Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05755

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS05750 and DDA3937_RS05755 are separated by 48 nucleotidesDDA3937_RS05755 and DDA3937_RS05760 are separated by 78 nucleotidesDDA3937_RS05760 and DDA3937_RS05765 are separated by 64 nucleotides DDA3937_RS05750: DDA3937_RS05750 - mechanosensitive channel MscK, at 1,285,109 to 1,288,492 _RS05750 DDA3937_RS05755: DDA3937_RS05755 - pleiotropic regulatory protein RsmS, at 1,288,541 to 1,288,723 _RS05755 DDA3937_RS05760: DDA3937_RS05760 - primosomal replication protein, at 1,288,802 to 1,289,335 _RS05760 DDA3937_RS05765: DDA3937_RS05765 - tRNA-(ms[2]io[6]A)-hydroxylase, at 1,289,400 to 1,290,170 _RS05765 Position (kb) 1288 1289Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1287.584 kb on + strand, within DDA3937_RS05750at 1287.585 kb on - strand, within DDA3937_RS05750at 1287.593 kb on - strand, within DDA3937_RS05750at 1287.612 kb on - strand, within DDA3937_RS05750at 1287.612 kb on - strand, within DDA3937_RS05750at 1287.699 kb on - strand, within DDA3937_RS05750at 1287.699 kb on - strand, within DDA3937_RS05750at 1287.699 kb on - strand, within DDA3937_RS05750at 1287.699 kb on - strand, within DDA3937_RS05750at 1287.699 kb on - strand, within DDA3937_RS05750at 1287.699 kb on - strand, within DDA3937_RS05750at 1287.699 kb on - strand, within DDA3937_RS05750at 1287.738 kb on + strand, within DDA3937_RS05750at 1287.738 kb on + strand, within DDA3937_RS05750at 1287.739 kb on - strand, within DDA3937_RS05750at 1287.739 kb on - strand, within DDA3937_RS05750at 1287.739 kb on - strand, within DDA3937_RS05750at 1287.776 kb on + strandat 1287.776 kb on + strand, within DDA3937_RS05750at 1287.776 kb on + strandat 1287.777 kb on - strand, within DDA3937_RS05750at 1287.777 kb on - strand, within DDA3937_RS05750at 1287.777 kb on - strandat 1287.800 kb on + strand, within DDA3937_RS05750at 1287.801 kb on - strand, within DDA3937_RS05750at 1287.801 kb on - strand, within DDA3937_RS05750at 1287.801 kb on - strand, within DDA3937_RS05750at 1287.801 kb on - strand, within DDA3937_RS05750at 1288.079 kb on - strandat 1288.079 kb on - strand, within DDA3937_RS05750at 1288.160 kb on + strandat 1288.248 kb on + strandat 1288.298 kb on + strandat 1288.298 kb on + strandat 1288.298 kb on + strandat 1288.298 kb on + strandat 1288.299 kb on - strandat 1288.325 kb on + strandat 1288.325 kb on + strandat 1288.325 kb on + strandat 1288.326 kb on - strandat 1288.326 kb on - strandat 1288.407 kb on + strandat 1288.407 kb on + strandat 1288.437 kb on + strandat 1288.447 kb on - strandat 1288.447 kb on - strandat 1288.495 kb on - strandat 1288.603 kb on - strand, within DDA3937_RS05755at 1288.614 kb on - strand, within DDA3937_RS05755at 1288.614 kb