Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08205

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
1,856,464	+		DDA3937_RS08195	0.66	-0.7
1,856,464	+		DDA3937_RS08195	0.66	+0.5
1,856,465	-		DDA3937_RS08195	0.67	-0.6
1,856,501	-		DDA3937_RS08195	0.70	-0.8
1,856,501	-		DDA3937_RS08195	0.70	+0.3
1,856,533	+		DDA3937_RS08195	0.74	-0.9
1,856,533	+		DDA3937_RS08195	0.74	+0.3
1,856,533	+				+1.9
1,856,534	-		DDA3937_RS08195	0.74	-2.3
1,856,534	-		DDA3937_RS08195	0.74	+0.1
1,856,534	-		DDA3937_RS08195	0.74	+2.4
1,856,547	+		DDA3937_RS08195	0.75	-1.7
1,856,548	-		DDA3937_RS08195	0.75	+0.0
1,856,548	-		DDA3937_RS08195	0.75	-2.7
1,856,548	-		DDA3937_RS08195	0.75	-0.5
1,856,548	-		DDA3937_RS08195	0.75	+0.6
1,856,548	-		DDA3937_RS08195	0.75	-0.4
1,856,569	+		DDA3937_RS08195	0.77	-0.6
1,856,686	+		DDA3937_RS08195	0.89	-0.7
1,856,686	+		DDA3937_RS08195	0.89	+0.2
1,856,723	+				-1.1
1,856,723	+				-0.4
1,856,723	+				+0.9
1,856,723	+				-1.2
1,856,723	+				+0.5
1,856,724	-				-1.1
1,856,724	-				-0.2
1,856,724	-				-0.8
1,856,725	+				+2.3
1,856,785	+				+0.4
1,856,785	+				-1.7
1,856,786	-				-1.1
1,856,834	+				-0.0
1,856,835	-				+1.9
1,856,910	+				-1.1
1,856,910	+				-1.9
1,856,911	-				+0.6
1,856,911	-				+0.6
1,856,996	+		DDA3937_RS08200	0.28	+1.9
1,856,996	+		DDA3937_RS08200	0.28	+1.5
1,856,997	-		DDA3937_RS08200	0.28	-1.5
1,857,055	-		DDA3937_RS08200	0.42	-0.5
1,857,092	+		DDA3937_RS08200	0.51	+1.3
1,857,093	-		DDA3937_RS08200	0.51	+0.7
1,857,093	-		DDA3937_RS08200	0.51	-1.9
1,857,097	+		DDA3937_RS08200	0.52	-0.4
1,857,097	+		DDA3937_RS08200	0.52	-0.0
1,857,097	+		DDA3937_RS08200	0.52	+1.6
1,857,098	-		DDA3937_RS08200	0.52	+0.6
1,857,098	-		DDA3937_RS08200	0.52	-2.3
1,857,106	-		DDA3937_RS08200	0.54	+0.5
1,857,181	+		DDA3937_RS08200	0.72	-2.8
1,857,232	+		DDA3937_RS08200	0.84	-0.8
1,857,232	+		DDA3937_RS08200	0.84	-1.6
1,857,239	+		DDA3937_RS08200	0.85	+0.6
1,857,239	+		DDA3937_RS08200	0.85	-0.1
1,857,240	-		DDA3937_RS08200	0.85	-0.6
1,857,261	+				-0.5
1,857,274	+				-1.0
1,857,275	-				-1.4
1,857,277	+				+1.1
1,857,278	-				-1.4
1,857,278	-				-0.3
1,857,299	+				-1.4
1,857,299	+				-3.3
1,857,299	+				-0.8
1,857,299	+				+1.0
1,857,299	+				+2.0
1,857,318	+				+0.4
1,857,319	-				+0.3
1,857,330	+				-1.3
1,857,330	+				-2.4
1,857,331	-				-1.9
1,857,331	-				+0.4
1,857,356	+				-0.8
1,857,356	+				-0.2
1,857,356	+				-0.7
1,857,356	+				-1.2
1,857,357	-				-0.2
1,857,357	-				-1.1
