Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05055

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS05050 and DDA3937_RS05055 are separated by 113 nucleotidesDDA3937_RS05055 and DDA3937_RS05060 are separated by 1 nucleotides DDA3937_RS05050: DDA3937_RS05050 - transcriptional regulator GcvA, at 1,128,785 to 1,129,711 _RS05050 DDA3937_RS05055: DDA3937_RS05055 - DUF423 domain-containing protein, at 1,129,825 to 1,130,211 _RS05055 DDA3937_RS05060: DDA3937_RS05060 - 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM, at 1,130,213 to 1,131,313 _RS05060 Position (kb) 1129 1130 1131Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1128.873 kb on + strandat 1128.874 kb on - strandat 1129.003 kb on + strand, within DDA3937_RS05050at 1129.143 kb on - strand, within DDA3937_RS05050at 1129.162 kb on + strand, within DDA3937_RS05050at 1129.162 kb on + strand, within DDA3937_RS05050at 1129.163 kb on - strand, within DDA3937_RS05050at 1129.266 kb on - strand, within DDA3937_RS05050at 1129.274 kb on + strand, within DDA3937_RS05050at 1129.274 kb on + strand, within DDA3937_RS05050at 1129.351 kb on + strand, within DDA3937_RS05050at 1129.352 kb on - strand, within DDA3937_RS05050at 1129.391 kb on + strand, within DDA3937_RS05050at 1129.391 kb on + strand, within DDA3937_RS05050at 1129.392 kb on - strandat 1129.420 kb on + strand, within DDA3937_RS05050at 1129.421 kb on - strand, within DDA3937_RS05050at 1129.564 kb on - strand, within DDA3937_RS05050at 1129.564 kb on - strand, within DDA3937_RS05050at 1129.564 kb on - strand, within DDA3937_RS05050at 1129.814 kb on + strandat 1129.815 kb on - strandat 1129.815 kb on - strandat 1129.848 kb on - strandat 1129.848 kb on - strandat 1129.848 kb on - strandat 1129.871 kb on + strand, within DDA3937_RS05055at 1129.871 kb on + strand, within DDA3937_RS05055at 1129.871 kb on + strand, within DDA3937_RS05055at 1129.871 kb on + strand, within DDA3937_RS05055at 1129.871 kb on + strand, within DDA3937_RS05055at 1129.871 kb on + strand, within DDA3937_RS05055at 1129.871 kb on + strandat 1129.871 kb on + strand, within DDA3937_RS05055at 1129.871 kb on + strand, within DDA3937_RS05055at 1129.871 kb on + strand, within DDA3937_RS05055at 1129.871 kb on + strand, within DDA3937_RS05055at 1129.872 kb on - strand, within DDA3937_RS05055at 1129.872 kb on - strand, within DDA3937_RS05055at 1129.872 kb on - strand, within DDA3937_RS05055at 1129.872 kb on - strand, within DDA3937_RS05055at 1129.872 kb on - strand, within DDA3937_RS05055at 1129.872 kb on - strand, within DDA3937_RS05055at 1129.872 kb on - strand, within DDA3937_RS05055at 1129.872 kb on - strand, within DDA3937_RS05055at 1129.872 kb on - strand, within DDA3937_RS05055at 1129.872 kb on - strand, within DDA3937_RS05055at 1129.872 kb on - strand, within DDA3937_RS05055at 1129.872 kb on - strand, within DDA3937_RS05055at 1129.872 kb on - strand, within DDA3937_RS05055at 1129.872 kb on - strand, within DDA3937_RS05055at 1129.872 kb on - strand, within DDA3937_RS05055at 1129.872 kb on - strand, within DDA3937_RS05055at 1129.873 kb on + strand, within DDA3937_RS05055at 1129.873 kb on + strand, within DDA3937_RS05055at 1129.873 kb on + strand, within DDA3937_RS05055at 1129.873 kb on + strand, within DDA3937_RS05055at 1129.874 kb on - strand, within DDA3937_RS05055at 1129.874 kb on - strand, within DDA3937_RS05055at 1129.874 kb on - strand, within DDA3937_RS05055at 1129.874 kb on - strand, within DDA3937_RS05055at 1129.874 kb on - strand, within DDA3937_RS05055at 1129.960 kb on + strand, within DDA3937_RS05055at 1129.987 kb on - strand, within DDA3937_RS05055at 1130.061 kb on + strand, within DDA3937_RS05055at 1130.087 kb on - strand, within DDA3937_RS05055at 1130.120 kb on + strand, within DDA3937_RS05055at 1130.120 kb on + strand, within DDA3937_RS05055at 1130.121 kb on - strand, within DDA3937_RS05055at 1130.121 kb on - strand, within DDA3937_RS05055at 1130.121 kb on - strandat 1130.121 kb on - strand, within DDA3937_RS05055at 1130.121 kb on - strand, within DDA3937_RS05055at 1130.121 kb on - strand, within DDA3937_RS05055at 1130.169 kb on - strand, within DDA3937_RS05055at 1130.174 kb on + strandat 1130.175 kb on - strandat 1130.187 kb on - strandat 1130.192 kb on + strandat 1130.209 kb on + strandat 1130.209 kb on + strandat 1130.210 kb on - strandat 1130.210 kb on - strandat 1130.210 kb on - strandat 1130.210 kb on - strandat 1130.210 kb on - strandat 1130.219 kb on - strandat 1130.219 kb on - strandat 1130.219 kb on - strandat 1130.232 kb on - strandat 1130.291 kb on + strandat 1130.291 kb on + strandat 1130.292 kb on - strandat 1130.292 kb on - strandat 1130.292 kb on - strandat 1130.293 kb on + strandat 1130.293 kb on + strandat 1130.293 kb on + strandat 1130.293 kb on + strandat 1130.294 kb on - strandat 1130.294 kb on - strandat 1130.294 kb on - strandat 1130.294 kb on - strandat 1130.294 kb on - strandat 1130.301 kb on - strandat 1130.333 kb on + strand, within DDA3937_RS05060at 1130.334 kb on - strand, within DDA3937_RS05060at 1130.389 kb on - strand, within DDA3937_RS05060at 1130.389 kb on - strand, within DDA3937_RS05060at 1130.389 kb on - strand, within DDA3937_RS05060at 1130.427 kb on + strand, within DDA3937_RS05060at 1130.428 kb on - strand, within DDA3937_RS05060at 1130.661 kb on + strand, within DDA3937_RS05060at 1130.661 kb on + strand, within DDA3937_RS05060at 1130.661 kb on + strand, within DDA3937_RS05060at 1130.661 kb on + strand, within DDA3937_RS05060at 1130.661 kb on + strand, within DDA3937_RS05060at 1130.661 kb on + strand, within DDA3937_RS05060at 1130.661 kb on + strand, within DDA3937_RS05060at 1130.661 kb on + strand, within DDA3937_RS05060at 1130.661 kb on + strand, within DDA3937_RS05060at 1130.662 kb on - strand, within DDA3937_RS05060at 1130.662 kb on - strand, within DDA3937_RS05060at 1130.662 kb on - strand, within DDA3937_RS05060at 1130.662 kb on - strand, within DDA3937_RS05060at 1130.662 kb on - strand, within DDA3937_RS05060at 1130.687 kb on + strand, within DDA3937_RS05060at 1130.687 kb on + strand, within DDA3937_RS05060at 1130.687 kb on + strand, within DDA3937_RS05060at 1130.688 kb on - strand, within DDA3937_RS05060at 1130.688 kb on - strand, within DDA3937_RS05060at 1130.696 kb on + strand, within DDA3937_RS05060at 1130.702 kb on + strand, within DDA3937_RS05060at 1130.703 kb on - strand, within