Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00550 and DDA3937_RS00555 are separated by 400 nucleotides DDA3937_RS00555 and DDA3937_RS00560 are separated by 276 nucleotides
DDA3937_RS00550: DDA3937_RS00550 - endoglucanase, at 131,069 to 132,067
_RS00550
DDA3937_RS00555: DDA3937_RS00555 - dicarboxylate/amino acid:cation symporter, at 132,468 to 133,754
_RS00555
DDA3937_RS00560: DDA3937_RS00560 - insulinase family protein, at 134,031 to 135,494
_RS00560
Position (kb) 132
133
134 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 131.506 kb on + strand, within DDA3937_RS00550 at 131.506 kb on + strand, within DDA3937_RS00550 at 131.506 kb on + strand, within DDA3937_RS00550 at 131.507 kb on - strand, within DDA3937_RS00550 at 131.507 kb on - strand, within DDA3937_RS00550 at 131.507 kb on - strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand at 131.571 kb on - strand, within DDA3937_RS00550 at 131.571 kb on - strand, within DDA3937_RS00550 at 131.571 kb on - strand, within DDA3937_RS00550 at 131.571 kb on - strand, within DDA3937_RS00550 at 131.571 kb on - strand, within DDA3937_RS00550 at 131.571 kb on - strand, within DDA3937_RS00550 at 131.571 kb on - strand, within DDA3937_RS00550 at 131.571 kb on - strand, within DDA3937_RS00550 at 131.571 kb on - strand, within DDA3937_RS00550 at 131.571 kb on - strand, within DDA3937_RS00550 at 131.592 kb on - strand, within DDA3937_RS00550 at 131.807 kb on + strand, within DDA3937_RS00550 at 131.807 kb on + strand, within DDA3937_RS00550 at 131.807 kb on + strand, within DDA3937_RS00550 at 131.808 kb on - strand, within DDA3937_RS00550 at 131.813 kb on + strand, within DDA3937_RS00550 at 131.813 kb on + strand, within DDA3937_RS00550 at 131.819 kb on + strand, within DDA3937_RS00550 at 131.819 kb on + strand, within DDA3937_RS00550 at 131.819 kb on + strand, within DDA3937_RS00550 at 131.858 kb on + strand, within DDA3937_RS00550 at 131.858 kb on + strand, within DDA3937_RS00550 at 131.859 kb on - strand, within DDA3937_RS00550 at 131.866 kb on + strand, within DDA3937_RS00550 at 131.866 kb on + strand, within DDA3937_RS00550 at 131.867 kb on - strand, within DDA3937_RS00550 at 131.867 kb on - strand, within DDA3937_RS00550 at 131.867 kb on - strand, within DDA3937_RS00550 at 131.867 kb on - strand, within DDA3937_RS00550 at 131.870 kb on + strand, within DDA3937_RS00550 at 131.871 kb on - strand, within DDA3937_RS00550 at 131.914 kb on + strand, within DDA3937_RS00550 at 131.915 kb on - strand, within DDA3937_RS00550 at 131.915 kb on - strand, within DDA3937_RS00550 at 131.915 kb on - strand, within DDA3937_RS00550 at 131.927 kb on + strand, within DDA3937_RS00550 at 131.927 kb on + strand, within DDA3937_RS00550 at 131.928 kb on - strand, within DDA3937_RS00550 at 131.928 kb on - strand, within DDA3937_RS00550 at 131.928 kb on - strand, within DDA3937_RS00550 at 131.928 kb on - strand, within DDA3937_RS00550 at 131.932 kb on + strand, within DDA3937_RS00550 at 131.932 kb on + strand, within DDA3937_RS00550 at 131.932 kb on + strand, within DDA3937_RS00550 at 131.933 kb on - strand, within DDA3937_RS00550 at 132.017 kb on + strand at 132.017 kb on + strand at 132.018 kb on - strand at 132.020 kb on + strand at 132.061 kb on + strand at 132.066 kb on - strand at 132.071 kb on + strand at 132.072 kb on - strand at 132.072 kb on - strand at 132.072 kb on - strand at 132.072 kb on - strand at 132.082 kb on + strand at 132.083 kb on - strand at 132.125 kb on - strand at 132.170 kb on + strand at 132.284 kb on - strand at 132.354 kb on - strand at 132.354 kb on - strand at 132.359 kb on + strand at 132.361 kb on + strand at 132.361 kb on + strand at 132.368 kb on - strand at 132.379 kb on + strand at 132.468 kb on - strand at 132.518 kb on + strand at 132.598 kb on + strand, within DDA3937_RS00555 at 132.599 kb on - strand, within DDA3937_RS00555 at 132.632 kb on + strand, within DDA3937_RS00555 at 132.633 kb on - strand, within DDA3937_RS00555 at 132.665 kb on + strand, within DDA3937_RS00555 at 132.723 kb on - strand, within DDA3937_RS00555 at 132.723 kb on - strand, within DDA3937_RS00555 at 132.826 kb on - strand, within DDA3937_RS00555 at 132.826 kb on - strand, within DDA3937_RS00555 at 132.826 kb on - strand, within DDA3937_RS00555 at 132.884 kb on + strand, within DDA3937_RS00555 at 132.885 kb on - strand, within DDA3937_RS00555 at 133.098 kb on + strand, within DDA3937_RS00555 at 133.098 kb on + strand, within DDA3937_RS00555 at 133.098 kb on + strand, within DDA3937_RS00555 at 133.099 kb on - strand, within DDA3937_RS00555 at 133.099 kb on - strand, within DDA3937_RS00555 at 133.136 kb on + strand, within DDA3937_RS00555 at 133.146 kb on + strand, within DDA3937_RS00555 at 133.146 kb on + strand, within DDA3937_RS00555 at 133.147 kb on - strand, within DDA3937_RS00555 at 133.147 kb on - strand, within DDA3937_RS00555 at 133.147 kb on - strand at 133.147 kb on - strand, within DDA3937_RS00555 at 133.147 kb on - strand, within DDA3937_RS00555 at 133.147 kb on - strand, within DDA3937_RS00555 at 133.231 kb on - strand, within DDA3937_RS00555 at 133.231 kb on - strand, within DDA3937_RS00555 at 133.256 kb on - strand, within DDA3937_RS00555 at 133.292 kb on + strand, within DDA3937_RS00555 at 133.292 kb on + strand at 133.293 kb on - strand, within DDA3937_RS00555 at 133.322 kb on + strand, within DDA3937_RS00555 at 133.323 kb on - strand, within DDA3937_RS00555 at 133.389 kb on + strand, within DDA3937_RS00555 at 133.389 kb on + strand, within DDA3937_RS00555 at 133.550 kb on - strand, within DDA3937_RS00555 at 133.655 kb on - strand at 133.673 kb on + strand at 133.673 kb on + strand at 133.673 kb on + strand at 133.674 kb on - strand at 133.674 kb on - strand at 133.719 kb on - strand at 133.756 kb on - strand at 133.771 kb on - strand at 133.813 kb on + strand at 133.834 kb on + strand at 133.834 kb on + strand at 133.859 kb on + strand at 133.867 kb on - strand at 133.889 kb on - strand at 133.889 kb on - strand at 133.889 kb on - strand at 133.907 kb on + strand at 133.918 kb on + strand at 133.918 kb on + strand at 133.918 kb on + strand at 133.919 kb on - strand at 133.919 kb on - strand at 133.996 kb on + strand at 133.996 kb on + strand at 133.996 kb on + strand at 133.997 kb on - strand at 133.997 kb on - strand at 134.001 kb on + strand