Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01350 and DDA3937_RS01355 are separated by 400 nucleotides DDA3937_RS01355 and DDA3937_RS01360 overlap by 4 nucleotides
DDA3937_RS01350: DDA3937_RS01350 - DNA primase, at 299,906 to 301,675
_RS01350
DDA3937_RS01355: DDA3937_RS01355 - hypothetical protein, at 302,076 to 302,255
_RS01355
DDA3937_RS01360: DDA3937_RS01360 - Clp protease ClpP, at 302,252 to 304,177
_RS01360
Position (kb) 302
303 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 301.103 kb on - strand, within DDA3937_RS01350 at 301.198 kb on + strand, within DDA3937_RS01350 at 301.198 kb on + strand, within DDA3937_RS01350 at 301.198 kb on + strand, within DDA3937_RS01350 at 301.199 kb on - strand, within DDA3937_RS01350 at 301.215 kb on + strand, within DDA3937_RS01350 at 301.234 kb on - strand, within DDA3937_RS01350 at 301.251 kb on + strand, within DDA3937_RS01350 at 301.325 kb on - strand, within DDA3937_RS01350 at 301.327 kb on + strand, within DDA3937_RS01350 at 301.327 kb on + strand, within DDA3937_RS01350 at 301.328 kb on - strand, within DDA3937_RS01350 at 301.439 kb on + strand, within DDA3937_RS01350 at 301.439 kb on + strand, within DDA3937_RS01350 at 301.440 kb on - strand at 301.446 kb on - strand, within DDA3937_RS01350 at 301.454 kb on + strand, within DDA3937_RS01350 at 301.455 kb on - strand, within DDA3937_RS01350 at 301.455 kb on - strand, within DDA3937_RS01350 at 301.455 kb on - strand, within DDA3937_RS01350 at 301.455 kb on - strand, within DDA3937_RS01350 at 301.455 kb on - strand, within DDA3937_RS01350 at 301.463 kb on + strand, within DDA3937_RS01350 at 301.463 kb on + strand, within DDA3937_RS01350 at 301.463 kb on + strand, within DDA3937_RS01350 at 301.463 kb on + strand, within DDA3937_RS01350 at 301.463 kb on + strand, within DDA3937_RS01350 at 301.463 kb on + strand at 301.463 kb on + strand, within DDA3937_RS01350 at 301.463 kb on + strand, within DDA3937_RS01350 at 301.463 kb on + strand, within DDA3937_RS01350 at 301.463 kb on + strand, within DDA3937_RS01350 at 301.463 kb on + strand, within DDA3937_RS01350 at 301.463 kb on + strand, within DDA3937_RS01350 at 301.464 kb on - strand, within DDA3937_RS01350 at 301.464 kb on - strand, within DDA3937_RS01350 at 301.464 kb on - strand, within DDA3937_RS01350 at 301.464 kb on - strand, within DDA3937_RS01350 at 301.464 kb on - strand, within DDA3937_RS01350 at 301.465 kb on + strand, within DDA3937_RS01350 at 301.465 kb on + strand, within DDA3937_RS01350 at 301.465 kb on + strand, within DDA3937_RS01350 at 301.465 kb on + strand, within DDA3937_RS01350 at 301.465 kb on + strand, within DDA3937_RS01350 at 301.465 kb on + strand, within DDA3937_RS01350 at 301.466 kb on - strand, within DDA3937_RS01350 at 301.466 kb on - strand, within DDA3937_RS01350 at 301.466 kb on - strand, within DDA3937_RS01350 at 301.466 kb on - strand, within DDA3937_RS01350 at 301.466 kb on - strand, within DDA3937_RS01350 at 301.520 kb on - strand at 301.541 kb on + strand at 301.554 kb on - strand at 301.554 kb on - strand at 301.564 kb on + strand at 