Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07805

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
1,761,848	+		DDA3937_RS07800	0.29	+2.3
1,761,848	+		DDA3937_RS07800	0.29	+2.2
1,761,849	-		DDA3937_RS07800	0.29	+1.3
1,761,849	-		DDA3937_RS07800	0.29	-2.0
1,761,987	+		DDA3937_RS07800	0.42	+1.3
1,761,987	+		DDA3937_RS07800	0.42	-0.9
1,761,987	+		DDA3937_RS07800	0.42	-1.7
1,761,987	+		DDA3937_RS07800	0.42	-1.6
1,761,987	+		DDA3937_RS07800	0.42	+1.1
1,761,987	+		DDA3937_RS07800	0.42	+0.6
1,761,988	-		DDA3937_RS07800	0.42	+0.4
1,761,988	-		DDA3937_RS07800	0.42	-0.9
1,761,988	-		DDA3937_RS07800	0.42	-1.7
1,761,988	-		DDA3937_RS07800	0.42	-0.9
1,761,988	-				-0.1
1,761,990	+		DDA3937_RS07800	0.43	-0.6
1,761,990	+		DDA3937_RS07800	0.43	-0.6
1,761,991	-		DDA3937_RS07800	0.43	-0.4
1,761,991	-		DDA3937_RS07800	0.43	-0.7
1,761,991	-		DDA3937_RS07800	0.43	+0.3
1,761,991	-		DDA3937_RS07800	0.43	+0.3
1,761,991	-		DDA3937_RS07800	0.43	+0.5
1,761,993	+		DDA3937_RS07800	0.43	+0.0
1,761,993	+		DDA3937_RS07800	0.43	-0.8
1,761,993	+		DDA3937_RS07800	0.43	+0.5
1,762,073	+		DDA3937_RS07800	0.50	+1.1
1,762,074	-		DDA3937_RS07800	0.50	-1.9
1,762,205	+		DDA3937_RS07800	0.63	-0.2
1,762,287	+		DDA3937_RS07800	0.71	+0.7
1,762,288	-		DDA3937_RS07800	0.71	+0.0
1,762,288	-		DDA3937_RS07800	0.71	-2.4
1,762,288	-		DDA3937_RS07800	0.71	+1.6
1,762,383	+		DDA3937_RS07800	0.80	+0.2
1,762,384	-		DDA3937_RS07800	0.80	-3.0
1,762,571	+				+2.0
1,762,571	+				-2.4
1,762,571	+				-0.7
1,762,571	+				-0.4
1,762,572	-				-1.7
1,762,572	-				-0.5
1,762,581	+				+0.2
1,762,581	+				-0.9
1,762,582	-				-1.4
1,762,582	-				+1.0
1,762,582	-				-0.7
1,762,582	-				-1.4
1,762,582	-				+0.8
1,762,582	-				+0.1
1,762,596	+				-0.1
1,762,596	+				-3.4
1,762,597	-				-1.1
1,762,597	-				-0.4
1,762,597	-				-0.3
1,762,615	+				-0.5
1,762,616	-				-0.8
1,762,635	+				-1.4
1,762,659	+				-1.6
1,762,713	+				-1.4
1,762,713	+				-1.8
1,762,713	+				+0.5
1,762,714	-				-1.9
1,762,715	+				+0.4
1,762,715	+				-0.1
1,762,715	+				-1.7
1,762,716	-				-0.7
1,762,716	-				+0.4
1,762,727	+				-1.1
1,762,740	+				-2.3
1,762,741	-				-0.7
1,762,741	-				+0.8
1,762,741	-				-1.3
1,762,741	-				+1.1
1,762,768	-				-0.9
1,762,838	+				+1.8
1,762,914	+		DDA3937_RS07805	0.16	-2.3
1,762,914	+		DDA3937_RS07805	0.16	-2.4
1,762,915	-		DDA3937_RS07805	0.16	+1.4
1,762,932	+		DDA3937_RS07805	0.17	-1.4
1,762,932	+		DDA3937_RS07805	0.17	+0.1
1,762,983	-		DDA3937_RS07805	0.23	-1.2
1,763,035	+		DDA3937_RS07805	0.29	+0.5
1,763,035	+		DDA3937_RS07805	0.29	-2.3
1,763,035	+		DDA3937_RS07805	0.29	-1.4
1,763,045	+		DDA3937_RS07805	0.30	-1.9
1,763,045	+		DDA3937_RS07805	0.30	+0.3
1,763,046	-		DDA3937_RS07805	0.30	-0.7
