Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00875

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS00865 and DDA3937_RS00870 are separated by 141 nucleotidesDDA3937_RS00870 and DDA3937_RS00875 are separated by 144 nucleotidesDDA3937_RS00875 and DDA3937_RS00880 are separated by 13 nucleotidesDDA3937_RS00880 and DDA3937_RS00885 are separated by 109 nucleotides DDA3937_RS00865: DDA3937_RS00865 - triose-phosphate isomerase, at 200,851 to 201,621 _RS00865 DDA3937_RS00870: DDA3937_RS00870 - YiiQ family protein, at 201,763 to 202,359 _RS00870 DDA3937_RS00875: DDA3937_RS00875 - DUF805 domain-containing protein, at 202,504 to 202,929 _RS00875 DDA3937_RS00880: DDA3937_RS00880 - ferredoxin--NADP(+) reductase, at 202,943 to 203,689 _RS00880 DDA3937_RS00885: DDA3937_RS00885 - class II fructose-bisphosphatase, at 203,799 to 204,809 _RS00885 Position (kb) 202 203Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 201.650 kb on - strandat 201.657 kb on - strandat 201.657 kb on - strandat 201.657 kb on - strandat 201.657 kb on - strandat 201.691 kb on + strandat 201.692 kb on - strandat 201.705 kb on + strandat 201.705 kb on + strandat 201.706 kb on - strandat 201.706 kb on - strandat 201.706 kb on - strandat 201.708 kb on + strandat 201.708 kb on + strandat 201.708 kb on + strandat 201.708 kb on + strandat 201.708 kb on + strandat 201.708 kb on + strandat 201.708 kb on + strandat 201.708 kb on + strandat 201.709 kb on - strandat 201.709 kb on - strandat 201.709 kb on - strandat 201.709 kb on - strandat 201.709 kb on - strandat 201.709 kb on - strandat 201.710 kb on + strandat 201.710 kb on + strandat 201.710 kb on + strandat 201.710 kb on + strandat 201.711 kb on - strandat 201.711 kb on - strandat 201.711 kb on - strandat 201.711 kb on - strandat 201.748 kb on + strandat 201.839 kb on + strand, within DDA3937_RS00870at 201.839 kb on + strand, within DDA3937_RS00870at 201.866 kb on + strand, within DDA3937_RS00870at 201.866 kb on + strand, within DDA3937_RS00870at 201.867 kb on - strand, within DDA3937_RS00870at 201.942 kb on + strand, within DDA3937_RS00870at 201.943 kb on - strand, within DDA3937_RS00870at 201.968 kb on + strand, within DDA3937_RS00870at 201.969 kb on - strand, within DDA3937_RS00870at 202.029 kb on + strand, within DDA3937_RS00870at 202.045 kb on + strand, within DDA3937_RS00870at 202.045 kb on + strand, within DDA3937_RS00870at 202.046 kb on - strand, within DDA3937_RS00870at 202.082 kb on + strand, within DDA3937_RS00870at 202.083 kb on - strand, within DDA3937_RS00870at 202.190 kb on + strand, within DDA3937_RS00870at 202.190 kb on + strand, within DDA3937_RS00870at 202.191 kb on - strand, within DDA3937_RS00870at 202.207 kb on + strand, within DDA3937_RS00870at 202.207 kb on + strand, within DDA3937_RS00870at 202.207 kb on + strand, within DDA3937_RS00870at 202.207 kb on + strand, within DDA3937_RS00870at 202.207 kb on + strand, within DDA3937_RS00870at 202.208 kb on - strand, within DDA3937_RS00870at 202.208 kb on - strand, within DDA3937_RS00870at 202.208 kb on - strand, within DDA3937_RS00870at 202.208 kb on - strand, within DDA3937_RS00870at 202.313 kb on - strandat 202.368 kb on + strandat 202.368 kb on + strandat 202.369 kb on - strandat 202.369 kb on - strandat 202.371 kb on + strandat 202.372 kb on - strandat 202.372 kb on - strandat 202.381 kb on + strandat 202.381 kb on + strandat 202.381 kb on + strandat 202.382 kb on - strandat 202.382 kb on - strandat 202.459 kb on + strandat 202.459 kb on + strandat 202.459 kb on + strandat 202.460 kb on - strandat 202.460 kb on - strandat 202.464 kb on + strandat 202.465 kb on - strandat 202.465 kb on - strandat 202.478 kb on - strandat 202.512 kb on - strandat 