301.565 kb on - strand at 301.581 kb on + strand at 301.582 kb on - strand at 301.658 kb on - strand at 301.680 kb on + strand at 301.682 kb on + strand at 301.682 kb on + strand at 301.682 kb on + strand at 301.682 kb on + strand at 301.683 kb on - strand at 301.734 kb on + strand at 301.758 kb on + strand at 301.834 kb on + strand at 301.835 kb on - strand at 301.837 kb on + strand at 301.837 kb on + strand at 301.838 kb on - strand at 301.838 kb on - strand at 301.848 kb on + strand at 301.895 kb on + strand at 301.929 kb on + strand at 301.980 kb on - strand at 301.986 kb on - strand at 302.045 kb on + strand at 302.056 kb on + strand at 302.056 kb on + strand at 302.056 kb on + strand at 302.057 kb on - strand at 302.058 kb on + strand at 302.104 kb on + strand at 302.104 kb on + strand, within DDA3937_RS01355 at 302.105 kb on - strand, within DDA3937_RS01355 at 302.105 kb on - strand, within DDA3937_RS01355 at 302.105 kb on - strand, within DDA3937_RS01355 at 302.105 kb on - strand, within DDA3937_RS01355 at 302.108 kb on + strand, within DDA3937_RS01355 at 302.108 kb on + strand, within DDA3937_RS01355 at 302.108 kb on + strand, within DDA3937_RS01355 at 302.109 kb on - strand, within DDA3937_RS01355 at 302.109 kb on - strand, within DDA3937_RS01355 at 302.109 kb on - strand, within DDA3937_RS01355 at 302.109 kb on - strand, within DDA3937_RS01355 at 302.142 kb on + strand, within DDA3937_RS01355 at 302.142 kb on + strand, within DDA3937_RS01355 at 302.143 kb on - strand, within DDA3937_RS01355 at 302.143 kb on - strand, within DDA3937_RS01355 at 302.186 kb on + strand, within DDA3937_RS01355 at 302.186 kb on + strand, within DDA3937_RS01355 at 302.186 kb on + strand, within DDA3937_RS01355 at 302.186 kb on + strand, within DDA3937_RS01355 at 302.187 kb on - strand, within DDA3937_RS01355 at 302.187 kb on - strand, within DDA3937_RS01355 at 302.187 kb on - strand, within DDA3937_RS01355 at 302.187 kb on - strand, within DDA3937_RS01355 at 302.191 kb on + strand, within DDA3937_RS01355 at 302.191 kb on + strand, within DDA3937_RS01355 at 302.192 kb on - strand, within DDA3937_RS01355 at 302.216 kb on + strand, within DDA3937_RS01355 at 302.216 kb on + strand, within DDA3937_RS01355 at 302.217 kb on - strand, within DDA3937_RS01355 at 302.221 kb on - strand, within DDA3937_RS01355 at 302.221 kb on - strand, within DDA3937_RS01355 at 302.221 kb on - strand, within DDA3937_RS01355 at 302.252 kb on - strand at 302.264 kb on + strand at 302.265 kb on - strand at 302.265 kb on - strand at 302.312 kb on + strand at 302.313 kb on - strand at 302.336 kb on - strand at 302.338 kb on + strand at 302.338 kb on + strand at 302.338 kb on + strand at 302.338 kb on + strand at 302.338 kb on + strand at 302.338 kb on + strand at 302.338 kb on + strand at 302.338 kb on + strand at 302.339 kb on - strand at 302.381 kb on - strand at 302.397 kb on + strand at 302.398 kb on - strand at 302.440 kb on + strand at 302.441 kb on - strand at 302.441 kb on - strand at 302.441 kb on - strand at 302.441 kb on - strand at 302.444 kb on + strand at 302.444 