Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS19415 and DDA3937_RS19420 are separated by 65 nucleotides DDA3937_RS19420 and DDA3937_RS19425 are separated by 119 nucleotides DDA3937_RS19425 and DDA3937_RS19430 overlap by 4 nucleotides DDA3937_RS19430 and DDA3937_RS19435 are separated by 126 nucleotides
DDA3937_RS19415: DDA3937_RS19415 - ABC transporter ATP-binding protein, at 4,414,242 to 4,416,161
_RS19415
DDA3937_RS19420: DDA3937_RS19420 - LysE family translocator, at 4,416,227 to 4,416,832
_RS19420
DDA3937_RS19425: DDA3937_RS19425 - hydrolase, at 4,416,952 to 4,417,950
_RS19425
DDA3937_RS19430: DDA3937_RS19430 - YheU family protein, at 4,417,947 to 4,418,183
_RS19430
DDA3937_RS19435: DDA3937_RS19435 - phosphoribulokinase, at 4,418,310 to 4,419,179
_RS19435
Position (kb) 4416
4417
4418 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4416.015 kb on + strand at 4416.015 kb on + strand at 4416.016 kb on - strand at 4416.016 kb on - strand at 4416.364 kb on + strand, within DDA3937_RS19420 at 4416.408 kb on + strand, within DDA3937_RS19420 at 4416.409 kb on - strand, within DDA3937_RS19420 at 4416.427 kb on + strand, within DDA3937_RS19420 at 4416.428 kb on - strand, within DDA3937_RS19420 at 4416.498 kb on + strand, within DDA3937_RS19420 at 4416.498 kb on + strand, within DDA3937_RS19420 at 4416.498 kb on + strand, within DDA3937_RS19420 at 4416.498 kb on + strand, within DDA3937_RS19420 at 4416.498 kb on + strand, within DDA3937_RS19420 at 4416.499 kb on - strand, within DDA3937_RS19420 at 4416.499 kb on - strand, within DDA3937_RS19420 at 4416.547 kb on - strand, within DDA3937_RS19420 at 4416.585 kb on + strand, within DDA3937_RS19420 at 4416.586 kb on - strand, within DDA3937_RS19420 at 4416.586 kb on - strand, within DDA3937_RS19420 at 4416.586 kb on - strand, within DDA3937_RS19420 at 4416.586 kb on - strand, within DDA3937_RS19420 at 4416.599 kb on + strand, within DDA3937_RS19420 at 4416.600 kb on - strand, within DDA3937_RS19420 at 4416.600 kb on - strand, within DDA3937_RS19420 at 4416.627 kb on + strand, within DDA3937_RS19420 at 4416.673 kb on + strand, within DDA3937_RS19420 at 4416.673 kb on + strand, within DDA3937_RS19420 at 4416.673 kb on + strand, within DDA3937_RS19420 at 4416.673 kb on + strand, within DDA3937_RS19420 at 4416.673 kb on + strand, within DDA3937_RS19420 at 4416.673 kb on + strand, within DDA3937_RS19420 at 4416.673 kb on + strand, within DDA3937_RS19420 at 4416.673 kb on + strand, within DDA3937_RS19420 at 4416.674 kb on - strand, within DDA3937_RS19420 at 4416.674 kb on - strand, within DDA3937_RS19420 at 4416.674 kb on - strand, within DDA3937_RS19420 at 4416.674 kb on - strand, within DDA3937_RS19420 at 4416.694 kb on + strand, within DDA3937_RS19420 at 4416.694 kb