1,763,046	-		DDA3937_RS07805	0.30	-0.5
1,763,193	+		DDA3937_RS07805	0.46	-1.0
1,763,194	-		DDA3937_RS07805	0.46	-2.5
1,763,231	+		DDA3937_RS07805	0.50	-0.9
1,763,232	-		DDA3937_RS07805	0.50	+0.4
1,763,255	+		DDA3937_RS07805	0.52	-1.2
1,763,256	-		DDA3937_RS07805	0.52	-0.2
1,763,256	-		DDA3937_RS07805	0.52	+1.2
1,763,353	+		DDA3937_RS07805	0.63	-0.4
1,763,354	-		DDA3937_RS07805	0.63	-0.3
1,763,380	+		DDA3937_RS07805	0.66	+0.8
1,763,399	+		DDA3937_RS07805	0.68	-0.4
1,763,399	+		DDA3937_RS07805	0.68	-0.7
1,763,400	-		DDA3937_RS07805	0.68	-0.5
1,763,636	+				-0.6
1,763,766	+				-1.4
1,763,792	+				-0.9
1,763,792	+				+0.9
1,763,792	+				-2.1
1,763,793	-				-0.8
1,763,851	+				-2.3
1,763,851	+				+1.2
1,763,851	+				-0.2
1,763,852	-				+0.2
1,763,852	-				-1.9
1,763,852	-				+0.9
1,763,852	-				+2.7
1,763,877	+				-0.8
1,763,877	+				+0.0
1,763,877	+				-2.1
1,763,878	-				+0.1
1,763,878	-				-1.4
1,763,878	-				-0.1
1,763,880	+				+0.4
1,763,880	+				-1.4
1,763,880	+				-1.9
1,763,880	+				+0.5
1,763,881	-				-1.7
1,763,881	-				-0.7
1,763,893	+				+1.3
1,763,958	+				-2.9
1,763,958	+				-0.8
1,763,958	+				+0.5
1,763,958	+				-2.4
1,763,958	+				-2.5
1,763,958	+				+1.9
1,763,958	+				+0.0
1,763,958	+				+0.3
1,763,959	-				-0.0
1,763,959	-				+0.7
1,763,959	-				-2.2
1,763,959	-				+0.6
1,763,959	-				+0.4
1,764,080	+		DDA3937_RS07810	0.20	-0.9
1,764,121	+		DDA3937_RS07810	0.24	-0.2
1,764,142	+		DDA3937_RS07810	0.26	+0.2
1,764,142	+				+1.3
1,764,142	+		DDA3937_RS07810	0.26	-0.7
1,764,142	+		DDA3937_RS07810	0.26	-1.5
1,764,143	-		DDA3937_RS07810	0.26	-1.0
1,764,143	-		DDA3937_RS07810	0.26	+1.3
1,764,223	+		DDA3937_RS07810	0.33	-0.6
1,764,239	-				-1.7
1,764,263	-		DDA3937_RS07810	0.37	+2.4
1,764,285	-		DDA3937_RS07810	0.39	+1.0
1,764,478	+		DDA3937_RS07810	0.57	-0.7
1,764,478	+		DDA3937_RS07810	0.57	-0.4
1,764,478	+		DDA3937_RS07810	0.57	+0.5
1,764,479	-		DDA3937_RS07810	0.57	-0.8
1,764,479	-		DDA3937_RS07810	0.57	+0.5
1,764,479	-		DDA3937_RS07810	0.57	+1.2
1,764,526	+		DDA3937_RS07810	0.61	+0.5
1,764,527	-				-1.1
1,764,527	-		DDA3937_RS07810	0.61	-0.3
1,764,527	-		DDA3937_RS07810	0.61	+0.4
1,764,527	-		DDA3937_RS07810	0.61	-1.4
1,764,527	-		DDA3937_RS07810	0.61	-0.2
1,764,527	-		DDA3937_RS07810	0.61	-0.0
1,764,527	-		DDA3937_RS07810	0.61	+0.0
1,764,592	+		DDA3937_RS07810	0.67	-0.0
1,764,592	+		DDA3937_RS07810	0.67	+1.2
1,764,651	+		DDA3937_RS07810	0.73	-0.6
1,764,652	-		DDA3937_RS07810	0.73	-0.5
1,764,652	-		DDA3937_RS07810	0.73	+3.9
1,764,656	+		DDA3937_RS07810	0.73	+0.4
1,764,656	+		DDA3937_RS07810	0.73	-0.8
1,764,657	-		DDA3937_RS07810	0.73	+1.9
1,764,657	-		DDA3937_RS07810	0.73	-1.1
1,764,662	-		DDA3937_RS07810	0.74	-0.3
1,764,671	-		DDA3937_RS07810	0.74	+0.2