at 134.001 kb on + strand at 134.002 kb on - strand at 134.002 kb on - strand at 134.002 kb on - strand at 134.002 kb on - strand at 134.015 kb on + strand at 134.016 kb on - strand at 134.021 kb on - strand at 134.110 kb on + strand at 134.110 kb on + strand at 134.111 kb on - strand at 134.111 kb on - strand at 134.111 kb on - strand at 134.111 kb on - strand at 134.206 kb on + strand, within DDA3937_RS00560 at 134.207 kb on - strand, within DDA3937_RS00560 at 134.207 kb on - strand, within DDA3937_RS00560 at 134.207 kb on - strand at 134.219 kb on + strand, within DDA3937_RS00560 at 134.219 kb on + strand, within DDA3937_RS00560 at 134.219 kb on + strand, within DDA3937_RS00560 at 134.219 kb on + strand, within DDA3937_RS00560 at 134.220 kb on - strand, within DDA3937_RS00560 at 134.220 kb on - strand, within DDA3937_RS00560 at 134.220 kb on - strand, within DDA3937_RS00560 at 134.220 kb on - strand, within DDA3937_RS00560 at 134.220 kb on - strand, within DDA3937_RS00560 at 134.270 kb on + strand, within DDA3937_RS00560 at 134.271 kb on - strand, within DDA3937_RS00560 at 134.382 kb on + strand, within DDA3937_RS00560 at 134.382 kb on + strand, within DDA3937_RS00560 at 134.382 kb on + strand, within DDA3937_RS00560 at 134.383 kb on - strand, within DDA3937_RS00560 at 134.383 kb on - strand, within DDA3937_RS00560 at 134.383 kb on - strand, within DDA3937_RS00560 at 134.383 kb on - strand, within DDA3937_RS00560 at 134.383 kb on - strand, within DDA3937_RS00560 at 134.390 kb on + strand, within DDA3937_RS00560 at 134.391 kb on - strand, within DDA3937_RS00560 at 134.391 kb on - strand, within DDA3937_RS00560 at 134.397 kb on + strand, within DDA3937_RS00560 at 134.397 kb on + strand, within DDA3937_RS00560 at 134.397 kb on + strand, within DDA3937_RS00560 at 134.397 kb on + strand, within DDA3937_RS00560 at 134.417 kb on + strand, within DDA3937_RS00560 at 134.483 kb on + strand, within DDA3937_RS00560 at 134.483 kb on + strand, within DDA3937_RS00560 at 134.484 kb on - strand, within DDA3937_RS00560 at 134.599 kb on - strand, within DDA3937_RS00560 at 134.645 kb on - strand at 134.645 kb on - strand, within DDA3937_RS00560 at 134.652 kb on + strand, within DDA3937_RS00560 at 134.653 kb on - strand, within DDA3937_RS00560 at 134.655 kb on + strand, within DDA3937_RS00560 at 134.655 kb on + strand, within DDA3937_RS00560 at 134.655 kb on + strand, within DDA3937_RS00560 at 134.667 kb on + strand, within DDA3937_RS00560 at 134.691 kb on + strand, within DDA3937_RS00560 at 134.691 kb on + strand, within DDA3937_RS00560 at 134.691 kb on + strand, within DDA3937_RS00560 at 134.691 kb on + strand, within DDA3937_RS00560 at 134.691 kb on + strand, within DDA3937_RS00560 at 134.691 kb on + strand, within DDA3937_RS00560 at 134.691 kb on + strand, within DDA3937_RS00560 at 134.691 kb on + strand, within DDA3937_RS00560 at 134.692 kb on - strand, within DDA3937_RS00560 at 134.692 kb on - strand, within DDA3937_RS00560
