Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00215 and DDA3937_RS00220 are separated by 4 nucleotides DDA3937_RS00220 and DDA3937_RS00225 are separated by 265 nucleotides DDA3937_RS00225 and DDA3937_RS00230 are separated by 42 nucleotides
DDA3937_RS00215: DDA3937_RS00215 - SDR family oxidoreductase, at 51,748 to 52,542
_RS00215
DDA3937_RS00220: DDA3937_RS00220 - long-chain-fatty-acid--CoA ligase, at 52,547 to 53,185
_RS00220
DDA3937_RS00225: DDA3937_RS00225 - MFS transporter, at 53,451 to 54,629
_RS00225
DDA3937_RS00230: DDA3937_RS00230 - LysR family transcriptional regulator, at 54,672 to 55,562
_RS00230
Position (kb) 53
54
55 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 52.521 kb on + strand at 52.521 kb on + strand at 52.521 kb on + strand at 52.548 kb on + strand at 52.549 kb on - strand at 52.581 kb on + strand at 52.581 kb on + strand at 52.582 kb on - strand at 52.590 kb on + strand at 52.612 kb on + strand, within DDA3937_RS00220 at 52.612 kb on + strand, within DDA3937_RS00220 at 52.613 kb on - strand, within DDA3937_RS00220 at 52.733 kb on + strand, within DDA3937_RS00220 at 52.733 kb on + strand, within DDA3937_RS00220 at 52.733 kb on + strand, within DDA3937_RS00220 at 52.733 kb on + strand, within DDA3937_RS00220 at 52.747 kb on + strand, within DDA3937_RS00220 at 52.747 kb on + strand, within DDA3937_RS00220 at 52.748 kb on - strand, within DDA3937_RS00220 at 52.748 kb on - strand, within DDA3937_RS00220 at 52.772 kb on - strand, within DDA3937_RS00220 at 52.782 kb on - strand at 52.782 kb on - strand, within DDA3937_RS00220 at 52.787 kb on + strand, within DDA3937_RS00220 at 52.787 kb on + strand, within DDA3937_RS00220 at 52.787 kb on + strand, within DDA3937_RS00220 at 52.833 kb on + strand, within DDA3937_RS00220 at 52.833 kb on + strand, within DDA3937_RS00220 at 52.833 kb on + strand, within DDA3937_RS00220 at 52.833 kb on + strand, within DDA3937_RS00220 at 52.834 kb on - strand, within DDA3937_RS00220 at 52.834 kb on - strand, within DDA3937_RS00220 at 52.834 kb on - strand, within DDA3937_RS00220 at 52.944 kb on + strand, within DDA3937_RS00220 at 52.944 kb on + strand, within DDA3937_RS00220 at 52.945 kb on - strand, within DDA3937_RS00220 at 52.954 kb on + strand, within DDA3937_RS00220 at 52.954 kb on + strand, within DDA3937_RS00220 at 52.955 kb on - strand, within DDA3937_RS00220 at 52.959 kb on + strand, within DDA3937_RS00220 at 52.959 kb on + strand, within DDA3937_RS00220 at 52.960 kb on - strand, within DDA3937_RS00220 at 52.960 kb on - strand, within DDA3937_RS00220 at 52.960 kb on - strand, within DDA3937_RS00220 at 52.960 kb on - strand, within DDA3937_RS00220 at 52.960 kb on - strand, within DDA3937_RS00220 at 52.960 kb on - strand, within DDA3937_RS00220 at 53.035 kb on + strand, within DDA3937_RS00220 at 53.035 kb on + strand, within DDA3937_RS00220 at 53.035 kb on + strand, within DDA3937_RS00220 at 53.037 kb on + strand, within