202.512 kb on - strandat 202.512 kb on - strandat 202.512 kb on - strandat 202.733 kb on + strand, within DDA3937_RS00875at 202.733 kb on + strand, within DDA3937_RS00875at 202.733 kb on + strand, within DDA3937_RS00875at 202.734 kb on - strand, within DDA3937_RS00875at 202.869 kb on + strand, within DDA3937_RS00875at 202.869 kb on + strand, within DDA3937_RS00875at 202.945 kb on - strandat 202.967 kb on - strandat 203.328 kb on + strandat 203.329 kb on - strand, within DDA3937_RS00880at 203.529 kb on + strand, within DDA3937_RS00880at 203.633 kb on + strandat 203.663 kb on - strandat 203.695 kb on + strandat 203.695 kb on + strandat 203.695 kb on + strandat 203.695 kb on + strandat 203.695 kb on + strandat 203.695 kb on + strandat 203.696 kb on - strandat 203.696 kb on - strandat 203.696 kb on - strandat 203.696 kb on - strandat 203.696 kb on - strandat 203.696 kb on - strandat 203.748 kb on + strandat 203.749 kb on - strandat 203.749 kb on - strandat 203.842 kb on + strandat 203.843 kb on - strandat 203.843 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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201,650 - -0.6
201,657 - +0.4
201,657 - -0.2
201,657 - -0.5
201,657 - +1.1
201,691 + -0.7
201,692 - -0.7
201,705 + -2.1
201,705 + -1.1
201,706 - -1.3
201,706 - -0.2
201,706 - +0.0
201,708 + -2.0
201,708 + -0.5
201,708 + -1.3
201,708 + -0.8
201,708 + -0.2
201,708 + -2.0
201,708 + -1.1
201,708 + -0.8
201,709 - -0.3
201,709 - +0.2
201,709 - -2.2
201,709 - +4.6
201,709 - -1.5
201,709 - -0.9
201,710 + -1.0
201,710 + +3.2
201,710 + -0.4
201,710 + -0.6
201,711 - -0.2
201,711 - +6.2
201,711 - -1.7
201,711 - +0.4
201,748 + -1.5
201,839 + DDA3937_RS00870 0.13 -3.4
201,839 + DDA3937_RS00870 0.13 -0.1
201,866 + DDA3937_RS00870 0.17 -0.1
201,866 + DDA3937_RS00870 0.17 +0.7
201,867 - DDA3937_RS00870 0.17 +0.7
201,942 + DDA3937_RS00870 0.30 -0.1
201,943 - DDA3937_RS00870 0.30 +2.7
201,968 + DDA3937_RS00870 0.34 -0.4
201,969 - DDA3937_RS00870 0.35 -0.3
202,029 + DDA3937_RS00870 0.45 -0.1
202,045 + DDA3937_RS00870 0.47 -0.5
202,045 + DDA3937_RS00870 0.47 +0.3
202,046 - DDA3937_RS00870 0.47 -0.8
202,082 + DDA3937_RS00870 0.53 -1.5
202,083 - DDA3937_RS00870 0.54 -0.2
202,190 + DDA3937_RS00870 0.72 -0.9
202,190 + DDA3937_RS00870 0.72 -0.2
202,191 - DDA3937_RS00870 0.72 +0.2
202,207 + DDA3937_RS00870 0.74 +3.1
202,207 + DDA3937_RS00870 0.74 -0.3
202,207 + DDA3937_RS00870 0.74 +3.1
202,207 + DDA3937_RS00870 0.74 +1.0
202,207 + DDA3937_RS00870 0.74 +1.4
202,208 - DDA3937_RS00870 0.75 +0.9
202,208 - DDA3937_RS00870 0.75 -0.1
202,208 - DDA3937_RS00870 0.75 +0.4
202,208 - DDA3937_RS00870 0.75 -2.9
202,313 - -1.3
202,368 + -0.1
202,368 + -1.8
202,369 - +0.1
202,369 - +1.1
202,371 + -1.3
202,372 - -1.1
202,372 - +3.2
202,381 + -1.2
202,381 + -1.0
202,381 + -0.4
202,382 - +2.2
202,382 - +1.9
202,459 + -2.3
202,459 + -0.7
202,459 + +3.7
202,460 - +0.4
202,460 - -0.2
202,464 + -2.4
202,465 - +1.7
202,465 - +0.2
202,478 - -2.0
202,512 - -0.6
202,512 - -1.0
202,512 - +0.9
202,512 - -2.1
202,733 + DDA3937_RS00875 0.54 -1.8
202,733 + DDA3937_RS00875 0.54 -0.7
202,733 + DDA3937_RS00875 0.54 -0.9
202,734 - DDA3937_RS00875 0.54 -1.8
202,869 + DDA3937_RS00875 0.86 -1.6
202,869 + DDA3937_RS00875 0.86 -0.8
202,945 - -0.8
202,967 - -0.7
203,328 + -0.7
203,329 - DDA3937_RS00880 0.52 -0.3
203,529 + DDA3937_RS00880 0.78 +0.2
203,633 + -0.7
203,663 - -1.5
203,695 + +0.1
203,695 + +0.7
203,695 + -0.3
203,695 + +0.7
203,695 + -1.8
203,695 + +1.3
203,696 - -2.0
203,696 - -0.8
203,696 - -0.7
203,696 - -2.1
203,696 - -0.1
203,696 - +0.3
203,748 + -1.5
203,749 - -0.4
203,749 - +0.5
203,842 + +0.0
203,843 - +0.2
203,843 - -0.9

Or see this region's nucleotide sequence