Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02235

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02225 and DDA3937_RS02230 are separated by 46 nucleotidesDDA3937_RS02230 and DDA3937_RS02235 are separated by 9 nucleotidesDDA3937_RS02235 and DDA3937_RS02240 are separated by 101 nucleotides DDA3937_RS02225: DDA3937_RS02225 - ABC transporter substrate-binding protein, at 492,891 to 494,423 _RS02225 DDA3937_RS02230: DDA3937_RS02230 - ABC transporter permease, at 494,470 to 495,387 _RS02230 DDA3937_RS02235: DDA3937_RS02235 - ABC transporter permease, at 495,397 to 496,323 _RS02235 DDA3937_RS02240: DDA3937_RS02240 - ATP-binding cassette domain-containing protein, at 496,425 to 497,399 _RS02240 Position (kb) 495 496 497Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 494.421 kb on + strandat 494.421 kb on + strandat 494.422 kb on - strandat 494.457 kb on - strandat 494.469 kb on + strandat 494.470 kb on - strandat 494.479 kb on + strandat 494.480 kb on - strandat 494.495 kb on + strandat 494.521 kb on - strandat 494.842 kb on - strand, within DDA3937_RS02230at 495.014 kb on - strand, within DDA3937_RS02230at 495.014 kb on - strand, within DDA3937_RS02230at 495.014 kb on - strand, within DDA3937_RS02230at 495.077 kb on - strand, within DDA3937_RS02230at 495.114 kb on + strand, within DDA3937_RS02230at 495.115 kb on - strand, within DDA3937_RS02230at 495.115 kb on - strand, within DDA3937_RS02230at 495.319 kb on + strandat 495.320 kb on - strandat 495.385 kb on + strandat 495.385 kb on + strandat 495.386 kb on - strandat 495.546 kb on + strand, within DDA3937_RS02235at 495.546 kb on + strand, within DDA3937_RS02235at 495.546 kb on + strand, within DDA3937_RS02235at 495.547 kb on - strand, within DDA3937_RS02235at 495.547 kb on - strand, within DDA3937_RS02235at 495.547 kb on - strand, within DDA3937_RS02235at 495.547 kb on - strand, within DDA3937_RS02235at 495.547 kb on - strand, within DDA3937_RS02235at 495.547 kb on - strandat 495.547 kb on - strand, within DDA3937_RS02235at 495.547 kb on - strand, within DDA3937_RS02235at 495.549 kb on - strand, within DDA3937_RS02235at 495.549 kb on - strand, within DDA3937_RS02235at 495.549 kb on - strand, within DDA3937_RS02235at 495.549 kb on - strand, within DDA3937_RS02235at 495.549 kb on - strand, within DDA3937_RS02235at 495.549 kb on - strand, within DDA3937_RS02235at 495.592 kb on + strand, within DDA3937_RS02235at 495.689 kb on - strand, within DDA3937_RS02235at 495.793 kb on + strand, within DDA3937_RS02235at 495.826 kb on + strand, within DDA3937_RS02235at 495.827 kb on - strand, within DDA3937_RS02235at 495.827 kb on - strand, within DDA3937_RS02235at 495.827 kb on - strand, within DDA3937_RS02235at 495.827 kb on - strand, within DDA3937_RS02235at 495.827 kb on - strand, within DDA3937_RS02235at 495.827 kb on - strand, within DDA3937_RS02235at 496.201 kb on + strand, within DDA3937_RS02235at 496.201 kb on + strand, within DDA3937_RS02235at 496.201 kb on + strand, within DDA3937_RS02235at 496.201 kb on + strand, within DDA3937_RS02235at 496.201 kb on + strand, within DDA3937_RS02235at 496.201 kb on + strand, within DDA3937_RS02235at 496.201 kb on + strandat 496.201 kb on + strand, within DDA3937_RS02235at 496.201 kb on + strand, within DDA3937_RS02235at 496.201 kb on + strand, within DDA3937_RS02235at 496.202 kb on - strand, within DDA3937_RS02235at 496.202 kb on - strand, within DDA3937_RS02235at 496.202 kb on - strand, within DDA3937_RS02235at 496.331 kb on - strandat 496.331 kb on - strandat 496.349 kb on + strandat 496.349 kb on + strandat 496.350 kb on - strandat 496.350 kb on - strandat 496.350 kb on - strandat 496.350 kb on - strandat 496.355 kb on + strandat 496.355 kb on + strandat 496.355 kb on + strandat 496.355 kb on + strandat 496.355 kb on + strandat 496.355 kb on + strandat 496.355 kb on + strandat 496.356 kb on - strandat 496.356 kb on - strandat 496.356 kb on - strandat 496.356 kb on - strandat 496.356 kb on - strandat 496.356 kb on - strandat 496.356 kb on - strandat 496.356 kb on - strandat 496.371 kb on - strandat 496.815 kb on + strand, within DDA3937_RS02240at 496.815 kb on + strand, within DDA3937_RS02240at 496.815 kb on + strand, within DDA3937_RS02240at 497.014 kb on + strand, within DDA3937_RS02240at 497.014 kb on + strand, within DDA3937_RS02240at 497.015 kb on - strand, within DDA3937_RS02240at 497.015 kb on - strand, within DDA3937_RS02240at 497.015 kb on - strand, within DDA3937_RS02240at 497.015 kb on - strand, within DDA3937_RS02240at 497.100 kb on + strand, within DDA3937_RS02240at 497.100 kb on + strand, within DDA3937_RS02240at 497.100 kb on + strand, within DDA3937_RS02240at 497.101 kb on - strand, within DDA3937_RS02240at 497.101 kb on - strand, within DDA3937_RS02240at 497.164 kb on - strand, within DDA3937_RS02240at 497.164 kb on - strand, within DDA3937_RS02240at 497.164 kb on - strand, within DDA3937_RS02240at 497.164 kb on - strand, within DDA3937_RS02240

