Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21515

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,900,060	+		DDA3937_RS21510	0.19	+0.1
4,900,060	+		DDA3937_RS21510	0.19	-0.7
4,900,061	-		DDA3937_RS21510	0.19	-1.4
4,900,063	+		DDA3937_RS21510	0.20	+1.5
4,900,074	+				+0.6
4,900,074	+		DDA3937_RS21510	0.21	-2.4
4,900,074	+		DDA3937_RS21510	0.21	+0.2
4,900,074	+		DDA3937_RS21510	0.21	-1.0
4,900,074	+		DDA3937_RS21510	0.21	-0.7
4,900,075	-		DDA3937_RS21510	0.21	-1.9
4,900,078	+		DDA3937_RS21510	0.21	-1.3
4,900,078	+		DDA3937_RS21510	0.21	-0.4
4,900,078	+		DDA3937_RS21510	0.21	-0.7
4,900,078	+		DDA3937_RS21510	0.21	+0.3
4,900,078	+		DDA3937_RS21510	0.21	-2.4
4,900,078	+		DDA3937_RS21510	0.21	+0.3
4,900,079	-				+2.6
4,900,079	-		DDA3937_RS21510	0.21	-2.0
4,900,079	-		DDA3937_RS21510	0.21	-1.9
4,900,079	-		DDA3937_RS21510	0.21	-1.2
4,900,159	+		DDA3937_RS21510	0.30	-0.4
4,900,160	-		DDA3937_RS21510	0.30	-1.9
4,900,201	-		DDA3937_RS21510	0.34	-0.1
4,900,201	-		DDA3937_RS21510	0.34	-1.0
4,900,201	-		DDA3937_RS21510	0.34	-0.7
4,900,311	-		DDA3937_RS21510	0.46	-2.0
4,900,312	+		DDA3937_RS21510	0.46	-0.1
4,900,312	+		DDA3937_RS21510	0.46	-0.5
4,900,323	-		DDA3937_RS21510	0.47	+0.3
4,900,508	+		DDA3937_RS21510	0.66	-0.2
4,900,508	+		DDA3937_RS21510	0.66	-1.2
4,900,508	+		DDA3937_RS21510	0.66	+0.1
4,900,509	-		DDA3937_RS21510	0.67	+0.0
4,900,510	+		DDA3937_RS21510	0.67	-2.8
4,900,510	+		DDA3937_RS21510	0.67	-1.4
4,900,510	+		DDA3937_RS21510	0.67	-1.1
4,900,511	-		DDA3937_RS21510	0.67	+0.4
4,900,511	-		DDA3937_RS21510	0.67	-0.2
4,900,512	+		DDA3937_RS21510	0.67	-0.7
4,900,512	+		DDA3937_RS21510	0.67	+0.7
4,900,512	+		DDA3937_RS21510	0.67	+0.2
4,900,541	+		DDA3937_RS21510	0.70	+0.1
4,900,541	+		DDA3937_RS21510	0.70	+0.6
4,900,541	+		DDA3937_RS21510	0.70	-2.1
4,900,541	+		DDA3937_RS21510	0.70	+0.9
4,900,541	+		DDA3937_RS21510	0.70	-0.9
4,900,541	+		DDA3937_RS21510	0.70	+0.0
4,900,541	+		DDA3937_RS21510	0.70	-1.1
4,900,541	+		DDA3937_RS21510	0.70	+0.1
4,900,541	+		DDA3937_RS21510	0.70	-0.4
4,900,542	-		DDA3937_RS21510	0.70	-1.0
4,900,542	-		DDA3937_RS21510	0.70	-1.0
4,900,543	+		DDA3937_RS21510	0.70	+0.2
4,900,543	+		DDA3937_RS21510	0.70	-0.7
4,900,543	+		DDA3937_RS21510	0.70	-0.7
4,900,543	+		DDA3937_RS21510	0.70	-1.6
4,900,543	+		DDA3937_RS21510	0.70	+0.7