kb on + strand at 302.445 kb on - strand, within DDA3937_RS01360 at 302.445 kb on - strand, within DDA3937_RS01360 at 302.507 kb on - strand, within DDA3937_RS01360 at 302.539 kb on + strand, within DDA3937_RS01360 at 302.612 kb on - strand, within DDA3937_RS01360 at 302.612 kb on - strand, within DDA3937_RS01360 at 302.612 kb on - strand, within DDA3937_RS01360 at 302.612 kb on - strand, within DDA3937_RS01360 at 302.667 kb on - strand, within DDA3937_RS01360 at 302.674 kb on + strand, within DDA3937_RS01360 at 302.675 kb on - strand, within DDA3937_RS01360 at 302.772 kb on + strand, within DDA3937_RS01360 at 302.772 kb on + strand at 302.773 kb on - strand, within DDA3937_RS01360 at 302.773 kb on - strand, within DDA3937_RS01360 at 302.773 kb on - strand, within DDA3937_RS01360 at 302.773 kb on - strand, within DDA3937_RS01360 at 302.833 kb on + strand, within DDA3937_RS01360 at 302.833 kb on + strand, within DDA3937_RS01360 at 302.833 kb on + strand, within DDA3937_RS01360 at 302.833 kb on + strand, within DDA3937_RS01360 at 302.833 kb on + strand, within DDA3937_RS01360 at 302.833 kb on + strand, within DDA3937_RS01360 at 302.833 kb on + strand, within DDA3937_RS01360 at 302.834 kb on - strand, within DDA3937_RS01360 at 302.834 kb on - strand, within DDA3937_RS01360 at 302.834 kb on - strand, within DDA3937_RS01360 at 302.834 kb on - strand, within DDA3937_RS01360 at 302.834 kb on - strand, within DDA3937_RS01360 at 302.834 kb on - strand, within DDA3937_RS01360 at 302.834 kb on - strand, within DDA3937_RS01360 at 302.849 kb on - strand, within DDA3937_RS01360 at 302.849 kb on - strand, within DDA3937_RS01360 at 302.870 kb on - strand, within DDA3937_RS01360 at 302.870 kb on - strand, within DDA3937_RS01360 at 302.917 kb on + strand, within DDA3937_RS01360 at 302.918 kb on - strand, within DDA3937_RS01360 at 302.918 kb on - strand at 302.921 kb on - strand, within DDA3937_RS01360 at 302.935 kb on + strand, within DDA3937_RS01360 at 302.948 kb on - strand, within DDA3937_RS01360 at 303.001 kb on + strand, within DDA3937_RS01360 at 303.001 kb on + strand, within DDA3937_RS01360 at 303.002 kb on - strand, within DDA3937_RS01360 at 303.002 kb on - strand, within DDA3937_RS01360 at 303.002 kb on - strand, within DDA3937_RS01360 at 303.031 kb on - strand, within DDA3937_RS01360 at 303.083 kb on - strand, within DDA3937_RS01360 at 303.086 kb on + strand, within DDA3937_RS01360 at 303.086 kb on + strand, within DDA3937_RS01360 at 303.086 kb on + strand, within DDA3937_RS01360 at 303.087 kb on - strand, within DDA3937_RS01360 at 303.090 kb on + strand, within DDA3937_RS01360 at 303.091 kb on - strand, within DDA3937_RS01360 at 303.094 kb on + strand, within DDA3937_RS01360 at 303.094 kb on + strand, within DDA3937_RS01360 at 303.094 kb on + strand, within DDA3937_RS01360 at 303.103 kb on + strand, within DDA3937_RS01360 at 303.103 kb on + strand, within DDA3937_RS01360 at 303.107 kb on - strand, within DDA3937_RS01360 at 303.176 kb on + strand, within DDA3937_RS01360 at 303.177 kb on - strand at 303.236 kb on - strand, within DDA3937_RS01360