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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494,421 + +0.6
494,421 + -0.4
494,422 - -0.6
494,457 - +0.0
494,469 + -0.8
494,470 - -0.6
494,479 + -1.0
494,480 - -0.4
494,495 + +1.1
494,521 - -0.7
494,842 - DDA3937_RS02230 0.41 -0.8
495,014 - DDA3937_RS02230 0.59 -1.1
495,014 - DDA3937_RS02230 0.59 +1.6
495,014 - DDA3937_RS02230 0.59 -1.2
495,077 - DDA3937_RS02230 0.66 -0.5
495,114 + DDA3937_RS02230 0.70 -0.3
495,115 - DDA3937_RS02230 0.70 +0.2
495,115 - DDA3937_RS02230 0.70 +0.6
495,319 + -0.4
495,320 - -1.7
495,385 + -0.4
495,385 + -0.0
495,386 - -0.8
495,546 + DDA3937_RS02235 0.16 -0.3
495,546 + DDA3937_RS02235 0.16 -0.4
495,546 + DDA3937_RS02235 0.16 +0.3
495,547 - DDA3937_RS02235 0.16 -0.8
495,547 - DDA3937_RS02235 0.16 +0.7
495,547 - DDA3937_RS02235 0.16 +0.5
495,547 - DDA3937_RS02235 0.16 +1.4
495,547 - DDA3937_RS02235 0.16 -0.3
495,547 - -0.4
495,547 - DDA3937_RS02235 0.16 +1.9
495,547 - DDA3937_RS02235 0.16 -0.8
495,549 - DDA3937_RS02235 0.16 +1.2
495,549 - DDA3937_RS02235 0.16 +0.2
495,549 - DDA3937_RS02235 0.16 +3.3
495,549 - DDA3937_RS02235 0.16 -1.2
495,549 - DDA3937_RS02235 0.16 -0.0
495,549 - DDA3937_RS02235 0.16 +0.7
495,592 + DDA3937_RS02235 0.21 +0.6
495,689 - DDA3937_RS02235 0.31 +5.4
495,793 + DDA3937_RS02235 0.43 +1.4
495,826 + DDA3937_RS02235 0.46 -0.2
495,827 - DDA3937_RS02235 0.46 +0.3
495,827 - DDA3937_RS02235 0.46 -1.3
495,827 - DDA3937_RS02235 0.46 +0.4
495,827 - DDA3937_RS02235 0.46 -2.1
495,827 - DDA3937_RS02235 0.46 -0.0
495,827 - DDA3937_RS02235 0.46 +0.3
496,201 + DDA3937_RS02235 0.87 -2.0
496,201 + DDA3937_RS02235 0.87 -0.8
496,201 + DDA3937_RS02235 0.87 +0.2
496,201 + DDA3937_RS02235 0.87 -0.8
496,201 + DDA3937_RS02235 0.87 +0.6
496,201 + DDA3937_RS02235 0.87 +0.2
496,201 + -1.0
496,201 + DDA3937_RS02235 0.87 -0.5
496,201 + DDA3937_RS02235 0.87 -1.2
496,201 + DDA3937_RS02235 0.87 +1.6
496,202 - DDA3937_RS02235 0.87 -2.1
496,202 - DDA3937_RS02235 0.87 +0.0
496,202 - DDA3937_RS02235 0.87 -0.2
496,331 - -0.6
496,331 - -1.0
496,349 + +0.9
496,349 + -0.4
496,350 - -0.1
496,350 - -0.7
496,350 - -0.8
496,350 - +0.0
496,355 + -1.0
496,355 + +0.3
496,355 + -1.3
496,355 + -0.5
496,355 + +0.5
496,355 + -1.1
496,355 + -0.2
496,356 - +0.4
496,356 - -0.9
496,356 - +1.3
496,356 - -1.6
496,356 - -0.2
496,356 - +2.0
496,356 - +0.0
496,356 - +0.8
496,371 - +0.9
496,815 + DDA3937_RS02240 0.40 +1.1
496,815 + DDA3937_RS02240 0.40 -0.6
496,815 + DDA3937_RS02240 0.40 +1.1
497,014 + DDA3937_RS02240 0.60 -0.6
497,014 + DDA3937_RS02240 0.60 +1.8
497,015 - DDA3937_RS02240 0.61 -0.6
497,015 - DDA3937_RS02240 0.61 +0.2
497,015 - DDA3937_RS02240 0.61 -1.8
497,015 - DDA3937_RS02240 0.61 +0.4
497,100 + DDA3937_RS02240 0.69 -0.5
497,100 + DDA3937_RS02240 0.69 +1.9
497,100 + DDA3937_RS02240 0.69 -2.6
497,101 - DDA3937_RS02240 0.69 -0.8
497,101 - DDA3937_RS02240 0.69 -0.4
497,164 - DDA3937_RS02240 0.76 -1.4
497,164 - DDA3937_RS02240 0.76 +0.1
497,164 - DDA3937_RS02240 0.76 +0.6
497,164 - DDA3937_RS02240 0.76 -1.8

Or see this region's nucleotide sequence