Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03490 and DDA3937_RS03495 are separated by 931 nucleotides DDA3937_RS03495 and DDA3937_RS03500 are separated by 126 nucleotides
DDA3937_RS03490: DDA3937_RS03490 - TonB-dependent siderophore receptor, at 765,345 to 767,732
_RS03490
DDA3937_RS03495: DDA3937_RS03495 - mandelate racemase family protein, at 768,664 to 769,818
_RS03495
DDA3937_RS03500: DDA3937_RS03500 - ABC transporter substrate-binding protein, at 769,945 to 771,555
_RS03500
Position (kb) 768
769
770 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 767.682 kb on + strand at 767.682 kb on + strand at 767.682 kb on + strand at 767.683 kb on - strand at 767.683 kb on - strand at 767.683 kb on - strand at 767.683 kb on - strand at 767.685 kb on + strand at 767.685 kb on + strand at 767.702 kb on + strand at 767.702 kb on + strand at 767.702 kb on + strand at 767.702 kb on + strand at 767.703 kb on - strand at 767.705 kb on + strand at 767.721 kb on + strand at 767.722 kb on - strand at 767.730 kb on + strand at 767.730 kb on + strand at 767.733 kb on + strand at 767.733 kb on + strand at 767.733 kb on + strand at 767.734 kb on - strand at 767.734 kb on - strand at 767.734 kb on - strand at 767.735 kb on + strand at 767.735 kb on + strand at 767.735 kb on + strand at 767.735 kb on + strand at 767.736 kb on - strand at 767.745 kb on - strand at 767.791 kb on + strand at 767.791 kb on + strand at 767.791 kb on + strand at 767.791 kb on + strand at 767.792 kb on - strand at 767.794 kb on + strand at 767.794 kb on + strand at 767.794 kb on + strand at 767.794 kb on + strand at 767.795 kb on - strand at 767.795 kb on - strand at 767.799 kb on + strand at 767.799 kb on + strand at 767.800 kb on - strand at 767.903 kb on - strand at 767.903 kb on - strand at 767.915 kb on - strand at 767.915 kb on - strand at 767.915 kb on - strand at 767.921 kb on - strand at 767.998 kb on + strand at 767.998 kb on + strand at 767.998 kb on + strand at 767.998 kb on + strand at 767.998 kb on + strand at 767.998 kb on + strand at 768.067 kb on - strand at 768.090 kb on + strand at 768.091 kb on - strand at 768.091 kb on - strand at 768.094 kb on + strand at 768.094 kb on + strand at 768.094 kb on + strand at 768.124 kb on - strand at 768.188 kb on - strand at 768.335 kb on - strand at 768.335 kb on - strand at 768.337 kb on + strand at 768.337 kb on + strand at 768.338 kb on - strand at 768.339 kb on + strand at 768.357 kb on + strand at 768.364 kb on - strand at 768.364 kb on - strand at 768.392 kb on + strand at 768.550 kb on - strand at 768.551 kb on + strand at 768.570 kb on - strand at 768.577 kb on + strand at 768.578 kb on - strand at 768.584 kb on + strand at 768.584 kb on + strand at 768.584 kb on + strand at 768.584 kb on + strand at 768.585 kb on - strand at 768.585 kb on - strand at 768.586 kb on + strand at 768.587 kb on - strand at 768.587 kb on - strand at 768.587 kb on - strand at 768.587 kb on - strand at 768.604 kb on + strand at 768.615 kb on + strand at 768.641 kb on + strand at 768.642 kb on - strand at 768.642 kb on - strand at 768.646 kb on - strand at 768.658 kb on - strand at 768.671 kb on + strand at 768.672 kb