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 301,103 - DDA3937_RS01350 0.68 -0.3 301,198 + DDA3937_RS01350 0.73 +0.1 301,198 + DDA3937_RS01350 0.73 +0.5 301,198 + DDA3937_RS01350 0.73 +1.1 301,199 - DDA3937_RS01350 0.73 -0.1 301,215 + DDA3937_RS01350 0.74 -1.3 301,234 - DDA3937_RS01350 0.75 -1.1 301,251 + DDA3937_RS01350 0.76 -0.7 301,325 - DDA3937_RS01350 0.80 -1.7 301,327 + DDA3937_RS01350 0.80 -1.0 301,327 + DDA3937_RS01350 0.80 -0.0 301,328 - DDA3937_RS01350 0.80 -0.7 301,439 + DDA3937_RS01350 0.87 -3.0 301,439 + DDA3937_RS01350 0.87 -1.3 301,440 - -0.7 301,446 - DDA3937_RS01350 0.87 -0.7 301,454 + DDA3937_RS01350 0.87 -0.7 301,455 - DDA3937_RS01350 0.88 +0.3 301,455 - DDA3937_RS01350 0.88 -0.6 301,455 - DDA3937_RS01350 0.88 -2.3 301,455 - DDA3937_RS01350 0.88 -0.6 301,455 - DDA3937_RS01350 0.88 +1.2 301,463 + DDA3937_RS01350 0.88 -1.6 301,463 + DDA3937_RS01350 0.88 -0.5 301,463 + DDA3937_RS01350 0.88 -1.1 301,463 + DDA3937_RS01350 0.88 +0.5 301,463 + DDA3937_RS01350 0.88 -0.1 301,463 + +2.7 301,463 + DDA3937_RS01350 0.88 -1.0 301,463 + DDA3937_RS01350 0.88 -3.0 301,463 + DDA3937_RS01350 0.88 -1.1 301,463 + DDA3937_RS01350 0.88 -0.4 301,463 + DDA3937_RS01350 0.88 -0.2 301,463 + DDA3937_RS01350 0.88 -0.9 301,464 - DDA3937_RS01350 0.88 +1.4 301,464 - DDA3937_RS01350 0.88 -2.8 301,464 - DDA3937_RS01350 0.88 -2.5 301,464 - DDA3937_RS01350 0.88 -1.4 301,464 - DDA3937_RS01350 0.88 +0.1 301,465 + DDA3937_RS01350 0.88 +0.5 301,465 + DDA3937_RS01350 0.88 +0.7 301,465 + DDA3937_RS01350 0.88 -0.7 301,465 + DDA3937_RS01350 0.88 +0.7 301,465 + DDA3937_RS01350 0.88 -0.3 301,465 + DDA3937_RS01350 0.88 -0.7 301,466 - DDA3937_RS01350 0.88 -0.7 301,466 - DDA3937_RS01350 0.88 -0.5 301,466 - DDA3937_RS01350 0.88 +0.1 301,466 - DDA3937_RS01350 0.88 +1.4 301,466 - DDA3937_RS01350 0.88 +1.7 301,520 - -1.7 301,541 + -1.5 301,554 - +0.1 301,554 - -0.3 301,564 + -0.1 301,565 - +0.7 301,581 + +0.8 301,582 - -1.2 301,658 - -1.0 301,680 + -1.5 301,682 + +0.7 301,682 + +0.2 301,682 + -0.7 301,682 + -0.1 301,683 - -0.2 301,734 + +0.6 301,758 + -1.1 301,834 + -0.9 301,835 - -0.2 301,837 + -1.1 301,837 + -0.4 301,838 - -1.0 301,838 - +2.2 301,848 + +0.3 301,895 + -1.5 301,929 + -0.3 301,980 - -0.8 301,986 - +0.3 302,045 + -0.2 302,056 + -0.6 302,056 + -0.6 302,056 + -0.3 302,057 - +1.1 302,058 + +0.1 302,104 + -0.3 302,104 + DDA3937_RS01355 0.16 +0.1 302,105 - DDA3937_RS01355 0.16 -0.1 302,105 - DDA3937_RS01355 0.16 +0.1 302,105 - DDA3937_RS01355 0.16 -1.0 302,105 - DDA3937_RS01355 0.16 +0.1 302,108 + DDA3937_RS01355 0.18 -0.7 302,108 + DDA3937_RS01355 0.18 -0.2 302,108 + DDA3937_RS01355 0.18 +0.4 302,109 - DDA3937_RS01355 0.18 -0.3 302,109 - DDA3937_RS01355 0.18 +2.2 302,109 - DDA3937_RS01355 0.18 +0.4 302,109 - DDA3937_RS01355 0.18 -0.7 302,142 + DDA3937_RS01355 0.37 +0.7 302,142 + DDA3937_RS01355 0.37 +1.7 302,143 - DDA3937_RS01355 0.37 -0.7 302,143 - DDA3937_RS01355 0.37 +0.7 302,186 + DDA3937_RS01355 0.61 -0.5 302,186 + DDA3937_RS01355 0.61 -0.1 302,186 + DDA3937_RS01355 0.61 -0.2 302,186 + DDA3937_RS01355 0.61 +0.1 302,187 - DDA3937_RS01355 