on + strand, within DDA3937_RS19420 at 4416.695 kb on - strand, within DDA3937_RS19420 at 4416.749 kb on - strand at 4416.752 kb on + strand, within DDA3937_RS19420 at 4416.752 kb on + strand, within DDA3937_RS19420 at 4416.752 kb on + strand, within DDA3937_RS19420 at 4416.752 kb on + strand, within DDA3937_RS19420 at 4416.752 kb on + strand, within DDA3937_RS19420 at 4416.752 kb on + strand, within DDA3937_RS19420 at 4416.752 kb on + strand, within DDA3937_RS19420 at 4416.752 kb on + strand, within DDA3937_RS19420 at 4416.752 kb on + strand, within DDA3937_RS19420 at 4416.752 kb on + strand, within DDA3937_RS19420 at 4416.752 kb on + strand, within DDA3937_RS19420 at 4416.752 kb on + strand, within DDA3937_RS19420 at 4416.753 kb on - strand, within DDA3937_RS19420 at 4416.753 kb on - strand, within DDA3937_RS19420 at 4416.753 kb on - strand, within DDA3937_RS19420 at 4416.753 kb on - strand, within DDA3937_RS19420 at 4416.753 kb on - strand, within DDA3937_RS19420 at 4416.753 kb on - strand, within DDA3937_RS19420 at 4416.753 kb on - strand, within DDA3937_RS19420 at 4416.753 kb on - strand, within DDA3937_RS19420 at 4416.753 kb on - strand, within DDA3937_RS19420 at 4416.757 kb on + strand, within DDA3937_RS19420 at 4416.757 kb on + strand, within DDA3937_RS19420 at 4416.757 kb on + strand, within DDA3937_RS19420 at 4416.757 kb on + strand, within DDA3937_RS19420 at 4416.758 kb on - strand, within DDA3937_RS19420 at 4416.758 kb on - strand, within DDA3937_RS19420 at 4416.758 kb on - strand, within DDA3937_RS19420 at 4416.758 kb on - strand, within DDA3937_RS19420 at 4416.758 kb on - strand, within DDA3937_RS19420 at 4416.758 kb on - strand, within DDA3937_RS19420 at 4416.758 kb on - strand, within DDA3937_RS19420 at 4416.760 kb on + strand, within DDA3937_RS19420 at 4416.760 kb on + strand, within DDA3937_RS19420 at 4416.760 kb on + strand, within DDA3937_RS19420 at 4416.760 kb on + strand, within DDA3937_RS19420 at 4416.760 kb on + strand, within DDA3937_RS19420 at 4416.760 kb on + strand, within DDA3937_RS19420 at 4416.760 kb on + strand, within DDA3937_RS19420 at 4416.760 kb on + strand, within DDA3937_RS19420 at 4416.760 kb on + strand, within DDA3937_RS19420 at 4416.760 kb on + strand, within DDA3937_RS19420 at 4416.761 kb on - strand, within DDA3937_RS19420 at 4416.761 kb on - strand, within DDA3937_RS19420 at 4416.761 kb on - strand, within DDA3937_RS19420 at 4416.761 kb on - strand, within DDA3937_RS19420 at 4416.763 kb on + strand, within DDA3937_RS19420 at 4416.779 kb on - strand at 4416.870 kb on + strand at 4416.870 kb on + strand at 4416.870 kb on + strand at 4416.870 kb on + strand at 4416.871 kb on - strand at 4416.871 kb on - strand at 4416.871 kb on - strand at 4416.951 kb on + strand at 4417.196 