on - strand, within DDA3937_RS05755at 1288.649 kb on + strand, within DDA3937_RS05755at 1288.650 kb on - strand, within DDA3937_RS05755at 1288.668 kb on - strand, within DDA3937_RS05755at 1288.668 kb on - strand, within DDA3937_RS05755at 1288.668 kb on - strand, within DDA3937_RS05755at 1288.693 kb on + strand, within DDA3937_RS05755at 1288.694 kb on - strand, within DDA3937_RS05755at 1288.769 kb on + strandat 1288.769 kb on + strandat 1288.769 kb on + strandat 1288.769 kb on + strandat 1288.770 kb on - strandat 1288.779 kb on + strandat 1288.779 kb on + strandat 1288.983 kb on + strand, within DDA3937_RS05760at 1288.984 kb on - strand, within DDA3937_RS05760at 1288.992 kb on + strand, within DDA3937_RS05760at 1289.144 kb on + strand, within DDA3937_RS05760at 1289.144 kb on + strand, within DDA3937_RS05760at 1289.144 kb on + strand, within DDA3937_RS05760at 1289.144 kb on + strand, within DDA3937_RS05760at 1289.144 kb on + strand, within DDA3937_RS05760at 1289.144 kb on + strand, within DDA3937_RS05760at 1289.145 kb on - strand, within DDA3937_RS05760at 1289.145 kb on - strand, within DDA3937_RS05760at 1289.145 kb on - strand, within DDA3937_RS05760at 1289.145 kb on - strand, within DDA3937_RS05760at 1289.145 kb on - strand, within DDA3937_RS05760at 1289.145 kb on - strand, within DDA3937_RS05760at 1289.148 kb on + strand, within DDA3937_RS05760at 1289.148 kb on + strandat 1289.148 kb on + strand, within DDA3937_RS05760at 1289.148 kb on + strand, within DDA3937_RS05760at 1289.148 kb on + strand, within DDA3937_RS05760at 1289.148 kb on + strand, within DDA3937_RS05760at 1289.148 kb on + strand, within DDA3937_RS05760at 1289.148 kb on + strand, within DDA3937_RS05760at 1289.148 kb on + strand, within DDA3937_RS05760at 1289.148 kb on + strand, within DDA3937_RS05760at 1289.149 kb on - strand, within DDA3937_RS05760at 1289.149 kb on - strand, within DDA3937_RS05760at 1289.149 kb on - strand, within DDA3937_RS05760at 1289.149 kb on - strand, within DDA3937_RS05760at 1289.149 kb on - strand, within DDA3937_RS05760at 1289.149 kb on - strand, within DDA3937_RS05760at 1289.149 kb on - strand, within DDA3937_RS05760at 1289.149 kb on - strand, within DDA3937_RS05760at 1289.149 kb on - strand, within DDA3937_RS05760at 1289.166 kb on + strand, within DDA3937_RS05760at 1289.166 kb on + strand, within DDA3937_RS05760at 1289.166 kb on + strand, within DDA3937_RS05760at 1289.166 kb on + strand, within DDA3937_RS05760at 1289.166 kb on + strand, within DDA3937_RS05760at 1289.167 kb on - strand, within DDA3937_RS05760at 1289.170 kb on + strand, within DDA3937_RS05760at 1289.170 kb on + strand, within DDA3937_RS05760at 1289.170 kb on + strand, within DDA3937_RS05760at 1289.170 kb on + strand, within DDA3937_RS05760at 1289.170 kb on + strand, within