.026 kb on - strand, within DDA3937_RS03765 at 835.028 kb on + strand, within DDA3937_RS03765 at 835.088 kb on + strand, within DDA3937_RS03765 at 835.172 kb on + strand at 835.173 kb on - strand, within DDA3937_RS03765 at 835.173 kb on - strand, within DDA3937_RS03765 at 835.230 kb on + strand, within DDA3937_RS03765
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 832,178 + DDA3937_RS03755 0.22 -1.3 832,179 - DDA3937_RS03755 0.22 -0.3 832,179 - DDA3937_RS03755 0.22 -1.1 832,217 - DDA3937_RS03755 0.25 +1.5 832,344 + DDA3937_RS03755 0.36 +3.5 832,344 + DDA3937_RS03755 0.36 -2.5 832,344 + DDA3937_RS03755 0.36 +0.3 832,344 + DDA3937_RS03755 0.36 -0.5 832,345 - +0.5 832,345 - DDA3937_RS03755 0.36 +0.7 832,345 - DDA3937_RS03755 0.36 -0.7 832,345 - DDA3937_RS03755 0.36 +0.8 832,345 - DDA3937_RS03755 0.36 -1.3 832,455 + DDA3937_RS03755 0.45 +0.1 832,456 - DDA3937_RS03755 0.45 +0.2 832,456 - DDA3937_RS03755 0.45 -0.8 832,456 - DDA3937_RS03755 0.45 +0.1 832,456 - DDA3937_RS03755 0.45 -0.8 832,456 - DDA3937_RS03755 0.45 -0.8 832,457 + DDA3937_RS03755 0.45 -1.1 832,458 - DDA3937_RS03755 0.45 +0.7 832,458 - DDA3937_RS03755 0.45 -0.3 832,553 - DDA3937_RS03755 0.53 -1.9 832,623 + DDA3937_RS03755 0.59 -1.2 832,666 + DDA3937_RS03755 0.62 -2.2 832,683 + DDA3937_RS03755 0.63 -0.2 832,683 + DDA3937_RS03755 0.63 +3.5 832,683 + DDA3937_RS03755 0.63 -0.9 832,797 + DDA3937_RS03755 0.73 -0.1 832,806 + DDA3937_RS03755 0.74 -0.6 832,806 + DDA3937_RS03755 0.74 -2.7 832,806 + DDA3937_RS03755 0.74 -0.5 832,806 + DDA3937_RS03755 0.74 +0.5 832,807 - DDA3937_RS03755 0.74 -0.1 833,007 + -0.5 833,008 - -0.8 833,078 + +0.9 833,078 + +0.5 833,078 + -0.0 833,173 + +0.6 833,210 + -1.4 833,210 + -0.5 833,210 + -0.7 833,210 + +0.2 833,211 - -1.0 833,211 - -0.3 833,241 + +1.6 833,241 + +0.8 833,242 - -0.8 833,251 + -0.2 833,316 + DDA3937_RS03760 0.15 +0.1 833,316 + DDA3937_RS03760 0.15 +0.7 833,317 - DDA3937_RS03760 0.15 -0.1 833,395 + DDA3937_RS03760 0.22 +1.1 833,395 + DDA3937_RS03760 0.22 -0.8 833,395 + DDA3937_RS03760 0.22 +11.9 833,396 - DDA3937_RS03760 0.22 +1.0 833,487 + DDA3937_RS03760 0.30 -1.2 833,488 - DDA3937_RS03760 0.30 -0.2 833,488 - DDA3937_RS03760 0.30 -3.0 833,488 - DDA3937_RS03760 0.30 +3.1 833,557 + DDA3937_RS03760 0.36 +0.5 833,558 - DDA3937_RS03760 0.36 -0.5 833,643 - DDA3937_RS03760 0.44 -0.7 833,643 - DDA3937_RS03760 0.44 -1.5 833,670 + DDA3937_RS03760 0.46 -0.4 833,671 - DDA3937_RS03760 0.46 -0.4 833,671 - DDA3937_RS03760 0.46 -1.8 833,671 - DDA3937_RS03760 0.46 +0.2 833,672 + DDA3937_RS03760 0.47 -0.1 833,672 + DDA3937_RS03760 0.47 +0.6 833,673 - DDA3937_RS03760 0.47 +0.3 833,673 - DDA3937_RS03760 0.47 -0.3 833,673 - -0.5 833,705 + DDA3937_RS03760 0.50 -0.2 833,747 + DDA3937_RS03760 0.53 -0.8 833,747 + DDA3937_RS03760 0.53 -2.0 833,775 + DDA3937_RS03760 0.56 +0.7 833,776 - DDA3937_RS03760 0.56 +4.1 833,776 - DDA3937_RS03760 0.56 -0.7 833,836 + DDA3937_RS03760 0.61 +0.6 833,837 - DDA3937_RS03760 0.61 +0.3 833,837 - DDA3937_RS03760 0.61 -1.1 833,936 + DDA3937_RS03760 0.70 +0.5 834,047 + DDA3937_RS03760 0.80 +0.7 834,047 + DDA3937_RS03760 0.80 -0.1 834,048 - DDA3937_RS03760 0.80 +0.6 834,225 + -0.2 834,226 - +0.9 834,226 - +0.1 834,240 + -1.1 834,240 + -1.3 834,240 + -0.6 834,240 + -0.0 834,241 - +0.2 834,241 - -2.1 834,264 + -2.2 834,265 - -0.7 834,305 + +0.1 834,317 + -0.6 834,317 + -0.1 834,317 + +0.1 834,318 - -0.3 834,318 - -0.1 834,318 - -0.3 834,321 + +0.1 834,321 + -1.8 834,321 + +0.2 834,321 + -0.5 834,321 + -0.2 834,321 + +0.6 834,322 - -1.6 834,338 + -0.7 834,338 + -2.7 834,338 + +0.6 834,338 + -0.7 834,339 - +0.4 834,339 - -0.3 834,339 - -1.8 834,339 - -0.4 834,479 + -0.4 834,479 + -1.8 834,479 + +0.6 834,479 + +1.1 834,480 - -1.1 834,480 - -0.8 834,480 - -0.2 834,480 - -0.5 834,480 - +0.1 834,480 - +0.0 834,510 + -0.8 834,510 + +1.5 834,510 + -0.1 834,510 + -0.2 834,510 + -1.6 834,510 + -3.0 834,511 - -1.0 834,511 - -0.1 834,511 - -0.7 834,511 - -0.8 834,511 - -1.7 834,511 - +1.1 834,511 - -0.4 834,511 - +0.0 834,570 + -1.0 834,570 + +0.7 834,570 + -1.3 834,570 + -1.0 834,571 - +1.6 834,571 - -0.4 834,571 - +0.3 834,571 - +0.3 834,572 + -1.5 834,572 + +0.5 834,572 + +1.1 834,573 - +0.1 834,573 - +0.1 834,573 - -0.7 834,573 - -0.8 834,573 - +8.4 834,573 - -0.1 834,573 - -0.7 834,692 + DDA3937_RS03765 0.19 -2.7 834,693 - DDA3937_RS03765 0.19 +0.4 834,792 - DDA3937_RS03765 0.30 +0.2 834,838 + DDA3937_RS03765 0.35 -1.0 834,838 + DDA3937_RS03765 0.35 +0.1 834,838 + DDA3937_RS03765 0.35 +0.8 834,838 + +1.5 834,838 + DDA3937_RS03765 0.35 +1.5 834,838 + DDA3937_RS03765 0.35 -0.1 834,838 + DDA3937_RS03765 0.35 -0.8 834,839 - -0.8 834,839 - DDA3937_RS03765 0.35 +1.2 834,839 - DDA3937_RS03765 0.35 -1.4 834,886 + DDA3937_RS03765 0.40 +0.4 834,886 + DDA3937_RS03765 0.40 -1.3 834,886 + DDA3937_RS03765 0.40 +1.4 834,887 - DDA3937_RS03765 0.40 -1.5 834,887 - DDA3937_RS03765 0.40 +0.3 834,889 + DDA3937_RS03765 0.40 +0.1 834,927 + DDA3937_RS03765 0.44 +0.7 834,927 + DDA3937_RS03765 0.44 -0.3 834,927 + DDA3937_RS03765 0.44 -1.2 834,927 + DDA3937_RS03765 0.44 +0.8 834,927 + DDA3937_RS03765 0.44 -0.4 834,927 + DDA3937_RS03765 0.44 -1.3 834,928 - DDA3937_RS03765 0.44 +0.0 834,928 - DDA3937_RS03765 0.44 -0.4 834,928 - DDA3937_RS03765 0.44 +0.5 834,928 - DDA3937_RS03765 0.44 -0.3 834,928 - DDA3937_RS03765 0.44 -0.9 834,928 - DDA3937_RS03765 0.44 -2.0 834,928 - DDA3937_RS03765 0.44 +0.7 835,025 + DDA3937_RS03765 0.55 +0.1 835,025 + DDA3937_RS03765 0.55 -0.5 835,026 - DDA3937_RS03765 0.55 -0.2 835,026 - DDA3937_RS03765 0.55 +0.1 835,028 + DDA3937_RS03765 0.55 -0.1 835,088 + DDA3937_RS03765 0.62 -0.4 835,172 + -1.1 835,173 - DDA3937_RS03765 0.71 -0.1 835,173 - DDA3937_RS03765 0.71 +0.8 835,230 + DDA3937_RS03765 0.77 -0.5
Or see this region's nucleotide sequence