Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04395 and DDA3937_RS04400 are separated by 447 nucleotides DDA3937_RS04400 and DDA3937_RS21950 are separated by 121 nucleotides DDA3937_RS21950 and DDA3937_RS04405 are separated by 416 nucleotides
DDA3937_RS04395: DDA3937_RS04395 - RpoE-regulated lipoprotein, at 970,110 to 970,715
_RS04395
DDA3937_RS04400: DDA3937_RS04400 - glycosyltransferase, at 971,163 to 972,437
_RS04400
DDA3937_RS21950: DDA3937_RS21950 - helix-turn-helix domain-containing protein, at 972,559 to 972,846
_RS21950
DDA3937_RS04405: DDA3937_RS04405 - GNAT family N-acetyltransferase, at 973,263 to 973,676
_RS04405
Position (kb) 971
972
973 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 970.171 kb on + strand, within DDA3937_RS04395 at 970.171 kb on + strand, within DDA3937_RS04395 at 970.172 kb on - strand, within DDA3937_RS04395 at 970.326 kb on + strand, within DDA3937_RS04395 at 970.326 kb on + strand, within DDA3937_RS04395 at 970.370 kb on - strand, within DDA3937_RS04395 at 970.377 kb on + strand, within DDA3937_RS04395 at 970.377 kb on + strand, within DDA3937_RS04395 at 970.377 kb on + strand, within DDA3937_RS04395 at 970.378 kb on - strand, within DDA3937_RS04395 at 970.378 kb on - strand, within DDA3937_RS04395 at 970.592 kb on + strand, within DDA3937_RS04395 at 970.593 kb on - strand, within DDA3937_RS04395 at 970.605 kb on + strand, within DDA3937_RS04395 at 970.605 kb on + strand, within DDA3937_RS04395 at 970.605 kb on + strand, within DDA3937_RS04395 at 970.659 kb on - strand at 970.659 kb on - strand at 970.727 kb on - strand at 970.792 kb on + strand at 970.792 kb on + strand at 970.792 kb on + strand at 970.792 kb on + strand at 970.792 kb on + strand at 970.792 kb on + strand at 970.792 kb on + strand at 970.793 kb on - strand at 970.845 kb on + strand at 970.846 kb on - strand at 970.861 kb on - strand at 970.883 kb on + strand at 970.884 kb on - strand at 970.884 kb on - strand at 970.884 kb on - strand at 970.913 kb on + strand at 970.914 kb on - strand at 970.925 kb on - strand at 970.953 kb on + strand at 970.980 kb on - strand at 970.980 kb on - strand at 971.004 kb on + strand at 971.004 kb on + strand at 971.004 kb on + strand at 971.004 kb on + strand at 971.005 kb on - strand at 971.005 kb on - strand at 971.005 kb on - strand at 971.006 kb on + strand at 971.090 kb on + strand at 971.090 kb on + strand at 971.090 kb on + strand at 971.091 kb on - strand at 971.111 kb on - strand at 971.151 kb on + strand at 971.213 kb on + strand at 971.213 kb on + strand at 971.213 kb on + strand at 971.214 kb on - strand at 971.263 kb on + strand at 971.520 kb on + strand, within DDA3937_RS04400 at 971.616 kb on + strand, within DDA3937_RS04400 at 971.616 kb on + strand, within DDA3937_RS04400 at 971.617 kb on - strand, within DDA3937_RS04400 at 971.829 kb on + strand, within DDA3937_RS04400 at 971.857 kb on + strand, within DDA3937_RS04400 at 971.858 kb on - strand, within DDA3937_RS04400 at 972.176 kb on + strand, within DDA3937_RS04400 at 972.351 kb on - strand at 972.455 kb on + strand at 972.455 kb on + strand at 972.455 kb on + strand at 972.456 kb on - strand at 972.459 kb on + strand at 972.459 kb on + strand at 972.460 kb on - strand at 972.460 kb on - strand at 972.495 kb on - strand at 972.529 kb on + strand at 972.529 kb on + strand at 972.579 kb on + strand at 972.588 kb on + strand, within DDA3937_RS21950 at 972.622 kb on - strand, within DDA3937_RS21950 at 972.642 kb on - strand, within DDA3937_RS21950 at 972.677 kb on - strand, within DDA3937_RS21950 at 972.677 kb on - strand, within DDA3937_RS21950 at 972.719 kb on + strand, within DDA3937_RS21950 at 972.719 kb on + strand, within DDA3937_RS21950 at 972.719 kb on + strand, within DDA3937_RS21950 at 972.720 kb on - strand at 972.720 kb on - strand, within DDA3937_RS21950 at 972.720 kb on - strand, within DDA3937_RS21950 at 972.720 kb on - strand, within DDA3937_RS21950 at 972.776 kb on - strand, within DDA3937_RS21950 at 972.784 kb on - strand, within DDA3937_RS21950 at 972.839 kb on - strand at 972.841 kb on - strand at 972.847 kb on + strand at 972.848 kb on - strand at 972.848 kb on - strand at 972.858 kb on + strand at 972.859 kb on - strand at 972.897 kb on + strand at 972.921 kb on + strand at 972.922 kb on - strand at 972.922 kb on - strand at 972.985 kb on + strand at 973.016 kb on + strand at 973.027 kb on + strand at 973.043 kb on - strand at 973.044 kb on + strand at 973.056 kb on + strand at 973.097 kb on + strand at 973.101 kb on - strand at 973.152 kb on - strand at 973.160 kb on - strand at 973.251 kb on - strand at 973.260 kb on - strand at 973.260 kb on - strand at 973.308 kb on + strand, within DDA3937_RS04405 at 973.308 kb on + strand, within DDA3937_RS04405 at 973.309 kb on - strand, within DDA3937_RS04405 at 973.334 kb on + strand, within DDA3937_RS04405 at 973.358 kb on + strand, within DDA3937_RS04405
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 970,171 + DDA3937_RS04395 0.10 -0.2 970,171 + DDA3937_RS04395 0.10 -0.8 970,172 - DDA3937_RS04395 0.10 -0.0 970,326 + DDA3937_RS04395 0.36 +0.1 970,326 + DDA3937_RS04395 0.36 -1.0 970,370 - DDA3937_RS04395 0.43 +0.2 970,377 + DDA3937_RS04395 0.44 -0.3 970,377 + DDA3937_RS04395 0.44 -2.5 970,377 + DDA3937_RS04395 0.44 +0.6 970,378 - DDA3937_RS04395 0.44 -0.4 970,378 - DDA3937_RS04395 0.44 -0.3 970,592 + DDA3937_RS04395 0.80 +0.2 970,593 - DDA3937_RS04395 0.80 +1.0 970,605 + DDA3937_RS04395 0.82 -1.4 970,605 + DDA3937_RS04395 0.82 +0.8 970,605 + DDA3937_RS04395 0.82 +1.5 970,659 - -0.3 970,659 - +0.4 970,727 - -0.3 970,792 + +0.1 970,792 + +1.2 970,792 + +0.5 970,792 + +3.9 970,792 + -0.1 970,792 + -0.9 970,792 + +1.2 970,793 - -1.0 970,845 + +0.3 970,846 - -0.4 970,861 - +0.5 970,883 + -0.4 970,884 - -1.8 970,884 - -1.4 970,884 - -0.4 970,913 + -0.8 970,914 - +0.3 970,925 - -0.2 970,953 + -0.2 970,980 - -0.0 970,980 - +0.7 971,004 + +0.0 971,004 + -0.2 971,004 + -2.0 971,004 + -0.7 971,005 - -1.0 971,005 - +0.4 971,005 - +0.2 971,006 + -0.5 971,090 + +0.6 971,090 + -0.1 971,090 + -0.8 971,091 - +0.2 971,111 - -0.5 971,151 + -1.1 971,213 + -1.1 971,213 + +0.4 971,213 + +0.5 971,214 - -0.8 971,263 + +1.2 971,520 + DDA3937_RS04400 0.28 +0.2 971,616 + DDA3937_RS04400 0.36 +0.5 971,616 + DDA3937_RS04400 0.36 -0.4 971,617 - DDA3937_RS04400 0.36 +0.1 971,829 + DDA3937_RS04400 0.52 -1.7 971,857 + DDA3937_RS04400 0.54 -0.6 971,858 - DDA3937_RS04400 0.55 -1.4 972,176 + DDA3937_RS04400 0.79 -0.4 972,351 - -0.1 972,455 + -1.1 972,455 + -0.4 972,455 + -0.8 972,456 - -0.7 972,459 + +0.2 972,459 + -2.2 972,460 - +0.3 972,460 - -1.0 972,495 - -0.0 972,529 + -1.2 972,529 + -2.2 972,579 + +0.1 972,588 + DDA3937_RS21950 0.10 +1.1 972,622 - DDA3937_RS21950 0.22 +0.6 972,642 - DDA3937_RS21950 0.29 +0.4 972,677 - DDA3937_RS21950 0.41 -1.2 972,677 - DDA3937_RS21950 0.41 -0.1 972,719 + DDA3937_RS21950 0.56 +0.7 972,719 + DDA3937_RS21950 0.56 +0.1 972,719 + DDA3937_RS21950 0.56 +0.2 972,720 - +0.6 972,720 - DDA3937_RS21950 0.56 +0.1 972,720 - DDA3937_RS21950 0.56 -0.6 972,720 - DDA3937_RS21950 0.56 +0.3 972,776 - DDA3937_RS21950 0.75 -0.0 972,784 - DDA3937_RS21950 0.78 -0.3 972,839 - +0.5 972,841 - +0.0 972,847 + -1.6 972,848 - -1.2 972,848 - -0.9 972,858 + +1.5 972,859 - +1.6 972,897 + -1.6 972,921 + +0.6 972,922 - -0.4 972,922 - -0.1 972,985 + -0.8 973,016 + +1.4 973,027 + +0.1 973,043 - -0.2 973,044 + -1.0 973,056 + -0.7 973,097 + -1.1 973,101 - +1.2 973,152 - -1.9 973,160 - +3.8 973,251 - -0.4 973,260 - -0.4 973,260 - +0.4 973,308 + DDA3937_RS04405 0.11 +0.3 973,308 + DDA3937_RS04405 0.11 +2.1 973,309 - DDA3937_RS04405 0.11 -1.7 973,334 + DDA3937_RS04405 0.17 +0.4 973,358 + DDA3937_RS04405 0.23 +0.2
Or see this region's nucleotide sequence