DDA3937_RS05760at 1289.170 kb on + strand, within DDA3937_RS05760at 1289.170 kb on + strand, within DDA3937_RS05760at 1289.171 kb on - strand, within DDA3937_RS05760at 1289.171 kb on - strand, within DDA3937_RS05760at 1289.171 kb on - strand, within DDA3937_RS05760at 1289.171 kb on - strand, within DDA3937_RS05760at 1289.171 kb on - strand, within DDA3937_RS05760at 1289.191 kb on - strand, within DDA3937_RS05760at 1289.290 kb on + strandat 1289.369 kb on + strandat 1289.369 kb on + strandat 1289.370 kb on - strandat 1289.507 kb on + strand, within DDA3937_RS05765at 1289.508 kb on - strand, within DDA3937_RS05765at 1289.508 kb on - strand, within DDA3937_RS05765at 1289.508 kb on - strand, within DDA3937_RS05765at 1289.508 kb on - strand, within DDA3937_RS05765at 1289.542 kb on + strand, within DDA3937_RS05765at 1289.552 kb on - strand, within DDA3937_RS05765at 1289.708 kb on + strand, within DDA3937_RS05765at 1289.708 kb on + strand, within DDA3937_RS05765at 1289.708 kb on + strand, within DDA3937_RS05765at 1289.709 kb on - strand, within DDA3937_RS05765

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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1,287,584 + DDA3937_RS05750 0.73 -0.1
1,287,585 - DDA3937_RS05750 0.73 -0.4
1,287,593 - DDA3937_RS05750 0.73 -1.7
1,287,612 - DDA3937_RS05750 0.74 -1.4
1,287,612 - DDA3937_RS05750 0.74 +0.7
1,287,699 - DDA3937_RS05750 0.77 -1.3
1,287,699 - DDA3937_RS05750 0.77 -0.4
1,287,699 - DDA3937_RS05750 0.77 -0.0
1,287,699 - DDA3937_RS05750 0.77 -0.1
1,287,699 - DDA3937_RS05750 0.77 +0.2
1,287,699 - DDA3937_RS05750 0.77 +0.3
1,287,699 - DDA3937_RS05750 0.77 -0.4
1,287,738 + DDA3937_RS05750 0.78 -0.1
1,287,738 + DDA3937_RS05750 0.78 +1.0
1,287,739 - DDA3937_RS05750 0.78 -0.0
1,287,739 - DDA3937_RS05750 0.78 -0.2
1,287,739 - DDA3937_RS05750 0.78 +2.7
1,287,776 + +0.2
1,287,776 + DDA3937_RS05750 0.79 +0.2
1,287,776 + -0.4
1,287,777 - DDA3937_RS05750 0.79 -0.8
1,287,777 - DDA3937_RS05750 0.79 -1.1
1,287,777 - -1.2
1,287,800 + DDA3937_RS05750 0.80 -0.5
1,287,801 - DDA3937_RS05750 0.80 -1.2
1,287,801 - DDA3937_RS05750 0.80 -1.7
1,287,801 - DDA3937_RS05750 0.80 +1.7
1,287,801 - DDA3937_RS05750 0.80 -1.4
1,288,079 - -0.8
1,288,079 - DDA3937_RS05750 0.88 +1.0
1,288,160 + -1.4
1,288,248 + +0.4
1,288,298 + -0.0
1,288,298 + +0.2
1,288,298 + -0.1
1,288,298 + -0.4
1,288,299 - -0.2
1,288,325 + -1.1
1,288,325 + +0.9
1,288,325 + -1.4
1,288,326 - +1.4
1,288,326 - -1.4
1,288,407 + -0.2
1,288,407 + -0.8
1,288,437 + -1.5
1,288,447 - +0.4
1,288,447 - +0.0
1,288,495 - +0.2
1,288,603 - DDA3937_RS05755 0.34 -1.5
1,288,614 - DDA3937_RS05755 0.40 -1.3
1,288,614 - DDA3937_RS05755 0.40 +0.7
1,288,649 + DDA3937_RS05755 0.59 -2.9
1,288,650 - DDA3937_RS05755 0.60 -2.4
1,288,668 - DDA3937_RS05755 0.69 -2.0