DDA3937_RS00220 at 53.037 kb on + strand, within DDA3937_RS00220 at 53.037 kb on + strand, within DDA3937_RS00220 at 53.038 kb on - strand, within DDA3937_RS00220 at 53.038 kb on - strand, within DDA3937_RS00220 at 53.053 kb on - strand, within DDA3937_RS00220 at 53.076 kb on + strand, within DDA3937_RS00220 at 53.076 kb on + strand, within DDA3937_RS00220 at 53.076 kb on + strand, within DDA3937_RS00220 at 53.076 kb on + strand, within DDA3937_RS00220 at 53.076 kb on + strand, within DDA3937_RS00220 at 53.076 kb on + strand, within DDA3937_RS00220 at 53.076 kb on + strand, within DDA3937_RS00220 at 53.076 kb on + strand, within DDA3937_RS00220 at 53.076 kb on + strand, within DDA3937_RS00220 at 53.076 kb on + strand, within DDA3937_RS00220 at 53.076 kb on + strand, within DDA3937_RS00220 at 53.076 kb on + strand, within DDA3937_RS00220 at 53.076 kb on + strand, within DDA3937_RS00220 at 53.077 kb on - strand, within DDA3937_RS00220 at 53.077 kb on - strand, within DDA3937_RS00220 at 53.077 kb on - strand, within DDA3937_RS00220 at 53.077 kb on - strand, within DDA3937_RS00220 at 53.077 kb on - strand, within DDA3937_RS00220 at 53.077 kb on - strand, within DDA3937_RS00220 at 53.077 kb on - strand, within DDA3937_RS00220 at 53.077 kb on - strand, within DDA3937_RS00220 at 53.077 kb on - strand, within DDA3937_RS00220 at 53.077 kb on - strand, within DDA3937_RS00220 at 53.156 kb on - strand at 53.156 kb on - strand at 53.190 kb on + strand at 53.190 kb on + strand at 53.190 kb on + strand at 53.191 kb on - strand at 53.191 kb on - strand at 53.191 kb on - strand at 53.261 kb on + strand at 53.262 kb on - strand at 53.272 kb on + strand at 53.272 kb on + strand at 53.272 kb on + strand at 53.273 kb on - strand at 53.273 kb on - strand at 53.294 kb on + strand at 53.294 kb on + strand at 53.294 kb on + strand at 53.328 kb on + strand at 53.328 kb on + strand at 53.329 kb on - strand at 53.345 kb on - strand at 53.345 kb on - strand at 53.354 kb on - strand at 53.354 kb on - strand at 53.366 kb on + strand at 53.366 kb on + strand at 53.366 kb on + strand at 53.366 kb on + strand at 53.367 kb on - strand at 53.367 kb on - strand at 53.408 kb on - strand at 53.409 kb on + strand at 53.409 kb on + strand at 53.409 kb on + strand at 53.410 kb on - strand at 53.410 kb on - strand at 53.410 kb on - strand at 53.410 kb on - strand at 53.410 kb on - strand at 53.410 kb on - strand at 53.412 kb on + strand at 53.412 kb on + strand at 53.412 kb on + strand at 53.412 kb on + strand at 53.412 kb on + strand at 53.412 kb on + strand at 53.412 kb on + strand at 53.412 kb on + strand at 53.412 kb on + strand at 53.412 kb on + strand at 53.413 kb on - strand at 53.413 kb on - strand at 53.413 kb on - strand at 53.413 kb on - strand at 53.413 kb on - strand at 53.424 kb on + strand at 53.424 kb on + strand at 53.424 kb on + strand at 53.425 kb on - strand at 53.425 kb on - strand at 53.532 kb on + strand