4,900,625	+		DDA3937_RS21510	0.79	+0.7
4,900,675	+		DDA3937_RS21510	0.84	-0.5
4,900,676	-		DDA3937_RS21510	0.84	+0.4
4,900,678	+		DDA3937_RS21510	0.84	+0.7
4,900,687	+		DDA3937_RS21510	0.85	-2.0
4,900,728	+				-1.0
4,900,728	+		DDA3937_RS21510	0.90	+1.8
4,900,763	+				-0.3
4,900,776	-				-0.7
4,900,782	-				-1.0
4,900,782	-				+0.0
4,900,789	+				-0.6
4,900,789	+				-0.3
4,900,789	+				-1.2
4,900,790	-				+0.0
4,900,790	-				+1.5
4,900,793	+				-0.1
4,900,876	-				-0.8
4,900,881	-				-0.9
4,900,894	+				-0.2
4,900,923	-				+0.0
4,900,926	+				-2.7
4,900,927	-				-1.6
4,900,927	-				+0.1
4,900,929	-				-2.9
4,900,979	+				-1.9
4,901,040	-		DDA3937_RS21515	0.12	-0.5
4,901,142	-		DDA3937_RS21515	0.20	+0.6
4,901,172	+		DDA3937_RS21515	0.23	-2.4
4,901,219	+		DDA3937_RS21515	0.27	-0.9
4,901,282	+		DDA3937_RS21515	0.32	-0.7
4,901,283	-		DDA3937_RS21515	0.32	+1.0
4,901,283	-		DDA3937_RS21515	0.32	+1.6
4,901,283	-		DDA3937_RS21515	0.32	-0.5
4,901,384	+		DDA3937_RS21515	0.41	+0.1
4,901,384	+		DDA3937_RS21515	0.41	-1.1
4,901,387	-		DDA3937_RS21515	0.41	-1.1
4,901,437	-		DDA3937_RS21515	0.46	+1.6
4,901,527	+		DDA3937_RS21515	0.53	-1.6
4,901,528	-		DDA3937_RS21515	0.53	-1.3
4,901,612	+		DDA3937_RS21515	0.61	-1.7
4,901,648	+		DDA3937_RS21515	0.64	-1.7
4,901,652	-		DDA3937_RS21515	0.64	-1.1
4,901,852	+		DDA3937_RS21515	0.81	-0.4
4,901,901	-		DDA3937_RS21515	0.85	-0.4
4,901,922	-		DDA3937_RS21515	0.87	-0.7
4,901,928	+		DDA3937_RS21515	0.88	-1.3
4,901,928	+		DDA3937_RS21515	0.88	-1.9
4,901,962	-				+0.4
4,901,990	-				-1.3
4,901,990	-				+1.0
4,901,992	+				+1.4
4,901,998	+				-2.0
4,901,999	-				+2.9
4,902,071	+				+0.4
4,902,074	+				+0.4
4,902,078	-				-1.8
4,902,100	+				-1.0
4,902,100	+				-1.8
4,902,101	-				-0.7
4,902,101	-				+0.5
4,902,101	-				+1.4
4,902,177	+				-0.4
4,902,177	+				-0.1
4,902,177	+				-0.4
4,902,177	+				+1.3
4,902,177	+				-0.1
4,902,177	+				-2.2
4,902,178	-				-0.0
4,902,178	-				-0.1
4,902,178	-				-1.0
4,902,178	-				-2.3
4,902,179	+				-0.4
4,902,179	+				+2.0
4,902,179	+				+0.7
4,902,180	-				+1.6
4,902,180	-				-2.3
4,902,180	-				-1.9
4,902,180	-				+1.6
4,902,180	-				+0.7
4,902,180	-				+2.5
4,902,180	-				+0.8
4,902,190	+				-2.6
4,902,190	+				-0.7
4,902,191	-				-0.3
4,902,255	+		DDA3937_RS21520	0.15	-4.2
4,902,312	-		DDA3937_RS21520	0.20	-1.4
