Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19745

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
4,494,796	-		DDA3937_RS19740	0.54	-0.1
4,494,796	-		DDA3937_RS19740	0.54	-0.5
4,494,796	-		DDA3937_RS19740	0.54	+2.3
4,494,847	+		DDA3937_RS19740	0.57	-0.5
4,494,847	+		DDA3937_RS19740	0.57	+0.7
4,494,848	-		DDA3937_RS19740	0.57	-0.1
4,494,848	-		DDA3937_RS19740	0.57	-2.5
4,494,850	+		DDA3937_RS19740	0.57	+0.5
4,494,850	+		DDA3937_RS19740	0.57	-0.4
4,494,851	-		DDA3937_RS19740	0.57	+0.8
4,494,851	-		DDA3937_RS19740	0.57	-0.3
4,494,851	-		DDA3937_RS19740	0.57	-0.7
4,494,851	-		DDA3937_RS19740	0.57	+1.1
4,495,046	-		DDA3937_RS19740	0.67	+0.6
4,495,054	+		DDA3937_RS19740	0.67	+0.3
4,495,055	-		DDA3937_RS19740	0.67	-1.1
4,495,181	-		DDA3937_RS19740	0.73	+0.0
4,495,181	-		DDA3937_RS19740	0.73	-1.3
4,495,181	-		DDA3937_RS19740	0.73	+0.3
4,495,246	+		DDA3937_RS19740	0.77	-2.0
4,495,246	+		DDA3937_RS19740	0.77	+1.2
4,495,247	-		DDA3937_RS19740	0.77	-0.5
4,495,247	-		DDA3937_RS19740	0.77	-1.2
4,495,300	+		DDA3937_RS19740	0.80	-1.0
4,495,301	-		DDA3937_RS19740	0.80	-2.9
4,495,332	+		DDA3937_RS19740	0.81	+1.5
4,495,333	-		DDA3937_RS19740	0.81	-2.6
4,495,440	-		DDA3937_RS19740	0.87	-1.6
4,495,498	+		DDA3937_RS19740	0.90	-1.0
4,495,528	+				-1.8
4,495,529	-				-0.4
4,495,668	+				+1.4
4,495,668	+				-0.0
4,495,668	+				+0.2
4,495,668	+				-0.5
4,495,669	-				-0.5
4,495,669	-				-0.8
4,495,669	-				-0.8
4,495,669	-				-0.9
4,495,722	+				-2.6
4,495,722	+				-1.1
4,495,723	-				-1.8
4,495,794	+				-1.5
4,495,794	+				-0.7
4,495,794	+				-0.9
4,495,795	-				+2.1
4,495,795	-				-0.9
4,495,830	+				-0.7
4,495,915	+				-2.7
4,495,927	+		DDA3937_RS19745	0.10	-1.1
4,496,025	+		DDA3937_RS19745	0.15	-3.6
4,496,025	+		DDA3937_RS19745	0.15	-1.9
4,496,025	+		DDA3937_RS19745	0.15	+0.9
4,496,026	-		DDA3937_RS19745	0.15	-0.6
4,496,037	+		DDA3937_RS19745	0.15	+1.2
4,496,037	+		DDA3937_RS19745	0.15	-0.3
4,496,226	+		DDA3937_RS19745	0.24	-1.7
4,496,226	+		DDA3937_RS19745	0.24	-0.1
4,496,226	+		DDA3937_RS19745	0.24	-0.1
4,496,227	-		DDA3937_RS19745	0.24	-0.3
4,496,229	+		DDA3937_RS19745	0.24	-0.8
4,496,229	+		DDA3937_RS19745	0.24	+0.8
4,496,229	+		DDA3937_RS19745	0.24	-0.3
4,496,229	+		DDA3937_RS19745	0.24	-0.0
4,496,229	+				+0.7
4,496,229	+		DDA3937_RS19745	0.24	-0.6
4,496,230	-		DDA3937_RS19745	0.24	-0.6