at 53.533 kb on - strand at 53.623 kb on + strand, within DDA3937_RS00225 at 53.623 kb on + strand, within DDA3937_RS00225 at 53.623 kb on + strand, within DDA3937_RS00225 at 53.624 kb on - strand, within DDA3937_RS00225 at 53.730 kb on + strand, within DDA3937_RS00225 at 53.730 kb on + strand, within DDA3937_RS00225 at 53.731 kb on - strand, within DDA3937_RS00225 at 53.731 kb on - strand, within DDA3937_RS00225 at 53.865 kb on + strand, within DDA3937_RS00225 at 53.865 kb on + strand, within DDA3937_RS00225 at 53.865 kb on + strand, within DDA3937_RS00225 at 53.865 kb on + strand, within DDA3937_RS00225 at 53.865 kb on + strand at 53.866 kb on - strand, within DDA3937_RS00225 at 53.866 kb on - strand, within DDA3937_RS00225 at 53.866 kb on - strand, within DDA3937_RS00225 at 53.866 kb on - strand, within DDA3937_RS00225 at 53.866 kb on - strand, within DDA3937_RS00225 at 53.866 kb on - strand, within DDA3937_RS00225 at 53.866 kb on - strand, within DDA3937_RS00225 at 53.971 kb on + strand, within DDA3937_RS00225 at 53.971 kb on + strand, within DDA3937_RS00225 at 53.971 kb on + strand, within DDA3937_RS00225 at 54.035 kb on + strand, within DDA3937_RS00225 at 54.035 kb on + strand, within DDA3937_RS00225 at 54.036 kb on - strand, within DDA3937_RS00225 at 54.036 kb on - strand, within DDA3937_RS00225 at 54.036 kb on - strand, within DDA3937_RS00225 at 54.036 kb on - strand, within DDA3937_RS00225 at 54.133 kb on - strand, within DDA3937_RS00225 at 54.312 kb on + strand, within DDA3937_RS00225 at 54.368 kb on + strand, within DDA3937_RS00225 at 54.368 kb on + strand, within DDA3937_RS00225 at 54.369 kb on - strand, within DDA3937_RS00225 at 54.372 kb on + strand, within DDA3937_RS00225 at 54.372 kb on + strand, within DDA3937_RS00225 at 54.372 kb on + strand, within DDA3937_RS00225 at 54.372 kb on + strand, within DDA3937_RS00225 at 54.372 kb on + strand, within DDA3937_RS00225 at 54.373 kb on - strand, within DDA3937_RS00225 at 54.373 kb on - strand, within DDA3937_RS00225 at 54.373 kb on - strand, within DDA3937_RS00225 at 54.373 kb on - strand, within DDA3937_RS00225 at 54.452 kb on - strand, within DDA3937_RS00225 at 54.452 kb on - strand, within DDA3937_RS00225 at 54.702 kb on - strand at 54.712 kb on - strand at 55.013 kb on + strand, within DDA3937_RS00230 at 55.013 kb on + strand, within DDA3937_RS00230 at 55.013 kb on + strand, within DDA3937_RS00230 at 55.013 kb on + strand, within DDA3937_RS00230 at 55.013 kb on + strand, within DDA3937_RS00230 at 55.013 kb on + strand, within DDA3937_RS00230 at 55.014 kb on - strand, within DDA3937_RS00230 at 55.014 kb on - strand, within DDA3937_RS00230 at 55.014 kb on - strand, within DDA3937_RS00230 at 55.183 kb on - strand, within DDA3937_RS00230 at 55.183 kb on - strand, within DDA3937_RS00230 at 55.183 kb on - strand, within DDA3937_RS00230 at 55.245 kb on + strand, within DDA3937_RS00230 at 55.245 kb on + strand, within DDA3937_RS00230 