on - strand at 768.700 kb on + strand at 768.700 kb on + strand at 768.700 kb on + strand at 768.700 kb on + strand at 768.700 kb on + strand at 768.774 kb on - strand at 769.024 kb on + strand, within DDA3937_RS03495 at 769.024 kb on + strand, within DDA3937_RS03495 at 769.024 kb on + strand, within DDA3937_RS03495 at 769.024 kb on + strand, within DDA3937_RS03495 at 769.024 kb on + strand, within DDA3937_RS03495 at 769.025 kb on - strand, within DDA3937_RS03495 at 769.025 kb on - strand, within DDA3937_RS03495 at 769.026 kb on + strand, within DDA3937_RS03495 at 769.315 kb on + strand, within DDA3937_RS03495 at 769.316 kb on - strand, within DDA3937_RS03495 at 769.316 kb on - strand, within DDA3937_RS03495 at 769.316 kb on - strand, within DDA3937_RS03495 at 769.776 kb on + strand at 769.776 kb on + strand at 769.776 kb on + strand at 769.776 kb on + strand at 769.816 kb on + strand at 769.858 kb on - strand at 769.873 kb on + strand at 769.874 kb on - strand at 769.921 kb on + strand at 769.921 kb on + strand at 769.921 kb on + strand at 769.921 kb on + strand at 769.922 kb on - strand at 769.922 kb on - strand at 769.922 kb on - strand at 769.944 kb on - strand at 769.961 kb on + strand at 769.961 kb on + strand at 769.961 kb on + strand at 769.961 kb on + strand at 769.962 kb on - strand at 769.962 kb on - strand at 769.992 kb on + strand at 769.992 kb on + strand at 769.993 kb on - strand at 769.993 kb on - strand at 770.117 kb on + strand, within DDA3937_RS03500 at 770.117 kb on + strand, within DDA3937_RS03500 at 770.118 kb on - strand, within DDA3937_RS03500 at 770.131 kb on + strand, within DDA3937_RS03500 at 770.132 kb on - strand, within DDA3937_RS03500 at 770.178 kb on - strand, within DDA3937_RS03500 at 770.430 kb on + strand, within DDA3937_RS03500 at 770.445 kb on + strand, within DDA3937_RS03500 at 770.445 kb on + strand, within DDA3937_RS03500 at 770.445 kb on + strand, within DDA3937_RS03500 at 770.445 kb on + strand, within DDA3937_RS03500 at 770.446 kb on - strand, within DDA3937_RS03500 at 770.446 kb on - strand, within DDA3937_RS03500 at 770.446 kb on - strand, within DDA3937_RS03500 at 770.452 kb on + strand, within DDA3937_RS03500 at 770.452 kb on + strand, within DDA3937_RS03500 at 770.764 kb on - strand, within DDA3937_RS03500 at 770.772 kb on + strand, within DDA3937_RS03500 at 770.812 kb on + strand, within DDA3937_RS03500 at 770.812 kb on + strand, within DDA3937_RS03500 at 770.812 kb on + strand, within DDA3937_RS03500 at 770.813 kb on - strand, within DDA3937_RS03500 at 770.815 kb on + strand, within DDA3937_RS03500 at 770.815 kb on + strand, within DDA3937_RS03500 at 770.815 kb on + strand, within DDA3937_RS03500 at 770.816 kb on - strand, within DDA3937_RS03500 at 770.816 kb on - strand, within DDA3937_RS03500 at 770.816 kb on - strand, within DDA3937_RS03500