0.62 -0.2 302,187 - DDA3937_RS01355 0.62 +1.2 302,187 - DDA3937_RS01355 0.62 -0.1 302,187 - DDA3937_RS01355 0.62 +0.2 302,191 + DDA3937_RS01355 0.64 -1.1 302,191 + DDA3937_RS01355 0.64 +0.8 302,192 - DDA3937_RS01355 0.64 -0.5 302,216 + DDA3937_RS01355 0.78 -0.5 302,216 + DDA3937_RS01355 0.78 +3.3 302,217 - DDA3937_RS01355 0.78 -0.3 302,221 - DDA3937_RS01355 0.81 -0.1 302,221 - DDA3937_RS01355 0.81 +0.2 302,221 - DDA3937_RS01355 0.81 +2.7 302,252 - -1.6 302,264 + -2.1 302,265 - +0.2 302,265 - -0.4 302,312 + +0.3 302,313 - -0.1 302,336 - -0.3 302,338 + -1.7 302,338 + -0.4 302,338 + -1.0 302,338 + +1.1 302,338 + -1.5 302,338 + +0.1 302,338 + -0.9 302,338 + -0.7 302,339 - +1.2 302,381 - +0.1 302,397 + +0.1 302,398 - -1.3 302,440 + -0.9 302,441 - -0.2 302,441 - -2.1 302,441 - +0.8 302,441 - +0.2 302,444 + +0.7 302,444 + -0.8 302,445 - DDA3937_RS01360 0.10 -0.6 302,445 - DDA3937_RS01360 0.10 +3.2 302,507 - DDA3937_RS01360 0.13 -1.1 302,539 + DDA3937_RS01360 0.15 +0.0 302,612 - DDA3937_RS01360 0.19 -0.5 302,612 - DDA3937_RS01360 0.19 +0.3 302,612 - DDA3937_RS01360 0.19 +0.3 302,612 - DDA3937_RS01360 0.19 +0.1 302,667 - DDA3937_RS01360 0.22 -1.4 302,674 + DDA3937_RS01360 0.22 -0.7 302,675 - DDA3937_RS01360 0.22 -1.1 302,772 + DDA3937_RS01360 0.27 -0.7 302,772 + +0.7 302,773 - DDA3937_RS01360 0.27 -1.3 302,773 - DDA3937_RS01360 0.27 -0.6 302,773 - DDA3937_RS01360 0.27 -1.3 302,773 - DDA3937_RS01360 0.27 -0.5 302,833 + DDA3937_RS01360 0.30 +1.5 302,833 + DDA3937_RS01360 0.30 +0.9 302,833 + DDA3937_RS01360 0.30 +1.4 302,833 + DDA3937_RS01360 0.30 +0.7 302,833 + DDA3937_RS01360 0.30 +0.8 302,833 + DDA3937_RS01360 0.30 +0.8 302,833 + DDA3937_RS01360 0.30 -0.8 302,834 - DDA3937_RS01360 0.30 -0.2 302,834 - DDA3937_RS01360 0.30 -1.6 302,834 - DDA3937_RS01360 0.30 +0.4 302,834 - DDA3937_RS01360 0.30 -0.7 302,834 - DDA3937_RS01360 0.30 -1.6 302,834 - DDA3937_RS01360 0.30 -0.2 302,834 - DDA3937_RS01360 0.30 -0.5 302,849 - DDA3937_RS01360 0.31 +2.0 302,849 - DDA3937_RS01360 0.31 +1.6 302,870 - DDA3937_RS01360 0.32 +0.2 302,870 - DDA3937_RS01360 0.32 -0.2 302,917 + DDA3937_RS01360 0.35 -0.6 302,918 - DDA3937_RS01360 0.35 +0.4 302,918 - +3.4 302,921 - DDA3937_RS01360 0.35 -1.3 302,935 + DDA3937_RS01360 0.35 -0.3 302,948 - DDA3937_RS01360 0.36 -1.9 303,001 + DDA3937_RS01360 0.39 -1.3 303,001 + DDA3937_RS01360 0.39 -1.9 303,002 - DDA3937_RS01360 0.39 -0.1 303,002 - DDA3937_RS01360 0.39 -0.6 303,002 - DDA3937_RS01360 0.39 +0.5 303,031 - DDA3937_RS01360 0.40 -0.8 303,083 - DDA3937_RS01360 0.43 -0.4 303,086 + DDA3937_RS01360 0.43 -0.4 303,086 + DDA3937_RS01360 0.43 -0.6 303,086 + DDA3937_RS01360 0.43 -0.0 303,087 - DDA3937_RS01360 0.43 -0.3 303,090 + DDA3937_RS01360 0.44 -0.7 303,091 - DDA3937_RS01360 0.44 -0.9 303,094 + DDA3937_RS01360 0.44 -1.3 303,094 + DDA3937_RS01360 0.44 -1.5 303,094 + DDA3937_RS01360 0.44 -0.7 303,103 + DDA3937_RS01360 0.44 -1.0 303,103 + DDA3937_RS01360 0.44 -0.7 303,107 - DDA3937_RS01360 0.44 +0.6 303,176 + DDA3937_RS01360 0.48 +1.3 303,177 - +3.0 303,236 - DDA3937_RS01360 0.51 -0.2
Or see this region's nucleotide sequence