DDA3937_RS05060at 1130.703 kb on - strand, within DDA3937_RS05060at 1130.711 kb on - strand, within DDA3937_RS05060at 1130.726 kb on + strand, within DDA3937_RS05060at 1130.726 kb on + strand, within DDA3937_RS05060at 1130.726 kb on + strand, within DDA3937_RS05060at 1130.726 kb on + strand, within DDA3937_RS05060at 1130.726 kb on + strand, within DDA3937_RS05060at 1130.726 kb on + strand, within DDA3937_RS05060at 1130.726 kb on + strand, within DDA3937_RS05060at 1130.726 kb on + strand, within DDA3937_RS05060at 1130.727 kb on - strand, within DDA3937_RS05060at 1130.727 kb on - strand, within DDA3937_RS05060at 1130.727 kb on - strand, within DDA3937_RS05060at 1130.727 kb on - strand, within DDA3937_RS05060at 1130.727 kb on - strand, within DDA3937_RS05060at 1130.727 kb on - strand, within DDA3937_RS05060at 1130.727 kb on - strand, within DDA3937_RS05060at 1130.727 kb on - strand, within DDA3937_RS05060at 1130.727 kb on - strand, within DDA3937_RS05060at 1130.727 kb on - strand, within DDA3937_RS05060at 1130.727 kb on - strand, within DDA3937_RS05060at 1130.727 kb on - strand, within DDA3937_RS05060at 1130.728 kb on + strand, within DDA3937_RS05060at 1130.803 kb on + strand, within DDA3937_RS05060at 1130.803 kb on + strand, within DDA3937_RS05060at 1130.803 kb on + strand, within DDA3937_RS05060at 1130.804 kb on - strand, within DDA3937_RS05060at 1130.852 kb on + strand, within DDA3937_RS05060at 1130.852 kb on + strand, within DDA3937_RS05060at 1130.853 kb on - strand, within DDA3937_RS05060at 1130.853 kb on - strand, within DDA3937_RS05060at 1130.853 kb on - strand, within DDA3937_RS05060at 1130.853 kb on - strand, within DDA3937_RS05060at 1130.891 kb on + strand, within DDA3937_RS05060at 1130.891 kb on + strand, within DDA3937_RS05060at 1130.891 kb on + strand, within DDA3937_RS05060at 1130.891 kb on + strand, within DDA3937_RS05060at 1130.892 kb on - strand, within DDA3937_RS05060at 1130.892 kb on - strand, within DDA3937_RS05060at 1130.892 kb on - strandat 1130.911 kb on + strand, within DDA3937_RS05060at 1130.912 kb on - strand, within DDA3937_RS05060at 1130.912 kb on - strand, within DDA3937_RS05060at 1130.912 kb on - strand, within DDA3937_RS05060at 1130.912 kb on - strand, within DDA3937_RS05060at 1131.022 kb on + strand, within DDA3937_RS05060at 1131.022 kb on + strand, within DDA3937_RS05060at 1131.022 kb on + strand, within DDA3937_RS05060at 1131.023 kb on - strand, within DDA3937_RS05060at 1131.023 kb on - strand, within DDA3937_RS05060at 1131.023 kb on - strand, within DDA3937_RS05060at 1131.023 kb on - strand, within DDA3937_RS05060at 1131.026 kb on + strand, within DDA3937_RS05060at 1131.026 kb on + strand, within DDA3937_RS05060at 1131.026 kb on + strand, within DDA3937_RS05060at 1131.043 kb on + strand, within DDA3937_RS05060at 1131.044 kb on - strand, within DDA3937_RS05060at 1131.062 kb on - strand, within DDA3937_RS05060at 1131.062 kb on - strand, within DDA3937_RS05060

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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1,128,873 + +0.1
1,128,874 - -0.2
1,129,003 + DDA3937_RS05050 0.24 -1.8
1,129,143 - DDA3937_RS05050 0.39 -0.8
1,129,162 + DDA3937_RS05050 0.41 +0.6