4,496,230	-		DDA3937_RS19745	0.24	-0.1
4,496,343	+		DDA3937_RS19745	0.29	-0.9
4,496,343	+		DDA3937_RS19745	0.29	-0.6
4,496,344	-		DDA3937_RS19745	0.29	+1.1
4,496,344	-		DDA3937_RS19745	0.29	-0.5
4,496,344	-		DDA3937_RS19745	0.29	-0.9
4,496,344	-		DDA3937_RS19745	0.29	-0.7
4,496,349	+		DDA3937_RS19745	0.30	-0.8
4,496,349	+		DDA3937_RS19745	0.30	-1.9
4,496,349	+		DDA3937_RS19745	0.30	-0.9
4,496,350	-		DDA3937_RS19745	0.30	+0.9
4,496,350	-		DDA3937_RS19745	0.30	+0.1
4,496,350	-		DDA3937_RS19745	0.30	-3.5
4,496,350	-		DDA3937_RS19745	0.30	-1.9
4,496,382	+		DDA3937_RS19745	0.31	-0.1
4,496,383	-		DDA3937_RS19745	0.31	-0.6
4,496,383	-		DDA3937_RS19745	0.31	-0.9
4,496,412	+		DDA3937_RS19745	0.32	-0.9
4,496,412	+		DDA3937_RS19745	0.32	+0.3
4,496,412	+		DDA3937_RS19745	0.32	-0.5
4,496,412	+		DDA3937_RS19745	0.32	-0.3
4,496,413	-		DDA3937_RS19745	0.33	+0.9
4,496,413	-		DDA3937_RS19745	0.33	-0.6
4,496,413	-		DDA3937_RS19745	0.33	-1.3
4,496,451	+		DDA3937_RS19745	0.34	-1.6
4,496,451	+		DDA3937_RS19745	0.34	-0.2
4,496,452	-		DDA3937_RS19745	0.34	+0.7
4,496,565	+		DDA3937_RS19745	0.39	-0.4
4,496,610	+		DDA3937_RS19745	0.42	-0.5
4,496,611	-		DDA3937_RS19745	0.42	-0.2
4,496,611	-		DDA3937_RS19745	0.42	-3.1
4,496,643	+		DDA3937_RS19745	0.43	+0.1
4,496,643	+		DDA3937_RS19745	0.43	-1.1
4,496,644	-		DDA3937_RS19745	0.43	-0.2
4,496,652	+		DDA3937_RS19745	0.43	-0.0
4,496,712	+		DDA3937_RS19745	0.46	+0.9
4,496,713	-		DDA3937_RS19745	0.46	-0.2
4,496,713	-		DDA3937_RS19745	0.46	-0.6
4,496,733	+		DDA3937_RS19745	0.47	-0.7
4,496,733	+		DDA3937_RS19745	0.47	-1.7
4,496,734	-		DDA3937_RS19745	0.47	-0.7
4,496,734	-		DDA3937_RS19745	0.47	+1.1
4,496,734	-		DDA3937_RS19745	0.47	-0.8
4,496,734	-		DDA3937_RS19745	0.47	-0.4
4,496,734	-		DDA3937_RS19745	0.47	+0.1
4,496,737	+		DDA3937_RS19745	0.47	-0.2
4,496,764	-		DDA3937_RS19745	0.49	-0.9
4,496,791	-		DDA3937_RS19745	0.50	-0.1
4,496,812	-		DDA3937_RS19745	0.51	-0.2
4,496,817	+		DDA3937_RS19745	0.51	-0.5
4,496,818	-		DDA3937_RS19745	0.51	+0.5
4,496,850	+		DDA3937_RS19745	0.53	-0.2
4,496,851	-		DDA3937_RS19745	0.53	+0.7
4,496,854	+		DDA3937_RS19745	0.53	-1.1
4,496,854	+		DDA3937_RS19745	0.53	-0.1
4,496,970	+		DDA3937_RS19745	0.58	-0.3
4,496,971	-		DDA3937_RS19745	0.58	-2.6
4,496,971	-		DDA3937_RS19745	0.58	+0.2
4,496,973	-		DDA3937_RS19745	0.58	-0.7
