Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01850 and DDA3937_RS01855 are separated by 193 nucleotides DDA3937_RS01855 and DDA3937_RS01860 are separated by 795 nucleotides
DDA3937_RS01850: DDA3937_RS01850 - carbohydrate porin, at 410,767 to 412,383
_RS01850
DDA3937_RS01855: DDA3937_RS01855 - aminoimidazole riboside kinase, at 412,577 to 413,500
_RS01855
DDA3937_RS01860: DDA3937_RS01860 - type I-E CRISPR-associated protein Cse1/CasA, at 414,296 to 415,804
_RS01860
Position (kb) 412
413
414 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 411.593 kb on + strand, within DDA3937_RS01850 at 411.593 kb on + strand, within DDA3937_RS01850 at 411.593 kb on + strand, within DDA3937_RS01850 at 411.594 kb on - strand, within DDA3937_RS01850 at 411.594 kb on - strand, within DDA3937_RS01850 at 411.594 kb on - strand, within DDA3937_RS01850 at 411.657 kb on + strand, within DDA3937_RS01850 at 411.658 kb on - strand, within DDA3937_RS01850 at 411.711 kb on + strand, within DDA3937_RS01850 at 411.788 kb on + strand, within DDA3937_RS01850 at 411.788 kb on + strand, within DDA3937_RS01850 at 411.788 kb on + strand, within DDA3937_RS01850 at 411.788 kb on + strand, within DDA3937_RS01850 at 411.789 kb on - strand, within DDA3937_RS01850 at 411.789 kb on - strand, within DDA3937_RS01850 at 411.789 kb on - strand, within DDA3937_RS01850 at 411.789 kb on - strand, within DDA3937_RS01850 at 411.789 kb on - strand, within DDA3937_RS01850 at 411.789 kb on - strand, within DDA3937_RS01850 at 411.789 kb on - strand, within DDA3937_RS01850 at 411.878 kb on + strand, within DDA3937_RS01850 at 411.878 kb on + strand, within DDA3937_RS01850 at 411.879 kb on - strand, within DDA3937_RS01850 at 411.879 kb on - strand, within DDA3937_RS01850 at 411.879 kb on - strand, within DDA3937_RS01850 at 412.035 kb on + strand, within DDA3937_RS01850 at 412.035 kb on + strand, within DDA3937_RS01850 at 412.035 kb on + strand, within DDA3937_RS01850 at 412.035 kb on + strand, within DDA3937_RS01850 at 412.035 kb on + strand, within DDA3937_RS01850 at 412.069 kb on + strand, within DDA3937_RS01850 at 412.305 kb on + strand at 412.336 kb on - strand at 412.336 kb on - strand at 412.367 kb on + strand at 412.367 kb on + strand at 412.378 kb on + strand at 412.459 kb on + strand at 412.460 kb on - strand at 412.579 kb on - strand at 412.679 kb on - strand, within DDA3937_RS01855 at 412.698 kb on + strand, within DDA3937_RS01855 at 413.072 kb on + strand, within DDA3937_RS01855 at 413.073 kb on - strand, within DDA3937_RS01855 at 413.257 kb on + strand, within DDA3937_RS01855 at 413.257 kb on + strand, within DDA3937_RS01855 at 413.258 kb on - strand, within DDA3937_RS01855 at 413.433 kb on + strand at 413.486 kb on + strand at 413.500 kb on + strand at 413.500 kb on + strand at 413.500 kb on + strand at 413.500 kb on + strand at 413.500 kb on + strand at 413.500 kb on + strand at 413.501 kb on - strand at 413.501 kb on - strand at 413.501 kb on - strand at 413.501 kb on - strand at 413.501 kb on - strand at 413.504 kb on + strand at 413.505 kb on - strand at 413.505 kb on - strand at 413.505 kb on - strand at 413.521 kb on + strand at 413.525 kb on + strand at 413.525 kb on + strand at 413.662 kb on + strand at 413.663 kb on - strand at 413.710 kb on + strand at 413.715 kb on - strand at 413.727 kb on + strand at 413.734 kb on + strand at 413.735 kb on - strand at 413.749 kb on - strand at 413.751 kb on + strand at 413.754 kb on - strand at 413.754 kb on - strand at 413.754 kb on - strand at 413.757 kb on - strand at 413.757 kb on - strand at 413.757 kb on - strand at 413.757 kb on - strand at 413.762 kb on + strand at 413.763 kb on - strand at 413.763 kb on - strand at 413.765 kb on + strand at 413.765 kb on + strand