at 55.246 kb on - strand, within DDA3937_RS00230 at 55.328 kb on + strand, within DDA3937_RS00230 at 55.499 kb on - strand at 55.595 kb on + strand at 55.595 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 52,521 + -0.4 52,521 + -0.5 52,521 + -2.5 52,548 + +0.2 52,549 - -0.3 52,581 + +0.5 52,581 + -0.4 52,582 - -1.1 52,590 + -0.6 52,612 + DDA3937_RS00220 0.10 -1.6 52,612 + DDA3937_RS00220 0.10 -0.3 52,613 - DDA3937_RS00220 0.10 -0.5 52,733 + DDA3937_RS00220 0.29 -0.9 52,733 + DDA3937_RS00220 0.29 +0.8 52,733 + DDA3937_RS00220 0.29 -0.8 52,733 + DDA3937_RS00220 0.29 +0.8 52,747 + DDA3937_RS00220 0.31 -0.4 52,747 + DDA3937_RS00220 0.31 +2.1 52,748 - DDA3937_RS00220 0.31 -0.5 52,748 - DDA3937_RS00220 0.31 -1.3 52,772 - DDA3937_RS00220 0.35 -0.7 52,782 - -0.1 52,782 - DDA3937_RS00220 0.37 +0.3 52,787 + DDA3937_RS00220 0.38 +1.2 52,787 + DDA3937_RS00220 0.38 -0.8 52,787 + DDA3937_RS00220 0.38 +0.3 52,833 + DDA3937_RS00220 0.45 +1.6 52,833 + DDA3937_RS00220 0.45 -1.5 52,833 + DDA3937_RS00220 0.45 +0.7 52,833 + DDA3937_RS00220 0.45 -0.8 52,834 - DDA3937_RS00220 0.45 +1.1 52,834 - DDA3937_RS00220 0.45 -1.6 52,834 - DDA3937_RS00220 0.45 +0.4 52,944 + DDA3937_RS00220 0.62 +0.1 52,944 + DDA3937_RS00220 0.62 -0.8 52,945 - DDA3937_RS00220 0.62 -0.1 52,954 + DDA3937_RS00220 0.64 -0.2 52,954 + DDA3937_RS00220 0.64 +1.5 52,955 - DDA3937_RS00220 0.64 -1.5 52,959 + DDA3937_RS00220 0.64 -0.5 52,959 + DDA3937_RS00220 0.64 -1.9 52,960 - DDA3937_RS00220 0.65 -1.1 52,960 - DDA3937_RS00220 0.65 +0.5 52,960 - DDA3937_RS00220 0.65 +0.7 52,960 - DDA3937_RS00220 0.65 +3.9 52,960 - DDA3937_RS00220 0.65 +4.8 52,960 - DDA3937_RS00220 0.65 -2.2 53,035 + DDA3937_RS00220 0.76 -0.3 53,035 + DDA3937_RS00220 0.76 -0.2 53,035 + DDA3937_RS00220 0.76 +0.2 53,037 + DDA3937_RS00220 0.77 -0.4 53,037 + DDA3937_RS00220 0.77 +0.2 53,037 + DDA3937_RS00220 0.77 +0.7 53,038 - DDA3937_RS00220 0.77 +1.5 53,038 - DDA3937_RS00220 0.77 -0.1 53,053 - DDA3937_RS00220 0.79 +1.3 53,076 + DDA3937_RS00220 0.83 +1.4 53,076 + DDA3937_RS00220 0.83 +0.2 53,076 + DDA3937_RS00220 0.83 -0.7 53,076 + DDA3937_RS00220 0.83 -1.9 53,076 + DDA3937_RS00220 0.83 -0.3 53,076 + DDA3937_RS00220 0.83 -0.9 53,076 + DDA3937_RS00220 0.83 -0.8 53,076 + DDA3937_RS00220 0.83 -0.1 53,076 + DDA3937_RS00220 0.83 -1.4 53,076 + DDA3937_RS00220 0.83 -0.5 53,076 + DDA3937_RS00220 0.83 -0.8 53,076 + DDA3937_RS00220 0.83 -0.5 53,076 + DDA3937_RS00220 0.83 -0.8 53,077 - DDA3937_RS00220 0.83 -0.8 53,077 - DDA3937_RS00220 0.83 -0.2 53,077 - DDA3937_RS00220 0.83 -0.9 53,077 - DDA3937_RS00220 0.83 +0.1 53,077 - DDA3937_RS00220 0.83 -0.9 53,077 - DDA3937_RS00220 0.83 -0.2 53,077 - DDA3937_RS00220 0.83 +0.5 53,077 - DDA3937_RS00220 0.83 +2.1 53,077 - DDA3937_RS00220 0.83 -1.4 53,077 - DDA3937_RS00220 0.83 -2.4 53,156 - -0.3 53,156 - -0.2 53,190 + -1.9 53,190 + -0.3 53,190 + -1.6 53,191 - -1.0 53,191 - -0.3 53,191 - +0.2 53,261 + +1.1 53,262 - -0.6 53,272 + -0.1 53,272 + -0.5 