1,857,357	-				-1.1
1,857,357	-				-0.8
1,857,358	+				+0.1
1,857,358	+				+0.1
1,857,359	-				+0.9
1,857,482	+		DDA3937_RS08205	0.14	+0.2
1,857,482	+		DDA3937_RS08205	0.14	-0.1
1,857,482	+		DDA3937_RS08205	0.14	-0.2
1,857,482	+		DDA3937_RS08205	0.14	-0.7
1,857,483	-		DDA3937_RS08205	0.14	-0.2
1,857,483	-		DDA3937_RS08205	0.14	+0.2
1,857,483	-		DDA3937_RS08205	0.14	+1.0
1,857,483	-				-0.1
1,857,487	+		DDA3937_RS08205	0.14	-1.1
1,857,487	+		DDA3937_RS08205	0.14	-1.0
1,857,487	+		DDA3937_RS08205	0.14	-0.4
1,857,487	+		DDA3937_RS08205	0.14	+0.2
1,857,487	+		DDA3937_RS08205	0.14	+1.6
1,857,488	-		DDA3937_RS08205	0.14	+0.5
1,857,488	-		DDA3937_RS08205	0.14	-0.5
1,857,505	+		DDA3937_RS08205	0.16	+1.4
1,857,506	-		DDA3937_RS08205	0.16	-1.3
1,857,506	-		DDA3937_RS08205	0.16	+0.9
1,857,515	+		DDA3937_RS08205	0.17	-0.8
1,857,516	-		DDA3937_RS08205	0.18	-1.2
1,857,516	-		DDA3937_RS08205	0.18	-0.9
1,857,516	-		DDA3937_RS08205	0.18	+0.8
1,857,548	+		DDA3937_RS08205	0.21	-1.1
1,857,549	-		DDA3937_RS08205	0.21	+0.2
1,857,593	-		DDA3937_RS08205	0.26	-1.4
1,857,593	-		DDA3937_RS08205	0.26	+0.7
1,857,742	+		DDA3937_RS08205	0.42	+1.2
1,857,813	+		DDA3937_RS08205	0.50	-0.1
1,857,814	-		DDA3937_RS08205	0.50	-2.1
1,857,864	+		DDA3937_RS08205	0.55	+1.2
1,857,865	-		DDA3937_RS08205	0.56	-0.0
1,857,865	-		DDA3937_RS08205	0.56	+1.7
1,857,865	-		DDA3937_RS08205	0.56	-0.1
1,857,879	+		DDA3937_RS08205	0.57	+1.4
1,857,909	-		DDA3937_RS08205	0.60	-0.7
1,857,909	-		DDA3937_RS08205	0.60	+0.2
1,857,916	+		DDA3937_RS08205	0.61	-1.1
1,857,916	+		DDA3937_RS08205	0.61	+0.4
1,857,934	+		DDA3937_RS08205	0.63	-0.9
1,857,958	+		DDA3937_RS08205	0.66	+0.5
1,857,958	+		DDA3937_RS08205	0.66	+0.5
1,857,958	+		DDA3937_RS08205	0.66	-1.7
1,857,958	+		DDA3937_RS08205	0.66	+0.1
1,857,959	-		DDA3937_RS08205	0.66	+0.1
1,858,004	+		DDA3937_RS08205	0.71	-1.5
1,858,004	+		DDA3937_RS08205	0.71	-1.2
1,858,004	+		DDA3937_RS08205	0.71	-0.2
1,858,004	+		DDA3937_RS08205	0.71	-0.5
1,858,004	+		DDA3937_RS08205	0.71	-1.7
1,858,005	-		DDA3937_RS08205	0.71	+0.7
1,858,005	-		DDA3937_RS08205	0.71	+0.3
1,858,005	-		DDA3937_RS08205	0.71	-1.1
1,858,005	-		DDA3937_RS08205	0.71	-1.1
1,858,005	-		DDA3937_RS08205	0.71	-0.2
1,858,020	-		DDA3937_RS08205	0.72	+1.5
1,858,020	-		DDA3937_RS08205	0.72	-2.4
1,858,028	+		DDA3937_RS08205	0.73	-1.3
1,858,028	+		DDA3937_RS08205	0.73	-1.2
1,858,029	-		DDA3937_RS08205	0.73	-0.6
1,858,059	+		DDA3937_RS08205	0.77	-1.0
1,858,098	+		DDA3937_RS08205	0.81	-0.5