at 413.766 kb on - strand at 413.768 kb on - strand at 413.772 kb on - strand at 413.784 kb on + strand at 413.785 kb on - strand at 413.809 kb on + strand at 413.817 kb on - strand at 413.870 kb on + strand at 413.875 kb on + strand at 413.875 kb on + strand at 413.876 kb on - strand at 413.876 kb on - strand at 413.905 kb on - strand at 413.950 kb on + strand at 413.951 kb on - strand at 414.008 kb on - strand at 414.008 kb on - strand at 414.105 kb on - strand at 414.118 kb on + strand at 414.118 kb on + strand at 414.119 kb on - strand at 414.242 kb on + strand at 414.289 kb on + strand at 414.290 kb on - strand at 414.290 kb on - strand at 414.290 kb on - strand at 414.290 kb on - strand at 414.290 kb on - strand at 414.333 kb on + strand at 414.334 kb on - strand at 414.391 kb on + strand at 414.391 kb on + strand at 414.391 kb on + strand at 414.391 kb on + strand at 414.391 kb on + strand at 414.391 kb on + strand at 414.392 kb on - strand at 414.392 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 411,593 + DDA3937_RS01850 0.51 +1.1 411,593 + DDA3937_RS01850 0.51 -0.7 411,593 + DDA3937_RS01850 0.51 +0.4 411,594 - DDA3937_RS01850 0.51 +0.5 411,594 - DDA3937_RS01850 0.51 -0.4 411,594 - DDA3937_RS01850 0.51 +0.0 411,657 + DDA3937_RS01850 0.55 -1.9 411,658 - DDA3937_RS01850 0.55 -0.4 411,711 + DDA3937_RS01850 0.58 +0.6 411,788 + DDA3937_RS01850 0.63 -0.7 411,788 + DDA3937_RS01850 0.63 -1.4 411,788 + DDA3937_RS01850 0.63 -0.1 411,788 + DDA3937_RS01850 0.63 -0.6 411,789 - DDA3937_RS01850 0.63 +0.3 411,789 - DDA3937_RS01850 0.63 -0.1 411,789 - DDA3937_RS01850 0.63 -1.1 411,789 - DDA3937_RS01850 0.63 -0.4 411,789 - DDA3937_RS01850 0.63 -0.6 411,789 - DDA3937_RS01850 0.63 -0.3 411,789 - DDA3937_RS01850 0.63 +0.3 411,878 + DDA3937_RS01850 0.69 -0.6 411,878 + DDA3937_RS01850 0.69 -0.2 411,879 - DDA3937_RS01850 0.69 -0.4 411,879 - DDA3937_RS01850 0.69 -0.2 411,879 - DDA3937_RS01850 0.69 -0.4 412,035 + DDA3937_RS01850 0.78 -1.6 412,035 + DDA3937_RS01850 0.78 -1.6 412,035 + DDA3937_RS01850 0.78 +1.7 412,035 + DDA3937_RS01850 0.78 -0.6 412,035 + DDA3937_RS01850 0.78 -0.5 412,069 + DDA3937_RS01850 0.81 -1.8 412,305 + -1.4 412,336 - -1.0 412,336 - +0.9 412,367 + -1.0 412,367 + -0.6 412,378 + -1.4 412,459 + -0.3 412,460 - -0.5 412,579 - +0.7 412,679 - DDA3937_RS01855 0.11 -1.4 412,698 + DDA3937_RS01855 0.13 -1.1 413,072 + DDA3937_RS01855 0.54 -1.1 413,073 - DDA3937_RS01855 0.54 +0.2 413,257 + DDA3937_RS01855 0.74 -0.5 413,257 + DDA3937_RS01855 0.74 +0.4 413,258 - DDA3937_RS01855 0.74 +0.4 413,433 + +0.3 413,486 + +1.2 413,500 + +0.0 413,500 + +0.1 413,500 + -0.9 413,500 + -0.4 413,500 + -0.3 413,500 + -0.7 413,501 - -1.7 413,501 - -0.7 413,501 - -2.4 413,501 - +0.0 413,501 - +0.4 413,504 + -1.6 413,505 - -1.4 413,505 - -1.0 413,505 - +0.4 413,521 + +0.4 413,525 + +0.3 413,525 + +0.0 413,662 + +0.3 413,663 - +1.0 413,710 + +0.1 413,715 - -1.0 413,727 + -2.2 413,734 + -1.0 413,735 - -0.5 413,749 - -0.4 413,751 + +0.9 413,754 - -1.4 413,754 - -0.1 413,754 - -0.2 413,757 - +0.1 413,757 - -0.9 413,757 - -3.8 413,757 - +0.1 413,762 + +0.5 413,763 - -0.3 413,763 - -1.0 413,765 + +0.3 413,765 + +0.1 413,766 - -0.4 413,768 - +0.5 413,772 - -0.5 413,784 + -1.0 413,785 - -0.4 413,809 + +1.0 413,817 - -2.1 413,870 + -0.9 413,875 + +0.6 413,875 + +0.2 413,876 - -1.0 413,876 - +1.3 413,905 - +0.7 413,950 + -0.7 413,951 - +0.0 414,008 - +0.2 414,008 - -0.1 414,105 - -0.6 414,118 + -0.3 414,118 + -3.6 414,119 - -0.1 414,242 + -0.1 414,289 + -2.6 414,290 - -1.1 414,290 - +3.2 414,290 - -0.1 414,290 - -2.1 414,290 - +0.4 414,333 + -0.1 414,334 - -2.1 414,391 + -1.0 414,391 + +0.3 414,391 + +0.2 414,391 + -0.6 414,391 + -1.6 414,391 + +0.6 414,392 - -0.0 414,392 - +1.4
Or see this region's nucleotide sequence