kb on - strand, within DDA3937_RS19425 at 4417.525 kb on + strand, within DDA3937_RS19425 at 4417.534 kb on + strand, within DDA3937_RS19425 at 4417.534 kb on + strand, within DDA3937_RS19425 at 4417.534 kb on + strand, within DDA3937_RS19425 at 4417.534 kb on + strand, within DDA3937_RS19425 at 4417.535 kb on - strand, within DDA3937_RS19425 at 4417.535 kb on - strand, within DDA3937_RS19425 at 4417.535 kb on - strand, within DDA3937_RS19425 at 4417.625 kb on + strand, within DDA3937_RS19425 at 4417.626 kb on - strand, within DDA3937_RS19425 at 4417.667 kb on + strand, within DDA3937_RS19425 at 4417.668 kb on - strand, within DDA3937_RS19425 at 4417.668 kb on - strand at 4417.693 kb on + strand, within DDA3937_RS19425 at 4417.693 kb on + strand, within DDA3937_RS19425 at 4417.693 kb on + strand, within DDA3937_RS19425 at 4417.694 kb on - strand, within DDA3937_RS19425 at 4417.800 kb on + strand, within DDA3937_RS19425 at 4417.801 kb on - strand, within DDA3937_RS19425 at 4417.802 kb on + strand, within DDA3937_RS19425 at 4417.802 kb on + strand, within DDA3937_RS19425 at 4417.802 kb on + strand, within DDA3937_RS19425 at 4417.802 kb on + strand, within DDA3937_RS19425 at 4417.802 kb on + strand, within DDA3937_RS19425 at 4417.803 kb on - strand, within DDA3937_RS19425 at 4417.828 kb on + strand, within DDA3937_RS19425 at 4417.828 kb on + strand, within DDA3937_RS19425 at 4417.829 kb on - strand, within DDA3937_RS19425 at 4417.908 kb on + strand at 4417.908 kb on + strand at 4417.909 kb on - strand at 4417.909 kb on - strand at 4417.923 kb on + strand at 4417.930 kb on + strand at 4417.931 kb on - strand at 4418.069 kb on + strand, within DDA3937_RS19430 at 4418.069 kb on + strand, within DDA3937_RS19430 at 4418.069 kb on + strand, within DDA3937_RS19430 at 4418.070 kb on - strand, within DDA3937_RS19430 at 4418.070 kb on - strand, within DDA3937_RS19430 at 4418.070 kb on - strand, within DDA3937_RS19430 at 4418.071 kb on + strand, within DDA3937_RS19430 at 4418.071 kb on + strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.135 kb on + strand, within DDA3937_RS19430 at 4418.135 kb on + strand, within DDA3937_RS19430 at 4418.135 kb on + strand, within DDA3937_RS19430 at 4418.135 kb on + strand, within DDA3937_RS19430 at 4418.135 kb on + strand, within DDA3937_RS19430 at 4418.136 kb on - strand, within DDA3937_RS19430 at 4418.136 kb on - strand, within DDA3937_RS19430 at 4418.136 kb on - strand, within DDA3937_RS19430 at 4418.172 kb on + strand at 4418.202 kb on + strand at 4418.223 kb on + strand at 4418.224 kb on - strand at 4418.224 kb on - strand at 4418.226 kb on - strand at 4418.226 kb on - strand at 4418.226 kb on - strand at 4418.226 kb on - strand at 4418.226 kb on - strand at 4418.234 kb on + strand