53,272 + +1.0 53,273 - -0.5 53,273 - +1.0 53,294 + -1.1 53,294 + -0.1 53,294 + +1.1 53,328 + -1.1 53,328 + -1.7 53,329 - -0.7 53,345 - +1.5 53,345 - -3.0 53,354 - -0.5 53,354 - +0.3 53,366 + +0.4 53,366 + +0.5 53,366 + +0.3 53,366 + +1.8 53,367 - -2.4 53,367 - +1.5 53,408 - -1.8 53,409 + -0.7 53,409 + -0.8 53,409 + -1.2 53,410 - +4.2 53,410 - -0.1 53,410 - -1.7 53,410 - -0.8 53,410 - -2.8 53,410 - -1.5 53,412 + -0.3 53,412 + +1.6 53,412 + +0.0 53,412 + -1.1 53,412 + -1.2 53,412 + -2.2 53,412 + -1.8 53,412 + +0.8 53,412 + +0.5 53,412 + +0.1 53,413 - +0.3 53,413 - -0.5 53,413 - -0.1 53,413 - -1.9 53,413 - -1.1 53,424 + -1.3 53,424 + -0.3 53,424 + -0.3 53,425 - -1.8 53,425 - -1.7 53,532 + -0.4 53,533 - -1.1 53,623 + DDA3937_RS00225 0.15 -0.8 53,623 + DDA3937_RS00225 0.15 -0.0 53,623 + DDA3937_RS00225 0.15 -0.4 53,624 - DDA3937_RS00225 0.15 -2.6 53,730 + DDA3937_RS00225 0.24 +0.4 53,730 + DDA3937_RS00225 0.24 -0.7 53,731 - DDA3937_RS00225 0.24 -0.6 53,731 - DDA3937_RS00225 0.24 -0.2 53,865 + DDA3937_RS00225 0.35 -0.4 53,865 + DDA3937_RS00225 0.35 -0.2 53,865 + DDA3937_RS00225 0.35 -0.4 53,865 + DDA3937_RS00225 0.35 -1.4 53,865 + +1.2 53,866 - DDA3937_RS00225 0.35 -1.1 53,866 - DDA3937_RS00225 0.35 -0.1 53,866 - DDA3937_RS00225 0.35 -0.6 53,866 - DDA3937_RS00225 0.35 -2.1 53,866 - DDA3937_RS00225 0.35 -0.2 53,866 - DDA3937_RS00225 0.35 -1.8 53,866 - DDA3937_RS00225 0.35 -0.7 53,971 + DDA3937_RS00225 0.44 +0.1 53,971 + DDA3937_RS00225 0.44 -0.4 53,971 + DDA3937_RS00225 0.44 -1.1 54,035 + DDA3937_RS00225 0.50 -0.4 54,035 + DDA3937_RS00225 0.50 +0.2 54,036 - DDA3937_RS00225 0.50 +1.4 54,036 - DDA3937_RS00225 0.50 -0.5 54,036 - DDA3937_RS00225 0.50 +0.6 54,036 - DDA3937_RS00225 0.50 -0.8 54,133 - DDA3937_RS00225 0.58 -0.6 54,312 + DDA3937_RS00225 0.73 -1.4 54,368 + DDA3937_RS00225 0.78 -0.5 54,368 + DDA3937_RS00225 0.78 -0.3 54,369 - DDA3937_RS00225 0.78 -0.9 54,372 + DDA3937_RS00225 0.78 +0.5 54,372 + DDA3937_RS00225 0.78 -0.9 54,372 + DDA3937_RS00225 0.78 -1.8 54,372 + DDA3937_RS00225 0.78 -1.7 54,372 + DDA3937_RS00225 0.78 -1.4 54,373 - DDA3937_RS00225 0.78 -0.3 54,373 - DDA3937_RS00225 0.78 +0.2 54,373 - DDA3937_RS00225 0.78 +0.6 54,373 - DDA3937_RS00225 0.78 -0.7 54,452 - DDA3937_RS00225 0.85 -1.4 54,452 - DDA3937_RS00225 0.85 -1.1 54,702 - +0.9 54,712 - -0.7 55,013 + DDA3937_RS00230 0.38 +1.0 55,013 + DDA3937_RS00230 0.38 +0.3 55,013 + DDA3937_RS00230 0.38 -1.7 55,013 + DDA3937_RS00230 0.38 -0.1 55,013 + DDA3937_RS00230 0.38 -1.5 55,013 + DDA3937_RS00230 0.38 -1.0 55,014 - DDA3937_RS00230 0.38 +0.8 55,014 - DDA3937_RS00230 0.38 -0.2 55,014 - DDA3937_RS00230 0.38 -2.1 55,183 - DDA3937_RS00230 0.57 -1.1 55,183 - DDA3937_RS00230 0.57 -0.0 55,183 - DDA3937_RS00230 0.57 -0.1 55,245 + DDA3937_RS00230 0.64 +0.5 55,245 + DDA3937_RS00230 0.64 +0.5 55,246 - DDA3937_RS00230 0.64 +1.9 55,328 + DDA3937_RS00230 0.74 -0.0 55,499 - -0.9 55,595 + -0.1 55,595 + -1.1
Or see this region's nucleotide sequence