Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00210

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
50,063	+		DDA3937_RS00200	0.82	-0.1
50,063	+		DDA3937_RS00200	0.82	+1.7
50,063	+		DDA3937_RS00200	0.82	-0.4
50,064	-		DDA3937_RS00200	0.82	-0.3
50,064	-		DDA3937_RS00200	0.82	+0.5
50,064	-		DDA3937_RS00200	0.82	+0.6
50,064	-		DDA3937_RS00200	0.82	+1.8
50,064	-				+1.7
50,099	+		DDA3937_RS00200	0.84	+0.4
50,099	+		DDA3937_RS00200	0.84	+0.5
50,099	+		DDA3937_RS00200	0.84	+3.9
50,099	+		DDA3937_RS00200	0.84	+0.5
50,099	+		DDA3937_RS00200	0.84	+0.1
50,100	-		DDA3937_RS00200	0.85	+0.1
50,100	-		DDA3937_RS00200	0.85	+1.2
50,158	+		DDA3937_RS00200	0.88	-1.5
50,158	+		DDA3937_RS00200	0.88	+0.7
50,180	+		DDA3937_RS00200	0.89	-2.0
50,180	+		DDA3937_RS00200	0.89	-0.3
50,180	+		DDA3937_RS00200	0.89	-0.6
50,180	+		DDA3937_RS00200	0.89	-0.3
50,181	-				+0.7
50,181	-		DDA3937_RS00200	0.89	+1.9
50,181	-		DDA3937_RS00200	0.89	+0.7
50,181	-		DDA3937_RS00200	0.89	-0.6
50,181	-		DDA3937_RS00200	0.89	+0.2
50,198	-				-0.1
50,296	+				+0.7
50,296	+				-0.5
50,296	+				-0.0
50,296	+				+2.5
50,296	+				+1.2
50,296	+				+0.2
50,296	+				-0.6
50,297	-				+1.0
50,297	-				-1.1
50,297	-				+0.3
50,297	-				-1.0
50,297	-				-0.2
50,297	-				+0.8
50,297	-				+0.3
50,297	-				-0.6
50,297	-				+5.7
50,297	-				+0.9
50,297	-				-0.5
50,329	+				-0.7
50,341	+				-0.7
50,341	+				+0.1
50,373	+				-0.3
50,373	+				-0.3
50,374	-				-0.1
50,374	-				-1.5
50,374	-				-0.9
50,479	+				-0.1
50,479	+				-0.4
50,479	+				-1.1
50,479	+				-1.9
50,480	-				-0.2
50,480	-				-1.1
50,498	+				-1.5
50,499	-				-0.2
50,499	-				-0.3
50,741	+				-1.0
50,742	-				+0.6
50,913	+				+2.1
50,926	-				-1.0
50,930	+				+1.9
50,930	+				-0.6
50,931	-				+0.8
51,024	+				-0.2
51,024	+				+1.1
51,024	+				+1.4
51,025	-				+0.7
51,025	-				-0.1
51,123	+		DDA3937_RS00210	0.16	+3.5
51,124	-		DDA3937_RS00210	0.17	-0.1
51,124	-		DDA3937_RS00210	0.17	-1.1
51,124	-		DDA3937_RS00210	0.17	-1.1
51,124	-		DDA3937_RS00210	0.17	+0.1
51,124	-		DDA3937_RS00210	0.17	-0.8
51,124	-		DDA3937_RS00210	0.17	-1.8
51,190	+		DDA3937_RS00210	0.27	-1.1
51,225	+		DDA3937_RS00210	0.33	-1.2
51,226	-		DDA3937_RS00210	0.33	+0.0
51,279	+		DDA3937_RS00210	0.41	-0.6
51,279	+		DDA3937_RS00210	0.41	-0.4
51,279	+		DDA3937_RS00210	0.41	+0.5
51,282	+		DDA3937_RS00210	0.42	+1.0
51,282	+				+0.7
51,282	+		DDA3937_RS00210	0.42	-0.0
51,282	+		DDA3937_RS00210	0.42	-0.6
51,282	+		DDA3937_RS00210	0.42	-1.4
51,282	+		DDA3937_RS00210	0.42	-1.7
51,282	+		DDA3937_RS00210	0.42	-0.8
51,283	-		DDA3937_RS00210	0.42	-0.0
51,283	-		DDA3937_RS00210	0.42	-0.0
51,283	-		DDA3937_RS00210	0.42	-0.4
51,283	-		DDA3937_RS00210	0.42	-2.2
51,303	+		DDA3937_RS00210	0.45	-0.8
51,304	-		DDA3937_RS00210	0.45	+0.2
51,304	-		DDA3937_RS00210	0.45	-0.8
51,304	-		DDA3937_RS00210	0.45	-1.3
51,304	-		DDA3937_RS00210	0.45	+0.4
51,355	+		DDA3937_RS00210	0.53	-1.5
51,356	-		DDA3937_RS00210	0.54	+0.2
51,356	-		DDA3937_RS00210	0.54	+0.7
51,356	-		DDA3937_RS00210	0.54	-0.9
51,537	+		DDA3937_RS00210	0.82	-1.7
51,538	-		DDA3937_RS00210	0.83	+1.0
51,578	-		DDA3937_RS00210	0.89	-0.0
51,578	-		DDA3937_RS00210	0.89	-1.5