at 4418.241 kb on + strand at 4418.241 kb on + strand at 4418.248 kb on + strand at 4418.248 kb on + strand at 4418.248 kb on + strand at 4418.249 kb on - strand at 4418.249 kb on - strand at 4418.249 kb on - strand at 4418.439 kb on + strand, within DDA3937_RS19435 at 4418.439 kb on + strand, within DDA3937_RS19435 at 4418.439 kb on + strand at 4418.439 kb on + strand, within DDA3937_RS19435 at 4418.440 kb on - strand, within DDA3937_RS19435 at 4418.440 kb on - strand, within DDA3937_RS19435 at 4418.440 kb on - strand at 4418.449 kb on - strand, within DDA3937_RS19435 at 4418.450 kb on + strand, within DDA3937_RS19435 at 4418.553 kb on - strand, within DDA3937_RS19435 at 4418.553 kb on - strand, within DDA3937_RS19435 at 4418.553 kb on - strand at 4418.566 kb on - strand, within DDA3937_RS19435 at 4418.610 kb on + strand, within DDA3937_RS19435 at 4418.610 kb on + strand, within DDA3937_RS19435 at 4418.611 kb on - strand, within DDA3937_RS19435 at 4418.611 kb on - strand, within DDA3937_RS19435 at 4418.629 kb on - strand, within DDA3937_RS19435 at 4418.695 kb on - strand, within DDA3937_RS19435 at 4418.695 kb on - strand, within DDA3937_RS19435 at 4418.877 kb on + strand, within DDA3937_RS19435 at 4418.877 kb on + strand, within DDA3937_RS19435 at 4418.878 kb on - strand at 4418.878 kb on - strand, within DDA3937_RS19435 at 4418.878 kb on - strand, within DDA3937_RS19435
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 4,416,015 + -2.0 4,416,015 + -1.1 4,416,016 - +0.8 4,416,016 - -0.1 4,416,364 + DDA3937_RS19420 0.23 -0.4 4,416,408 + DDA3937_RS19420 0.30 -0.5 4,416,409 - DDA3937_RS19420 0.30 -0.4 4,416,427 + DDA3937_RS19420 0.33 -0.3 4,416,428 - DDA3937_RS19420 0.33 +1.0 4,416,498 + DDA3937_RS19420 0.45 +0.7 4,416,498 + DDA3937_RS19420 0.45 -1.0 4,416,498 + DDA3937_RS19420 0.45 +0.6 4,416,498 + DDA3937_RS19420 0.45 +0.9 4,416,498 + DDA3937_RS19420 0.45 -0.0 4,416,499 - DDA3937_RS19420 0.45 -0.5 4,416,499 - DDA3937_RS19420 0.45 -1.7 4,416,547 - DDA3937_RS19420 0.53 +0.7 4,416,585 + DDA3937_RS19420 0.59 -0.1 4,416,586 - DDA3937_RS19420 0.59 -0.1 4,416,586 - DDA3937_RS19420 0.59 +1.0 4,416,586 - DDA3937_RS19420 0.59 -0.7 4,416,586 - DDA3937_RS19420 0.59 -0.6 4,416,599 + DDA3937_RS19420 0.61 +0.0 4,416,600 - DDA3937_RS19420 0.62 -3.3 4,416,600 - DDA3937_RS19420 0.62 +1.0 4,416,627 + DDA3937_RS19420 0.66 -0.9 4,416,673 + DDA3937_RS19420 0.74 +0.7 4,416,673 + DDA3937_RS19420 0.74 +1.0 4,416,673 + DDA3937_RS19420 0.74 +0.8 4,416,673 + DDA3937_RS19420 0.74 -0.3 4,416,673 + DDA3937_RS19420 0.74 -0.6 4,416,673 + DDA3937_RS19420 0.74 -0.6 4,416,673 + DDA3937_RS19420 0.74 +0.0 4,416,673 + DDA3937_RS19420 0.74 -0.6 4,416,674 - DDA3937_RS19420 0.74 +0.7 4,416,674 - DDA3937_RS19420 0.74 -1.9 4,416,674 - DDA3937_RS19420 0.74 -2.1 4,416,674 - DDA3937_RS19420 0.74 -0.9 4,416,694 + DDA3937_RS19420 0.77 -0.7 4,416,694 + DDA3937_RS19420 0.77 +0.4 4,416,695 - DDA3937_RS19420 0.77 -0.7 4,416,749 - +1.2 4,416,752 + DDA3937_RS19420 0.87 -0.6 4,416,752 + DDA3937_RS19420 0.87 +1.3 4,416,752 + DDA3937_RS19420 0.87 -0.4 4,416,752 + DDA3937_RS19420 0.87 +0.7 4,416,752 + DDA3937_RS19420 0.87 -2.3 4,416,752 + DDA3937_RS19420 0.87 -0.4 4,416,752 + DDA3937_RS19420 0.87 -1.8 4,416,752 + DDA3937_RS19420 0.87 -1.2 4,416,752 + DDA3937_RS19420 0.87 +0.0 4,416,752 + DDA3937_RS19420 0.87 +1.0 4,416,752 + DDA3937_RS19420 0.87 -0.1 4,416,752 + DDA3937_RS19420 0.87 -0.6 4,416,753 - DDA3937_RS19420 0.87 -0.6 4,416,753 - DDA3937_RS19420 0.87 -1.1 4,416,753 - DDA3937_RS19420 0.87 -0.9 4,416,753 - DDA3937_RS19420 0.87 -1.4 4,416,753 - DDA3937_RS19420 0.87 +0.6 4,416,753 - DDA3937_RS19420 0.87 +0.7 4,416,753 - DDA3937_RS19420 0.87 -1.6 4,416,753 - DDA3937_RS19420 0.87 -0.9 4,416,753 - DDA3937_RS19420 0.87 +0.5 4,416,757 + DDA3937_RS19420 0.87 +0.6 4,416,757 + DDA3937_RS19420 0.87 +0.4 4,416,757 + DDA3937_RS19420 0.87 +0.2 4,416,757 + DDA3937_RS19420 0.87 +0.6 4,416,758 - DDA3937_RS19420 0.88 -0.4 4,416,758 - DDA3937_RS19420 0.88 -0.7 4,416,758 - DDA3937_RS19420 0.88 +0.6 4,416,758 - DDA3937_RS19420 0.88 +0.1 4,416,758 - DDA3937_RS19420 0.88 +0.1 4,416,758 - DDA3937_RS19420 0.88 +0.3 4,416,758 - DDA3937_RS19420 0.88 -1.2 4,416,760 + DDA3937_RS19420 0.88 -0.2 4,416,760 + DDA3937_RS19420 0.88 -2.6 4,416,760 + DDA3937_RS19420 0.88 -0.6 4,416,760 + DDA3937_RS19420 0.88 -2.6 4,416,760 + DDA3937_RS19420 0.88 -0.1 4,416,760 + DDA3937_RS19420 0.88 +0.9 4,416,760 + DDA3937_RS19420 0.88 -0.1 4,416,760 + DDA3937_RS19420 0.88 -0.4 4,416,760 + DDA3937_RS19420 0.88 +0.4 4,416,760 + DDA3937_RS19420 0.88 +0.0 4,416,761 - DDA3937_RS19420 0.88 +0.2 4,416,761 - DDA3937_RS19420 0.88 -0.2 4,416,761 - DDA3937_RS19420 0.88 -0.6 4,416,761 - DDA3937_RS19420 0.88 +0.4 4,416,763 + DDA3937_RS19420 0.88 -0.9 4,416,779 - -0.1 4,416,870 + +2.8 4,416,870 + -0.6 4,416,870 + -0.6 4,416,870 + -1.6 4,416,871 - +0.1 4,416,871 - -0.8 4,416,871 - -1.6 4,416,951 + +0.1 4,417,196 - DDA3937_RS19425 0.24 -0.4 4,417,525 + DDA3937_RS19425 0.57 -0.3 4,417,534 + DDA3937_RS19425 0.58 -0.6 4,417,534 + DDA3937_RS19425 0.58 -2.4 4,417,534 + DDA3937_RS19425 0.58 -1.0 4,417,534 + DDA3937_RS19425 0.58 -1.3 4,417,535 - DDA3937_RS19425 0.58 +0.9 4,417,535 - DDA3937_RS19425 0.58 -0.4 4,417,535 - DDA3937_RS19425 0.58 -1.5 4,417,625 + DDA3937_RS19425 0.67 +0.1 4,417,626 - DDA3937_RS19425 0.67 -0.3 4,417,667 + DDA3937_RS19425 0.72 +0.1 4,417,668 - DDA3937_RS19425 0.72 -1.8 4,417,668 - +1.0 4,417,693 + DDA3937_RS19425 0.74 -0.7 4,417,693 + DDA3937_RS19425 0.74 +0.1 4,417,693 + DDA3937_RS19425 0.74 -1.6 4,417,694 - DDA3937_RS19425 