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 131,506 + DDA3937_RS00550 0.44 +0.8 131,506 + DDA3937_RS00550 0.44 +0.8 131,506 + DDA3937_RS00550 0.44 -1.8 131,507 - DDA3937_RS00550 0.44 -0.6 131,507 - DDA3937_RS00550 0.44 -0.3 131,507 - DDA3937_RS00550 0.44 -0.6 131,570 + DDA3937_RS00550 0.50 -2.1 131,570 + DDA3937_RS00550 0.50 +0.3 131,570 + DDA3937_RS00550 0.50 -0.1 131,570 + DDA3937_RS00550 0.50 -1.3 131,570 + DDA3937_RS00550 0.50 -0.2 131,570 + DDA3937_RS00550 0.50 +0.2 131,570 + DDA3937_RS00550 0.50 -1.8 131,570 + DDA3937_RS00550 0.50 +0.5 131,570 + DDA3937_RS00550 0.50 -0.6 131,570 + DDA3937_RS00550 0.50 +0.2 131,570 + DDA3937_RS00550 0.50 -0.3 131,570 + -1.1 131,571 - DDA3937_RS00550 0.50 +0.3 131,571 - DDA3937_RS00550 0.50 -1.2 131,571 - DDA3937_RS00550 0.50 -0.9 131,571 - DDA3937_RS00550 0.50 +1.0 131,571 - DDA3937_RS00550 0.50 -0.4 131,571 - DDA3937_RS00550 0.50 +1.5 131,571 - DDA3937_RS00550 0.50 -0.5 131,571 - DDA3937_RS00550 0.50 -0.1 131,571 - DDA3937_RS00550 0.50 +0.4 131,571 - DDA3937_RS00550 0.50 -0.4 131,592 - DDA3937_RS00550 0.52 +0.6 131,807 + DDA3937_RS00550 0.74 -0.8 131,807 + DDA3937_RS00550 0.74 +0.4 131,807 + DDA3937_RS00550 0.74 -1.7 131,808 - DDA3937_RS00550 0.74 +0.7 131,813 + DDA3937_RS00550 0.74 -2.3 131,813 + DDA3937_RS00550 0.74 -0.3 131,819 + DDA3937_RS00550 0.75 -1.2 131,819 + DDA3937_RS00550 0.75 -0.7 131,819 + DDA3937_RS00550 0.75 -1.4 131,858 + DDA3937_RS00550 0.79 -0.9 131,858 + DDA3937_RS00550 0.79 -1.6 131,859 - DDA3937_RS00550 0.79 +0.5 131,866 + DDA3937_RS00550 0.80 -0.2 131,866 + DDA3937_RS00550 0.80 -0.4 131,867 - DDA3937_RS00550 0.80 +0.6 131,867 - DDA3937_RS00550 0.80 -0.9 131,867 - DDA3937_RS00550 0.80 +0.1 131,867 - DDA3937_RS00550 0.80 +0.5 131,870 + DDA3937_RS00550 0.80 +0.2 131,871 - DDA3937_RS00550 0.80 -1.5 131,914 + DDA3937_RS00550 0.85 -0.2 131,915 - DDA3937_RS00550 0.85 +1.4 131,915 - DDA3937_RS00550 0.85 -0.3 131,915 - DDA3937_RS00550 0.85 -1.8 131,927 + DDA3937_RS00550 0.86 -0.5 131,927 + DDA3937_RS00550 0.86 +0.1 131,928 - DDA3937_RS00550 0.86 +0.4 131,928 - DDA3937_RS00550 0.86 -0.9 131,928 - DDA3937_RS00550 0.86 -0.8 131,928 - DDA3937_RS00550 0.86 +1.1 131,932 + DDA3937_RS00550 0.86 -0.3 131,932 + DDA3937_RS00550 0.86 -0.1 131,932 + DDA3937_RS00550 0.86 -0.1 131,933 - DDA3937_RS00550 0.86 +0.3 132,017 + -0.7 132,017 + -0.8 132,018 - -1.9 132,020 + -0.3 132,061 + +0.4 132,066 - -0.5 132,071 + -0.3 132,072 - -0.5 132,072 - +0.0 132,072 - -1.3 132,072 - -0.2 132,082 + -2.2 132,083 - +0.6 132,125 - -0.7 132,170 + +0.5 132,284 - -0.3 132,354 - +1.4 132,354 - -0.7 132,359 + -0.1 132,361 + +8.1 132,361 + -1.6 132,368 - -0.8 132,379 + -0.1 132,468 - +0.8 132,518 + -0.6 132,598 + DDA3937_RS00555 0.10 -2.5 132,599 - DDA3937_RS00555 0.10 -1.8 132,632 + DDA3937_RS00555 0.13 -2.6 132,633 - DDA3937_RS00555 0.13 -0.2 132,665 + DDA3937_RS00555 0.15 +0.1 132,723 - DDA3937_RS00555 0.20 -0.2 132,723 - DDA3937_RS00555 0.20 -0.2 132,826 - DDA3937_RS00555 0.28 -0.4 132,826 - DDA3937_RS00555 0.28 +0.8 132,826 - DDA3937_RS00555 0.28 -1.3 132,884 + DDA3937_RS00555 0.32 +0.1 132,885 - DDA3937_RS00555 0.32 +0.1 133,098 + DDA3937_RS00555 0.49 -1.1 133,098 + DDA3937_RS00555 0.49 -1.0 133,098 + DDA3937_RS00555 0.49 -1.0 133,099 - DDA3937_RS00555 0.49 +0.1 133,099 - DDA3937_RS00555 0.49 +0.8 133,136 + DDA3937_RS00555 0.52 -2.6 133,146 + DDA3937_RS00555 0.53 +0.1 133,146 + DDA3937_RS00555 0.53 -1.2 133,147 - DDA3937_RS00555 0.53 -3.1 133,147 - DDA3937_RS00555 0.53 -1.1 133,147 - +1.5 133,147 - DDA3937_RS00555 0.53 -2.4 133,147 - DDA3937_RS00555 0.53 -0.8 133,147 - DDA3937_RS00555 0.53 -1.7 133,231 - DDA3937_RS00555 0.59 -1.4 133,231 - DDA3937_RS00555 0.59 -1.9 133,256 - DDA3937_RS00555 0.61 -2.0 133,292 + DDA3937_RS00555 0.64 -1.3 133,292 + -0.8 133,293 - DDA3937_RS00555 0.64 -0.6 133,322 + DDA3937_RS00555 0.66 -0.9 133,323 - DDA3937_RS00555 0.66 -0.2 133,389 + DDA3937_RS00555 0.72 -0.4 133,389 + DDA3937_RS00555 0.72 -1.1 133,550 - DDA3937_RS00555 0.84 -0.5 133,655 - -1.3 133,673 + -0.6 133,673 + -1.0 133,673 + -0.7 133,674 - -1.5 133,674 - +0.8 133,719 - -0.5 133,756 - +1.9 133,771 - +0.3 133,813 + +2.5 133,834 + -1.1 133,834 + -0.5 133,859 + -0.5 133,867 - -1.7 133,889 - -2.7 133,889 - -1.3 133,889 - +0.5 133,907 + +2.9 133,918 + -1.2 133,918 + +0.8 133,918 + -0.8 133,919 - -1.7 133,919 - -1.1 133,996 + -0.5 133,996 + +0.8 133,996 + +0.5 133,997 - +0.1 133,997 - -1.4 134,001 + -0.7 134,001 + +0.3 134,002 - -1.3 134,002 - -0.9 134,002 - -1.2 134,002 - -3.0 134,015 + -0.5 134,016 - -0.5 134,021 - -1.4 134,110 + -1.3 134,110 + -1.5 134,111 - -1.3 134,111 - -1.2 134,111 - -0.3 134,111 - -1.2 134,206 + DDA3937_RS00560 0.12 -2.2 134,207 - DDA3937_RS00560 0.12 -2.2 134,207 - DDA3937_RS00560 0.12 -0.8 134,207 - +0.5 134,219 + DDA3937_RS00560 0.13 +0.5 134,219 + DDA3937_RS00560 0.13 -1.4 134,219 + DDA3937_RS00560 0.13 +0.1 134,219 + DDA3937_RS00560 0.13 -1.9 134,220 - DDA3937_RS00560 0.13 -1.0 134,220 - DDA3937_RS00560 0.13 +0.6 134,220 - DDA3937_RS00560 0.13 -0.8 134,220 - DDA3937_RS00560 0.13 -0.8 134,220 - DDA3937_RS00560 0.13 -0.1 134,270 + DDA3937_RS00560 0.16 -2.2 134,271 - DDA3937_RS00560 0.16 -0.5 134,382 + DDA3937_RS00560 0.24 +0.2 134,382 + DDA3937_RS00560 0.24 -0.8 134,382 + DDA3937_RS00560 0.24 -0.7 134,383 - DDA3937_RS00560 0.24 -0.9 134,383 - DDA3937_RS00560 0.24 -2.7 134,383 - DDA3937_RS00560 0.24 -1.2 134,383 - DDA3937_RS00560 0.24 -0.1 134,383 - DDA3937_RS00560 0.24 -1.3 134,390 + DDA3937_RS00560 0.25 -1.0 134,391 - DDA3937_RS00560 0.25 +1.0 134,391 - DDA3937_RS00560 0.25 -0.6 134,397 + DDA3937_RS00560 0.25 -1.1 134,397 + DDA3937_RS00560 0.25 -0.8 134,397 + DDA3937_RS00560 0.25 -2.2 134,397 + DDA3937_RS00560 0.25 -3.3 134,417 + DDA3937_RS00560 0.26 -0.5 134,483 + DDA3937_RS00560 0.31 -1.2 134,483 + DDA3937_RS00560 0.31 -1.8 134,484 - DDA3937_RS00560 0.31 -1.4 134,599 - DDA3937_RS00560 0.39 -2.3 134,645 - -0.1 134,645 - DDA3937_RS00560 0.42 -0.5 134,652 + DDA3937_RS00560 0.42 -1.9 134,653 - DDA3937_RS00560 0.42 -0.9 134,655 + DDA3937_RS00560 0.43 -2.2 134,655 + DDA3937_RS00560 0.43 -3.1 134,655 + DDA3937_RS00560 0.43 -1.3 134,667 + DDA3937_RS00560 0.43 -0.9 134,691 + DDA3937_RS00560 0.45 -1.4 134,691 + DDA3937_RS00560 0.45 +0.4 134,691 + DDA3937_RS00560 0.45 +0.2 134,691 + DDA3937_RS00560 0.45 -0.5 134,691 + DDA3937_RS00560 0.45 -1.3 134,691 + DDA3937_RS00560 0.45 -1.8 134,691 + DDA3937_RS00560 0.45 -1.1 134,691 + DDA3937_RS00560 0.45 +0.9 134,692 - DDA3937_RS00560 0.45 -0.2 134,692 - DDA3937_RS00560 0.45 -0.5
Or see this region's nucleotide sequence