1,288,668 - DDA3937_RS05755 0.69 -0.3
1,288,668 - DDA3937_RS05755 0.69 -0.1
1,288,693 + DDA3937_RS05755 0.83 -2.8
1,288,694 - DDA3937_RS05755 0.84 -1.5
1,288,769 + -2.0
1,288,769 + -2.5
1,288,769 + -2.3
1,288,769 + -1.3
1,288,770 - +0.3
1,288,779 + -0.3
1,288,779 + +1.0
1,288,983 + DDA3937_RS05760 0.34 -1.3
1,288,984 - DDA3937_RS05760 0.34 +0.3
1,288,992 + DDA3937_RS05760 0.36 +1.3
1,289,144 + DDA3937_RS05760 0.64 -0.0
1,289,144 + DDA3937_RS05760 0.64 +0.3
1,289,144 + DDA3937_RS05760 0.64 +0.2
1,289,144 + DDA3937_RS05760 0.64 +0.6
1,289,144 + DDA3937_RS05760 0.64 -0.6
1,289,144 + DDA3937_RS05760 0.64 +0.4
1,289,145 - DDA3937_RS05760 0.64 -0.2
1,289,145 - DDA3937_RS05760 0.64 +0.9
1,289,145 - DDA3937_RS05760 0.64 -0.0
1,289,145 - DDA3937_RS05760 0.64 +0.0
1,289,145 - DDA3937_RS05760 0.64 +0.3
1,289,145 - DDA3937_RS05760 0.64 -0.2
1,289,148 + DDA3937_RS05760 0.65 -1.5
1,289,148 + -1.2
1,289,148 + DDA3937_RS05760 0.65 -0.2
1,289,148 + DDA3937_RS05760 0.65 -1.3
1,289,148 + DDA3937_RS05760 0.65 +1.2
1,289,148 + DDA3937_RS05760 0.65 -0.8
1,289,148 + DDA3937_RS05760 0.65 -1.8
1,289,148 + DDA3937_RS05760 0.65 +0.1
1,289,148 + DDA3937_RS05760 0.65 +0.8
1,289,148 + DDA3937_RS05760 0.65 +0.7
1,289,149 - DDA3937_RS05760 0.65 +0.2
1,289,149 - DDA3937_RS05760 0.65 -2.8
1,289,149 - DDA3937_RS05760 0.65 -0.2
1,289,149 - DDA3937_RS05760 0.65 -0.3
1,289,149 - DDA3937_RS05760 0.65 +0.2
1,289,149 - DDA3937_RS05760 0.65 -0.8
1,289,149 - DDA3937_RS05760 0.65 -0.0
1,289,149 - DDA3937_RS05760 0.65 +0.9
1,289,149 - DDA3937_RS05760 0.65 -0.2
1,289,166 + DDA3937_RS05760 0.68 -0.8
1,289,166 + DDA3937_RS05760 0.68 -1.9
1,289,166 + DDA3937_RS05760 0.68 -0.1
1,289,166 + DDA3937_RS05760 0.68 -0.4
1,289,166 + DDA3937_RS05760 0.68 -1.4
1,289,167 - DDA3937_RS05760 0.68 -0.3
1,289,170 + DDA3937_RS05760 0.69 -0.2
1,289,170 + DDA3937_RS05760 0.69 +0.0
1,289,170 + DDA3937_RS05760 0.69 +0.0
1,289,170 + DDA3937_RS05760 0.69 -0.3
1,289,170 + DDA3937_RS05760 0.69 -1.1
1,289,170 + DDA3937_RS05760 0.69 +0.3
1,289,170 + DDA3937_RS05760 0.69 +0.6
1,289,171 - DDA3937_RS05760 0.69 -0.1
1,289,171 - DDA3937_RS05760 0.69 -2.0
1,289,171 - DDA3937_RS05760 0.69 +0.1
1,289,171 - DDA3937_RS05760 0.69 +0.0
1,289,171 - DDA3937_RS05760 0.69 +1.6
1,289,191 - DDA3937_RS05760 0.73 -1.0
1,289,290 + +4.1
1,289,369 + -1.0
1,289,369 + +1.2
1,289,370 - -1.1
1,289,507 + DDA3937_RS05765 0.14 +0.7
1,289,508 - DDA3937_RS05765 0.14 -0.7
1,289,508 - DDA3937_RS05765 0.14 +1.3
1,289,508 - DDA3937_RS05765 0.14 -0.3
1,289,508 - DDA3937_RS05765 0.14 -1.1
1,289,542 + DDA3937_RS05765 0.18 -1.4
1,289,552 - DDA3937_RS05765 0.20 +0.4
1,289,708 + DDA3937_RS05765 0.40 -0.4
1,289,708 + DDA3937_RS05765 0.40 -1.0
1,289,708 + DDA3937_RS05765 0.40 -0.8
1,289,709 - DDA3937_RS05765 0.40 +0.9

Or see this region's nucleotide sequence