51,578	-		DDA3937_RS00210	0.89	-0.8
51,600	-				-0.6
51,623	+				-2.3
51,623	+				-0.3
51,623	+				+1.1
51,623	+				-1.6
51,623	+				-1.5
51,624	-				+3.3
51,658	+				-1.5
51,658	+				-1.1
51,659	-				+1.4
51,659	-				+0.5
51,659	-				+0.9
51,664	+				-1.1
51,664	+				+0.7
51,664	+				-0.7
51,664	+				+1.7
51,664	+				-0.5
51,664	+				-0.8
51,664	+				+0.1
51,664	+				-0.1
51,664	+				-0.1
51,664	+				-0.7
51,664	+				-0.5
51,664	+				-1.3
51,664	+				-1.1
51,664	+				-0.7
51,664	+				-0.5
51,664	+				+0.2
51,664	+				-1.1
51,664	+				-0.8
51,665	-				-0.3
51,665	-				+1.2
51,665	-				+0.8
51,665	-				+0.4
51,665	-				-0.4
51,665	-				-0.3
51,665	-				-2.2
51,665	-				+0.7
51,665	-				-0.9
51,665	-				+0.3
51,665	-				-0.6
51,665	-				-0.8
51,665	-				-0.1
51,665	-				-0.5
51,665	-				-0.1
51,665	-				-1.4
51,665	-				-1.3
51,665	-				+1.3
51,665	-				+0.7
51,665	-				+1.2
51,665	-				+0.2
51,665	-				-1.4
51,665	-				-0.4
51,665	-				+0.4
51,666	+				-0.0
51,667	-				-0.5
51,667	-				-0.8
51,667	-				-0.3
51,667	-				+0.3
51,667	-				-1.8
51,676	+				-1.1
51,676	+				-0.1
51,676	+				+0.3
51,676	+				-0.4
51,676	+				+1.3
51,677	-				+0.8
51,677	-				-0.1
51,677	-				-0.9
51,677	-				+1.0
51,682	+				+0.4
51,682	+				+0.2
51,682	+				-0.2
51,682	+				+2.3
51,682	+				+2.2
51,683	-				+0.4
51,683	-				-0.5
51,713	-				-1.2
51,770	+				-2.5
51,771	-				-0.6
51,781	-				-0.8
51,834	+		DDA3937_RS00215	0.11	-0.6
51,835	-		DDA3937_RS00215	0.11	+0.1
51,835	-		DDA3937_RS00215	0.11	-0.5
51,835	-		DDA3937_RS00215	0.11	+0.3
51,847	+		DDA3937_RS00215	0.12	-0.3
51,905	-		DDA3937_RS00215	0.20	-0.4
51,941	+		DDA3937_RS00215	0.24	-0.8
52,018	+		DDA3937_RS00215	0.34	+1.2
52,018	+		DDA3937_RS00215	0.34	-0.4
52,018	+		DDA3937_RS00215	0.34	-0.1
52,018	+		DDA3937_RS00215	0.34	+1.1
52,019	-		DDA3937_RS00215	0.34	-0.5
52,023	+		DDA3937_RS00215	0.35	+1.2
52,094	+		DDA3937_RS00215	0.44	-0.4
52,095	-		DDA3937_RS00215	0.44	+0.7
52,104	-		DDA3937_RS00215	0.45	-0.5
52,201	+		DDA3937_RS00215	0.57	-1.3
52,202	-		DDA3937_RS00215	0.57	-1.3
52,279	+		DDA3937_RS00215	0.67	-1.8
52,279	+				-1.1
52,279	+		DDA3937_RS00215	0.67	+0.8
52,279	+		DDA3937_RS00215	0.67	-0.6
52,279	+		DDA3937_RS00215	0.67	-1.1
52,279	+		DDA3937_RS00215	0.67	+0.3
52,280	-		DDA3937_RS00215	0.67	-0.5
52,280	-		DDA3937_RS00215	0.67	-0.7
52,280	-		DDA3937_RS00215	0.67	-0.9
52,280	-		DDA3937_RS00215	0.67	-0.0
52,280	-		DDA3937_RS00215	0.67	-1.3
52,280	-		DDA3937_RS00215	0.67	-0.1
52,280	-		DDA3937_RS00215	0.67	+0.6
52,287	+		DDA3937_RS00215	0.68	+0.2
52,374	+		DDA3937_RS00215	0.79	+0.6
52,374	+		DDA3937_RS00215	0.79	+2.7
52,375	-				-0.3
52,375	-		DDA3937_RS00215	0.79	+1.0
52,375	-		DDA3937_RS00215	0.79	+0.3
52,408	+		DDA3937_RS00215	0.83	-0.5
52,409	-		DDA3937_RS00215	0.83	-0.2
52,445	+		DDA3937_RS00215	0.88	+1.0
52,445	+		DDA3937_RS00215	0.88	-0.4
52,446	-		DDA3937_RS00215	0.88	-0.2
52,446	-		DDA3937_RS00215	0.88	+0.9
52,521	+				-0.8
52,521	+				+0.1
52,521	+				-0.6
52,548	+				+2.4
52,549	-				-0.9
52,581	+				+1.5
52,581	+				-0.8
52,582	-				-1.6
52,590	+				+0.9
52,612	+		DDA3937_RS00220	0.10	-1.4
52,612	+		DDA3937_RS00220	0.10	-0.1
52,613	-		DDA3937_RS00220	0.10	-0.9