1,858,098	+		DDA3937_RS08205	0.81	+0.5
1,858,099	-		DDA3937_RS08205	0.81	+0.0
1,858,102	-				-1.1
1,858,126	+		DDA3937_RS08205	0.84	-0.1
1,858,126	+		DDA3937_RS08205	0.84	+0.3
1,858,126	+				+0.2
1,858,127	-		DDA3937_RS08205	0.84	+3.1
1,858,127	-		DDA3937_RS08205	0.84	-1.8
1,858,138	+		DDA3937_RS08205	0.85	-2.8
1,858,216	+				-1.0
1,858,216	+				-1.7
1,858,216	+				-0.9
1,858,252	+				+2.3
1,858,278	+				-2.3
1,858,278	+				+0.3
1,858,285	+				-1.1
1,858,285	+				+0.9
1,858,285	+				-0.4
1,858,286	-				+0.5
1,858,286	-				-0.7
1,858,286	-				-0.1
1,858,293	-				-1.8
1,858,300	+				-0.5
1,858,301	-				-0.1
1,858,301	-				-0.4
1,858,301	-				-3.4
1,858,301	-				+0.7
1,858,317	+				+0.6
1,858,318	-				-1.6
1,858,318	-				-0.4
1,858,341	+				+0.3
1,858,341	+				+1.3
1,858,342	-				+0.9
1,858,346	+				+0.0
1,858,347	-				-2.6
1,858,376	+				-0.7
1,858,405	+				-0.0
1,858,416	+				-0.3
1,858,416	+				+1.7
1,858,416	+				+1.5
1,858,416	+				-0.8
1,858,416	+				-1.1
1,858,417	-				+0.2
1,858,417	-				+0.1
1,858,417	-				-0.2
1,858,417	-				-1.9
1,858,417	-				-0.9
1,858,425	+				-0.6
1,858,450	-				+0.2
1,858,450	-				-0.0
1,858,472	+				-1.8
1,858,472	+				-0.5
1,858,473	-				-1.6
1,858,473	-				+0.3
1,858,487	-				-1.1
1,858,498	+				-1.1
1,858,518	-				-0.5
1,858,717	+		DDA3937_RS08210	0.19	-0.1
1,858,717	+		DDA3937_RS08210	0.19	-0.4
1,858,718	-		DDA3937_RS08210	0.19	+0.5
1,858,718	-		DDA3937_RS08210	0.19	+0.1
1,858,718	-		DDA3937_RS08210	0.19	+1.1
1,858,807	-		DDA3937_RS08210	0.29	+0.2
1,858,913	+		DDA3937_RS08210	0.42	-0.8
1,858,913	+				+0.3
1,858,913	+		DDA3937_RS08210	0.42	-2.6
1,858,913	+		DDA3937_RS08210	0.42	-2.0
1,858,913	+		DDA3937_RS08210	0.42	-0.4
1,858,913	+		DDA3937_RS08210	0.42	+0.7
1,858,914	-		DDA3937_RS08210	0.42	+0.1
1,858,914	-		DDA3937_RS08210	0.42	+0.6
1,858,914	-		DDA3937_RS08210	0.42	-0.6
1,858,922	-		DDA3937_RS08210	0.43	+0.3
1,858,922	-		DDA3937_RS08210	0.43	+0.2
1,858,922	-		DDA3937_RS08210	0.43	+0.0
1,858,958	-		DDA3937_RS08210	0.47	-0.9
1,858,958	-		DDA3937_RS08210	0.47	+0.1
1,858,970	+		DDA3937_RS08210	0.49	-2.7
1,859,032	+		DDA3937_RS08210	0.56	-1.5
1,859,032	+		DDA3937_RS08210	0.56	-1.8
1,859,032	+		DDA3937_RS08210	0.56	-1.1
1,859,033	-		DDA3937_RS08210	0.56	-1.6
1,859,119	+		DDA3937_RS08210	0.67	+0.4
1,859,119	+		DDA3937_RS08210	0.67	-0.3
1,859,119	+		DDA3937_RS08210	0.67	+0.9
1,859,119	+		DDA3937_RS08210	0.67	+0.7
1,859,120	-		DDA3937_RS08210	0.67	-0.6