4,902,312	-		DDA3937_RS21520	0.20	+0.1
4,902,340	-		DDA3937_RS21520	0.22	-0.5
4,902,378	+		DDA3937_RS21520	0.25	-0.3
4,902,379	-		DDA3937_RS21520	0.25	+0.1
4,902,401	+		DDA3937_RS21520	0.27	-0.3
4,902,401	+		DDA3937_RS21520	0.27	-0.6
4,902,402	-		DDA3937_RS21520	0.27	-1.0
4,902,476	+		DDA3937_RS21520	0.33	-0.9
4,902,482	+		DDA3937_RS21520	0.34	-0.9
4,902,513	+		DDA3937_RS21520	0.36	+0.4
4,902,514	-		DDA3937_RS21520	0.36	-1.0
4,902,525	+		DDA3937_RS21520	0.37	-1.0
4,902,546	-		DDA3937_RS21520	0.39	-0.4
4,902,559	+		DDA3937_RS21520	0.40	-0.7
4,902,560	-		DDA3937_RS21520	0.40	-1.2
4,902,579	+		DDA3937_RS21520	0.42	-0.6
4,902,579	+		DDA3937_RS21520	0.42	+0.1
4,902,579	+		DDA3937_RS21520	0.42	-2.1
4,902,579	+		DDA3937_RS21520	0.42	-0.2
4,902,579	+		DDA3937_RS21520	0.42	-0.1
4,902,579	+		DDA3937_RS21520	0.42	-1.6
4,902,579	+		DDA3937_RS21520	0.42	+2.3
4,902,580	-		DDA3937_RS21520	0.42	+2.0
4,902,580	-		DDA3937_RS21520	0.42	-0.8
4,902,580	-		DDA3937_RS21520	0.42	-0.7
4,902,583	-		DDA3937_RS21520	0.42	-1.7
4,902,629	+		DDA3937_RS21520	0.46	-1.5
4,902,629	+		DDA3937_RS21520	0.46	+0.1
4,902,688	+		DDA3937_RS21520	0.51	-0.9
4,902,689	-		DDA3937_RS21520	0.51	-1.5
4,902,705	-		DDA3937_RS21520	0.52	-1.1
4,902,719	+		DDA3937_RS21520	0.53	-1.0
4,902,719	+		DDA3937_RS21520	0.53	+0.6
4,902,719	+		DDA3937_RS21520	0.53	-1.4
4,902,719	+		DDA3937_RS21520	0.53	+1.0
4,902,719	+		DDA3937_RS21520	0.53	+0.1
4,902,719	+		DDA3937_RS21520	0.53	+0.6
4,902,719	+		DDA3937_RS21520	0.53	+0.3
4,902,719	+		DDA3937_RS21520	0.53	+0.2
4,902,719	+		DDA3937_RS21520	0.53	-0.5
4,902,720	-		DDA3937_RS21520	0.53	+0.4
4,902,720	-		DDA3937_RS21520	0.53	+0.4
4,902,720	-		DDA3937_RS21520	0.53	-1.7
4,902,720	-		DDA3937_RS21520	0.53	-2.0
4,902,720	-		DDA3937_RS21520	0.53	+0.0
4,902,772	+		DDA3937_RS21520	0.58	-0.6
4,902,772	+		DDA3937_RS21520	0.58	-0.3
4,902,772	+		DDA3937_RS21520	0.58	+0.9
4,902,772	+		DDA3937_RS21520	0.58	+1.5
4,902,964	-		DDA3937_RS21520	0.73	+1.1
4,902,964	-		DDA3937_RS21520	0.73	-2.9
4,902,964	-		DDA3937_RS21520	0.73	-1.2
4,902,964	-		DDA3937_RS21520	0.73	-0.2
4,903,018	+		DDA3937_RS21520	0.78	-0.1
4,903,018	+		DDA3937_RS21520	0.78	-0.6
4,903,019	-		DDA3937_RS21520	0.78	+0.8
4,903,019	-		DDA3937_RS21520	0.78	-0.7
4,903,021	+		DDA3937_RS21520	0.78	-0.5
4,903,022	-		DDA3937_RS21520	0.78	-1.7