4,497,043	+		DDA3937_RS19745	0.61	-0.9
4,497,063	+		DDA3937_RS19745	0.62	-0.0
4,497,064	-		DDA3937_RS19745	0.62	-2.8
4,497,064	-		DDA3937_RS19745	0.62	-1.7
4,497,150	+		DDA3937_RS19745	0.66	+0.8
4,497,150	+		DDA3937_RS19745	0.66	-1.2
4,497,151	-		DDA3937_RS19745	0.66	-1.5
4,497,271	-		DDA3937_RS19745	0.72	-0.2
4,497,300	+		DDA3937_RS19745	0.73	-0.2
4,497,325	-		DDA3937_RS19745	0.74	-0.3
4,497,614	-		DDA3937_RS19745	0.88	-0.2
4,497,614	-		DDA3937_RS19745	0.88	-0.8
4,497,614	-		DDA3937_RS19745	0.88	-0.1
4,497,722	-				-0.3
4,497,779	+				-1.3
4,497,780	-				+0.8
4,497,780	-				+1.2
4,497,780	-				-1.0
4,497,780	-				+0.2
4,497,780	-				+0.3
4,497,809	-				-0.9
4,497,834	+				+0.0
4,497,857	-				-0.3
4,497,857	-				-0.9
4,497,859	+				+1.2
4,497,860	-				+1.2
4,497,905	+				-0.1
4,497,923	-				+0.7
4,497,932	-				-1.1
4,497,961	+				-2.1
4,497,961	+				-0.1
4,497,962	-				-0.2
4,497,962	-				-1.1
4,497,962	-				-1.4
4,498,017	-				-0.5
4,498,027	+				-2.6
4,498,027	+				+1.2
4,498,027	+				+0.5
4,498,027	+				+0.9
4,498,027	+				-0.2
4,498,027	+				-1.1
4,498,028	-				-3.4
4,498,028	-				+0.4
4,498,075	+				-0.6
4,498,076	-				-0.1
4,498,089	+				+0.8
4,498,090	-				+0.5
4,498,101	+				-2.1
4,498,101	+				-0.9
4,498,102	-				+0.8
4,498,102	-				-0.9
4,498,104	+				-0.3
4,498,105	-				-1.1
4,498,157	+				+1.1
4,498,179	+				-0.2
4,498,180	-				-0.3
4,498,257	+				-0.2
4,498,264	+				-2.2
4,498,265	-				+0.0
4,498,265	-				+0.1
4,498,265	-				+0.3
4,498,265	-				-0.1
4,498,265	-				-1.5
4,498,265	-				-0.6
4,498,269	+				+1.6
4,498,299	+				+0.6
4,498,299	+				+0.0
4,498,300	-				-0.4
4,498,300	-				-1.3
4,498,300	-				+1.0
4,498,300	-				+0.5
4,498,316	+				+2.4
4,498,316	+				-0.5
4,498,316	+				+1.5
4,498,331	+				+0.1
4,498,331	+				-2.0
4,498,332	-				-1.9
4,498,406	+				+0.3
4,498,407	-				-0.4
4,498,442	+		DDA3937_RS19750	0.10	+1.5
4,498,443	-		DDA3937_RS19750	0.10	+0.1
4,498,443	-		DDA3937_RS19750	0.10	-0.2
4,498,456	+		DDA3937_RS19750	0.11	+0.7
4,498,566	-		DDA3937_RS19750	0.18	+0.9
4,498,646	+		DDA3937_RS19750	0.22	-0.8
4,498,844	-		DDA3937_RS19750	0.34	-0.3
4,498,844	-		DDA3937_RS19750	0.34	+0.5
4,498,877	+		DDA3937_RS19750	0.36	-0.8
4,498,878	-		DDA3937_RS19750	0.36	+0.3
4,498,878	-		DDA3937_RS19750	0.36	+0.2
4,498,878	-		DDA3937_RS19750	0.36	-1.0
4,498,878	-		DDA3937_RS19750	0.36	+0.1