1,129,162 + DDA3937_RS05050 0.41 -0.3
1,129,163 - DDA3937_RS05050 0.41 +2.2
1,129,266 - DDA3937_RS05050 0.52 -1.1
1,129,274 + DDA3937_RS05050 0.53 -0.0
1,129,274 + DDA3937_RS05050 0.53 -0.4
1,129,351 + DDA3937_RS05050 0.61 +0.0
1,129,352 - DDA3937_RS05050 0.61 -1.5
1,129,391 + DDA3937_RS05050 0.65 -2.0
1,129,391 + DDA3937_RS05050 0.65 -1.6
1,129,392 - +0.2
1,129,420 + DDA3937_RS05050 0.69 +0.9
1,129,421 - DDA3937_RS05050 0.69 -1.4
1,129,564 - DDA3937_RS05050 0.84 -1.0
1,129,564 - DDA3937_RS05050 0.84 +0.4
1,129,564 - DDA3937_RS05050 0.84 -0.2
1,129,814 + -0.7
1,129,815 - +1.0
1,129,815 - +0.2
1,129,848 - -1.8
1,129,848 - +0.6
1,129,848 - +0.2
1,129,871 + DDA3937_RS05055 0.12 -0.3
1,129,871 + DDA3937_RS05055 0.12 +0.2
1,129,871 + DDA3937_RS05055 0.12 +0.2
1,129,871 + DDA3937_RS05055 0.12 -0.0
1,129,871 + DDA3937_RS05055 0.12 -2.5
1,129,871 + DDA3937_RS05055 0.12 +1.2
1,129,871 + -1.1
1,129,871 + DDA3937_RS05055 0.12 -0.2
1,129,871 + DDA3937_RS05055 0.12 -1.6
1,129,871 + DDA3937_RS05055 0.12 +0.3
1,129,871 + DDA3937_RS05055 0.12 -1.5
1,129,872 - DDA3937_RS05055 0.12 +0.1
1,129,872 - DDA3937_RS05055 0.12 -1.0
1,129,872 - DDA3937_RS05055 0.12 +0.2
1,129,872 - DDA3937_RS05055 0.12 +0.2
1,129,872 - DDA3937_RS05055 0.12 -0.0
1,129,872 - DDA3937_RS05055 0.12 -1.8
1,129,872 - DDA3937_RS05055 0.12 -0.4
1,129,872 - DDA3937_RS05055 0.12 -1.1
1,129,872 - DDA3937_RS05055 0.12 +0.1
1,129,872 - DDA3937_RS05055 0.12 +0.5
1,129,872 - DDA3937_RS05055 0.12 +0.2
1,129,872 - DDA3937_RS05055 0.12 -0.1
1,129,872 - DDA3937_RS05055 0.12 -0.3
1,129,872 - DDA3937_RS05055 0.12 -1.1
1,129,872 - DDA3937_RS05055 0.12 +3.1
1,129,872 - DDA3937_RS05055 0.12 +0.6
1,129,873 + DDA3937_RS05055 0.12 +0.4
1,129,873 + DDA3937_RS05055 0.12 -0.8
1,129,873 + DDA3937_RS05055 0.12 -0.9
1,129,873 + DDA3937_RS05055 0.12 -1.6
1,129,874 - DDA3937_RS05055 0.13 -1.6
1,129,874 - DDA3937_RS05055 0.13 -0.5
1,129,874 - DDA3937_RS05055 0.13 -0.0
1,129,874 - DDA3937_RS05055 0.13 +0.2
1,129,874 - DDA3937_RS05055 0.13 -0.1
1,129,960 + DDA3937_RS05055 0.35 +0.4
1,129,987 - DDA3937_RS05055 0.42 -0.8
1,130,061 + DDA3937_RS05055 0.61 +0.2
1,130,087 - DDA3937_RS05055 0.68 -1.0
1,130,120 + DDA3937_RS05055 0.76 -1.6
1,130,120 + DDA3937_RS05055 0.76 +4.3
1,130,121 - DDA3937_RS05055 0.76 -0.4
1,130,121 - DDA3937_RS05055 0.76 +0.2
1,130,121 - -0.4
1,130,121 - DDA3937_RS05055 0.76 -3.1
1,130,121 - DDA3937_RS05055 0.76 -0.3
1,130,121 - DDA3937_RS05055 0.76 -0.0
1,130,169 - DDA3937_RS05055 0.89 -0.8
1,130,174 + -0.5
1,130,175 - -0.1
1,130,187 - +1.8
1,130,192 + +2.1
1,130,209 + -1.3
1,130,209 + -1.4
1,130,210 - +0.0
1,130,210 - +0.4
1,130,210 - -0.5
1,130,210 - -0.8
1,130,210 - +4.6
1,130,219 - +0.4
1,130,219 - +0.4
1,130,219 - -0.2
1,130,232 - -1.0
1,130,291 + +0.4
1,130,291 + -1.8
1,130,292 - -2.1
1,130,292 - +1.0
1,130,292 - -2.1
1,130,293 + +1.2
1,130,293 + -1.1
1,130,293 + -0.1
1,130,293 + +1.2
1,130,294 - -2.2
1,130,294 - -2.3
1,130,294 - -2.7
1,130,294 - -0.8
1,130,294 - +0.2
1,130,301 - -1.4
1,130,333 + DDA3937_RS05060 0.11 -0.2
1,130,334 - DDA3937_RS05060 0.11 +0.9
1,130,389 - DDA3937_RS05060 0.16 +0.2
1,130,389 - DDA3937_RS05060 0.16 -0.8
1,130,389 - DDA3937_RS05060 0.16 -0.4