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 767,682 + -1.6 767,682 + -2.8 767,682 + -1.2 767,683 - -0.1 767,683 - -0.1 767,683 - +0.1 767,683 - -0.6 767,685 + -0.6 767,685 + +0.7 767,702 + -1.1 767,702 + -0.5 767,702 + +0.4 767,702 + -1.1 767,703 - +1.0 767,705 + -1.5 767,721 + -0.1 767,722 - -2.2 767,730 + -0.3 767,730 + -2.0 767,733 + +0.1 767,733 + +0.7 767,733 + -0.6 767,734 - -2.3 767,734 - +2.3 767,734 - -1.1 767,735 + +1.5 767,735 + -0.3 767,735 + +0.9 767,735 + +1.0 767,736 - +1.4 767,745 - -0.5 767,791 + -0.9 767,791 + -0.1 767,791 + +1.6 767,791 + +1.8 767,792 - -0.5 767,794 + +0.6 767,794 + -1.8 767,794 + +0.1 767,794 + -2.2 767,795 - -1.7 767,795 - -0.7 767,799 + +1.0 767,799 + -0.6 767,800 - -0.4 767,903 - -0.0 767,903 - +1.0 767,915 - -0.1 767,915 - -0.7 767,915 - -0.9 767,921 - -0.2 767,998 + -0.4 767,998 + -0.1 767,998 + -1.7 767,998 + -1.2 767,998 + +1.5 767,998 + -0.8 768,067 - -0.2 768,090 + +1.1 768,091 - -0.4 768,091 - -0.2 768,094 + -0.5 768,094 + -0.7 768,094 + +0.3 768,124 - -2.7 768,188 - -1.0 768,335 - +0.7 768,335 - +1.8 768,337 + +1.2 768,337 + +1.2 768,338 - +0.2 768,339 + +2.2 768,357 + +2.5 768,364 - -0.3 768,364 - -1.5 768,392 + +1.6 768,550 - -1.1 768,551 + -1.1 768,570 - +0.3 768,577 + +0.3 768,578 - +0.6 768,584 + +0.5 768,584 + +0.5 768,584 + +0.2 768,584 + +0.2 768,585 - -0.8 768,585 - -1.1 768,586 + -2.2 768,587 - -1.5 768,587 - -0.3 768,587 - -1.1 768,587 - +6.5 768,604 + +0.2 768,615 + +0.1 768,641 + +0.0 768,642 - -1.8 768,642 - -0.5 768,646 - -0.7 768,658 - +1.5 768,671 + -0.3 768,672 - +0.7 768,700 + +1.0 768,700 + -1.0 768,700 + -0.9 768,700 + -1.7 768,700 + -1.0 768,774 - -0.7 769,024 + DDA3937_RS03495 0.31 -1.7 769,024 + DDA3937_RS03495 0.31 +0.1 769,024 + DDA3937_RS03495 0.31 -1.3 769,024 + DDA3937_RS03495 0.31 -0.8 769,024 + DDA3937_RS03495 0.31 -1.5 769,025 - DDA3937_RS03495 0.31 +0.3 769,025 - DDA3937_RS03495 0.31 -1.1 769,026 + DDA3937_RS03495 0.31 +0.1 769,315 + DDA3937_RS03495 0.56 -1.7 769,316 - DDA3937_RS03495 0.56 -0.3 769,316 - DDA3937_RS03495 0.56 -1.9 769,316 - DDA3937_RS03495 0.56 +0.1 769,776 + -0.5 769,776 + -1.6 769,776 + -0.6 769,776 + -1.7 769,816 + -1.3 769,858 - -0.5 769,873 + -1.2 769,874 - +0.4 769,921 + -1.9 769,921 + -2.3 769,921 + -2.7 769,921 + -0.4 769,922 - -0.2 769,922 - -0.5 769,922 - -0.7 769,944 - +0.1 769,961 + -0.4 769,961 + +0.4 769,961 + +0.3 769,961 + +0.1 769,962 - -1.3 769,962 - -1.1 769,992 + +0.2 769,992 + -0.7 769,993 - -0.7 769,993 - +0.1 770,117 + DDA3937_RS03500 0.11 -0.4 770,117 + DDA3937_RS03500 0.11 +0.2 770,118 - DDA3937_RS03500 0.11 -0.3 770,131 + DDA3937_RS03500 0.12 +0.1 770,132 - DDA3937_RS03500 0.12 -0.3 770,178 - DDA3937_RS03500 0.14 -0.4 770,430 + DDA3937_RS03500 0.30 +1.2 770,445 + DDA3937_RS03500 0.31 -0.0 770,445 + DDA3937_RS03500 0.31 -0.7 770,445 + DDA3937_RS03500 0.31 -0.3 770,445 + DDA3937_RS03500 0.31 -0.1 770,446 - DDA3937_RS03500 0.31 +0.0 770,446 - DDA3937_RS03500 0.31 -0.1 770,446 - DDA3937_RS03500 0.31 -1.0 770,452 + DDA3937_RS03500 0.31 -1.2 770,452 + DDA3937_RS03500 0.31 -0.4 770,764 - DDA3937_RS03500 0.51 -0.8 770,772 + DDA3937_RS03500 0.51 -1.8 770,812 + DDA3937_RS03500 0.54 -0.1 770,812 + DDA3937_RS03500 0.54 -0.1 770,812 + DDA3937_RS03500 0.54 +0.3 770,813 - DDA3937_RS03500 0.54 -1.4 770,815 + DDA3937_RS03500 0.54 +0.8 770,815 + DDA3937_RS03500 0.54 +1.5 770,815 + DDA3937_RS03500 0.54 +0.5 770,816 - DDA3937_RS03500 0.54 -0.7 770,816 - DDA3937_RS03500 0.54 +0.5 770,816 - DDA3937_RS03500 0.54 -0.1
Or see this region's nucleotide sequence