0.74 +0.2 4,417,800 + DDA3937_RS19425 0.85 +1.0 4,417,801 - DDA3937_RS19425 0.85 -2.3 4,417,802 + DDA3937_RS19425 0.85 -0.6 4,417,802 + DDA3937_RS19425 0.85 -1.6 4,417,802 + DDA3937_RS19425 0.85 -0.9 4,417,802 + DDA3937_RS19425 0.85 -0.3 4,417,802 + DDA3937_RS19425 0.85 -2.6 4,417,803 - DDA3937_RS19425 0.85 -1.1 4,417,828 + DDA3937_RS19425 0.88 -0.7 4,417,828 + DDA3937_RS19425 0.88 +0.3 4,417,829 - DDA3937_RS19425 0.88 -0.0 4,417,908 + -0.4 4,417,908 + +1.0 4,417,909 - +0.3 4,417,909 - +0.1 4,417,923 + +0.4 4,417,930 + -2.4 4,417,931 - +1.4 4,418,069 + DDA3937_RS19430 0.51 +0.5 4,418,069 + DDA3937_RS19430 0.51 -0.9 4,418,069 + DDA3937_RS19430 0.51 +0.4 4,418,070 - DDA3937_RS19430 0.52 -1.4 4,418,070 - DDA3937_RS19430 0.52 -1.5 4,418,070 - DDA3937_RS19430 0.52 -0.4 4,418,071 + DDA3937_RS19430 0.52 -0.6 4,418,071 + DDA3937_RS19430 0.52 -0.7 4,418,072 - DDA3937_RS19430 0.53 -0.6 4,418,072 - DDA3937_RS19430 0.53 -2.4 4,418,072 - DDA3937_RS19430 0.53 +0.6 4,418,072 - DDA3937_RS19430 0.53 -1.3 4,418,072 - DDA3937_RS19430 0.53 +0.9 4,418,072 - DDA3937_RS19430 0.53 -2.1 4,418,072 - DDA3937_RS19430 0.53 -1.7 4,418,072 - DDA3937_RS19430 0.53 -0.6 4,418,072 - DDA3937_RS19430 0.53 -0.1 4,418,072 - DDA3937_RS19430 0.53 +0.9 4,418,135 + DDA3937_RS19430 0.79 -0.7 4,418,135 + DDA3937_RS19430 0.79 -0.3 4,418,135 + DDA3937_RS19430 0.79 -1.2 4,418,135 + DDA3937_RS19430 0.79 -0.1 4,418,135 + DDA3937_RS19430 0.79 -0.7 4,418,136 - DDA3937_RS19430 0.80 +0.1 4,418,136 - DDA3937_RS19430 0.80 -1.6 4,418,136 - DDA3937_RS19430 0.80 -2.6 4,418,172 + +0.4 4,418,202 + -1.6 4,418,223 + +1.1 4,418,224 - -0.4 4,418,224 - +0.7 4,418,226 - -1.1 4,418,226 - -0.1 4,418,226 - -0.1 4,418,226 - -1.0 4,418,226 - -0.1 4,418,234 + +0.5 4,418,241 + -1.0 4,418,241 + +0.1 4,418,248 + +1.4 4,418,248 + -0.6 4,418,248 + +0.4 4,418,249 - -0.6 4,418,249 - +0.1 4,418,249 - -2.1 4,418,439 + DDA3937_RS19435 0.15 +0.4 4,418,439 + DDA3937_RS19435 0.15 +0.4 4,418,439 + -0.5 4,418,439 + DDA3937_RS19435 0.15 +0.5 4,418,440 - DDA3937_RS19435 0.15 -1.7 4,418,440 - DDA3937_RS19435 0.15 +1.5 4,418,440 - -0.1 4,418,449 - DDA3937_RS19435 0.16 -0.1 4,418,450 + DDA3937_RS19435 0.16 -0.8 4,418,553 - DDA3937_RS19435 0.28 +0.3 4,418,553 - DDA3937_RS19435 0.28 -1.0 4,418,553 - +0.9 4,418,566 - DDA3937_RS19435 0.29 -0.1 4,418,610 + DDA3937_RS19435 0.34 +0.1 4,418,610 + DDA3937_RS19435 0.34 -0.9 4,418,611 - DDA3937_RS19435 0.35 -0.1 4,418,611 - DDA3937_RS19435 0.35 +0.2 4,418,629 - DDA3937_RS19435 0.37 -0.9 4,418,695 - DDA3937_RS19435 0.44 -1.4 4,418,695 - DDA3937_RS19435 0.44 -1.9 4,418,877 + DDA3937_RS19435 0.65 -2.2 4,418,877 + DDA3937_RS19435 0.65 -0.3 4,418,878 - +0.9 4,418,878 - DDA3937_RS19435 0.65 -0.9 4,418,878 - DDA3937_RS19435 0.65 +0.3
Or see this region's nucleotide sequence