1,130,427 + DDA3937_RS05060 0.19 -0.5
1,130,428 - DDA3937_RS05060 0.20 -2.1
1,130,661 + DDA3937_RS05060 0.41 -0.6
1,130,661 + DDA3937_RS05060 0.41 +0.5
1,130,661 + DDA3937_RS05060 0.41 +1.2
1,130,661 + DDA3937_RS05060 0.41 -0.1
1,130,661 + DDA3937_RS05060 0.41 -0.4
1,130,661 + DDA3937_RS05060 0.41 -1.5
1,130,661 + DDA3937_RS05060 0.41 +0.0
1,130,661 + DDA3937_RS05060 0.41 +0.4
1,130,661 + DDA3937_RS05060 0.41 +3.0
1,130,662 - DDA3937_RS05060 0.41 +0.2
1,130,662 - DDA3937_RS05060 0.41 -1.3
1,130,662 - DDA3937_RS05060 0.41 -0.4
1,130,662 - DDA3937_RS05060 0.41 -0.4
1,130,662 - DDA3937_RS05060 0.41 +0.9
1,130,687 + DDA3937_RS05060 0.43 -1.1
1,130,687 + DDA3937_RS05060 0.43 -1.4
1,130,687 + DDA3937_RS05060 0.43 -1.8
1,130,688 - DDA3937_RS05060 0.43 -2.0
1,130,688 - DDA3937_RS05060 0.43 +0.4
1,130,696 + DDA3937_RS05060 0.44 +0.2
1,130,702 + DDA3937_RS05060 0.44 -2.0
1,130,703 - DDA3937_RS05060 0.45 +1.7
1,130,703 - DDA3937_RS05060 0.45 +0.4
1,130,711 - DDA3937_RS05060 0.45 -0.1
1,130,726 + DDA3937_RS05060 0.47 +1.2
1,130,726 + DDA3937_RS05060 0.47 -0.4
1,130,726 + DDA3937_RS05060 0.47 +0.2
1,130,726 + DDA3937_RS05060 0.47 -0.9
1,130,726 + DDA3937_RS05060 0.47 -0.5
1,130,726 + DDA3937_RS05060 0.47 -2.0
1,130,726 + DDA3937_RS05060 0.47 -0.4
1,130,726 + DDA3937_RS05060 0.47 -0.3
1,130,727 - DDA3937_RS05060 0.47 +0.7
1,130,727 - DDA3937_RS05060 0.47 -0.4
1,130,727 - DDA3937_RS05060 0.47 -1.1
1,130,727 - DDA3937_RS05060 0.47 -0.9
1,130,727 - DDA3937_RS05060 0.47 -1.8
1,130,727 - DDA3937_RS05060 0.47 -2.0
1,130,727 - DDA3937_RS05060 0.47 -1.1
1,130,727 - DDA3937_RS05060 0.47 +0.2
1,130,727 - DDA3937_RS05060 0.47 +0.2
1,130,727 - DDA3937_RS05060 0.47 +2.0
1,130,727 - DDA3937_RS05060 0.47 +1.9
1,130,727 - DDA3937_RS05060 0.47 +1.0
1,130,728 + DDA3937_RS05060 0.47 -0.4
1,130,803 + DDA3937_RS05060 0.54 -0.6
1,130,803 + DDA3937_RS05060 0.54 +0.4
1,130,803 + DDA3937_RS05060 0.54 -1.6
1,130,804 - DDA3937_RS05060 0.54 +2.7
1,130,852 + DDA3937_RS05060 0.58 -0.2
1,130,852 + DDA3937_RS05060 0.58 -2.1
1,130,853 - DDA3937_RS05060 0.58 -1.6
1,130,853 - DDA3937_RS05060 0.58 +1.2
1,130,853 - DDA3937_RS05060 0.58 -0.3
1,130,853 - DDA3937_RS05060 0.58 +1.2
1,130,891 + DDA3937_RS05060 0.62 -2.6
1,130,891 + DDA3937_RS05060 0.62 -0.3
1,130,891 + DDA3937_RS05060 0.62 -0.5
1,130,891 + DDA3937_RS05060 0.62 -0.4
1,130,892 - DDA3937_RS05060 0.62 +0.4
1,130,892 - DDA3937_RS05060 0.62 -2.5
1,130,892 - -0.4
1,130,911 + DDA3937_RS05060 0.63 -0.6
1,130,912 - DDA3937_RS05060 0.63 +0.7
1,130,912 - DDA3937_RS05060 0.63 -0.0
1,130,912 - DDA3937_RS05060 0.63 -0.7
1,130,912 - DDA3937_RS05060 0.63 -0.9
1,131,022 + DDA3937_RS05060 0.73 -1.4
1,131,022 + DDA3937_RS05060 0.73 +0.4
1,131,022 + DDA3937_RS05060 0.73 +0.2
1,131,023 - DDA3937_RS05060 0.74 -2.1
1,131,023 - DDA3937_RS05060 0.74 +0.4
1,131,023 - DDA3937_RS05060 0.74 -2.1
1,131,023 - DDA3937_RS05060 0.74 -0.7
1,131,026 + DDA3937_RS05060 0.74 +0.2
1,131,026 + DDA3937_RS05060 0.74 -2.5
1,131,026 + DDA3937_RS05060 0.74 +0.3
1,131,043 + DDA3937_RS05060 0.75 -1.0
1,131,044 - DDA3937_RS05060 0.75 -1.3
1,131,062 - DDA3937_RS05060 0.77 -1.1
1,131,062 - DDA3937_RS05060 0.77 +0.2

Or see this region's nucleotide sequence