Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20635

Experiment: Atlantic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS20630 and DDA3937_RS20635 are separated by 199 nucleotidesDDA3937_RS20635 and DDA3937_RS20640 are separated by 128 nucleotides DDA3937_RS20630: DDA3937_RS20630 - ABC transporter substrate-binding protein, at 4,692,925 to 4,694,520 _RS20630 DDA3937_RS20635: DDA3937_RS20635 - membrane dipeptidase, at 4,694,720 to 4,695,802 _RS20635 DDA3937_RS20640: DDA3937_RS20640 - LysR family transcriptional regulator, at 4,695,931 to 4,696,839 _RS20640 Position (kb) 4694 4695 4696Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4693.816 kb on - strand, within DDA3937_RS20630at 4693.987 kb on - strandat 4694.009 kb on + strand, within DDA3937_RS20630at 4694.009 kb on + strand, within DDA3937_RS20630at 4694.009 kb on + strand, within DDA3937_RS20630at 4694.010 kb on - strand, within DDA3937_RS20630at 4694.010 kb on - strand, within DDA3937_RS20630at 4694.010 kb on - strand, within DDA3937_RS20630at 4694.104 kb on - strand, within DDA3937_RS20630at 4694.162 kb on - strand, within DDA3937_RS20630at 4694.474 kb on - strandat 4694.474 kb on - strandat 4694.604 kb on + strandat 4694.656 kb on - strandat 4694.710 kb on + strandat 4694.710 kb on + strandat 4694.711 kb on - strandat 4694.924 kb on + strand, within DDA3937_RS20635at 4694.924 kb on + strand, within DDA3937_RS20635at 4694.924 kb on + strand, within DDA3937_RS20635at 4694.925 kb on - strand, within DDA3937_RS20635at 4694.925 kb on - strand, within DDA3937_RS20635at 4694.925 kb on - strand, within DDA3937_RS20635at 4694.925 kb on - strand, within DDA3937_RS20635at 4694.976 kb on + strand, within DDA3937_RS20635at 4694.977 kb on - strand, within DDA3937_RS20635at 4694.979 kb on + strand, within DDA3937_RS20635at 4695.184 kb on + strand, within DDA3937_RS20635at 4695.184 kb on + strand, within DDA3937_RS20635at 4695.191 kb on + strand, within DDA3937_RS20635at 4695.594 kb on + strand, within DDA3937_RS20635at 4695.594 kb on + strand, within DDA3937_RS20635at 4695.594 kb on + strand, within DDA3937_RS20635at 4695.595 kb on - strand, within DDA3937_RS20635at 4695.599 kb on + strand, within DDA3937_RS20635at 4695.599 kb on + strand, within DDA3937_RS20635at 4695.599 kb on + strand, within DDA3937_RS20635at 4695.600 kb on - strand, within DDA3937_RS20635at 4695.600 kb on - strand, within DDA3937_RS20635at 4695.600 kb on - strand, within DDA3937_RS20635at 4695.729 kb on - strandat 4695.778 kb on - strandat 4695.871 kb on + strandat 4695.930 kb on + strandat 4696.121 kb on + strand, within DDA3937_RS20640at 4696.144 kb on + strand, within DDA3937_RS20640at 4696.145 kb on - strand, within DDA3937_RS20640at 4696.262 kb on + strand, within DDA3937_RS20640at 4696.262 kb on + strand, within DDA3937_RS20640at 4696.263 kb on - strand, within DDA3937_RS20640at 4696.263 kb on - strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.423 kb on - strand, within DDA3937_RS20640at 4696.423 kb on - strand, within DDA3937_RS20640at 4696.423 kb on - strand, within DDA3937_RS20640at 4696.423 kb on - strand, within DDA3937_RS20640at 4696.423 kb on - strand, within DDA3937_RS20640at 4696.423 kb on - strand, within DDA3937_RS20640at 4696.423 kb on - strand, within DDA3937_RS20640at 4696.423 kb on - strand, within DDA3937_RS20640at 4696.423 kb on - strand, within DDA3937_RS20640at 4696.583 kb on - strand, within DDA3937_RS20640at 4696.583 kb on - strandat 4696.594 kb on + strand, within DDA3937_RS20640at 4696.595 kb on - strand, within DDA3937_RS20640at 4696.595 kb on - strand, within DDA3937_RS20640

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
remove
4,693,816 - DDA3937_RS20630 0.56 +0.4
4,693,987 - +1.0
4,694,009 + DDA3937_RS20630 0.68 +1.6
4,694,009 + DDA3937_RS20630 0.68 -2.0
4,694,009 + DDA3937_RS20630 0.68 -2.0
4,694,010 - DDA3937_RS20630 0.68 +0.6
4,694,010 - DDA3937_RS20630 0.68 +1.6
4,694,010 - DDA3937_RS20630 0.68 -0.6
4,694,104 - DDA3937_RS20630 0.74 -0.8
4,694,162 - DDA3937_RS20630 0.78 -0.6
4,694,474 - +0.4
4,694,474 - -1.4
4,694,604 + -1.0
4,694,656 - -1.6
4,694,710 + -1.7
4,694,710 + +0.3
4,694,711 - +0.4
4,694,924 + DDA3937_RS20635 0.19 -2.5
4,694,924 + DDA3937_RS20635 0.19 -1.4
4,694,924 + DDA3937_RS20635 0.19 +1.6
4,694,925 - DDA3937_RS20635 0.19 -0.1
4,694,925 - DDA3937_RS20635 0.19 +0.3
4,694,925 - DDA3937_RS20635 0.19 +0.5
4,694,925 - DDA3937_RS20635 0.19 -0.2
4,694,976 + DDA3937_RS20635 0.24 -0.4
4,694,977 - DDA3937_RS20635 0.24 -0.2
4,694,979 + DDA3937_RS20635 0.24 -1.8
4,695,184 + DDA3937_RS20635 0.43 +0.4
4,695,184 + DDA3937_RS20635 0.43 -1.0
4,695,191 + DDA3937_RS20635 0.43 +0.6
4,695,594 + DDA3937_RS20635 0.81 +0.1
4,695,594 + DDA3937_RS20635 0.81 -0.0
4,695,594 + DDA3937_RS20635 0.81 +1.8
4,695,595 - DDA3937_RS20635 0.81 +1.7
4,695,599 + DDA3937_RS20635 0.81 -0.5
4,695,599 + DDA3937_RS20635 0.81 -0.3
4,695,599 + DDA3937_RS20635 0.81 +1.9
4,695,600 - DDA3937_RS20635 0.81 +1.6
4,695,600 - DDA3937_RS20635 0.81 +0.6
4,695,600 - DDA3937_RS20635 0.81 +0.2
4,695,729 - -0.8
4,695,778 - +0.4
4,695,871 + +0.8
4,695,930 + +0.1
4,696,121 + DDA3937_RS20640 0.21 -0.8
4,696,144 + DDA3937_RS20640 0.23 -0.4
4,696,145 - DDA3937_RS20640 0.24 +2.7
4,696,262 + DDA3937_RS20640 0.36 +1.4
4,696,262 + DDA3937_RS20640 0.36 -0.9
4,696,263 - DDA3937_RS20640 0.37 -0.1
4,696,263 - DDA3937_RS20640 0.37 -2.0
4,696,422 + DDA3937_RS20640 0.54 -0.9
4,696,422 + DDA3937_RS20640 0.54 -1.0
4,696,422 + DDA3937_RS20640 0.54 -1.4
4,696,422 + DDA3937_RS20640 0.54 -0.6
4,696,422 + DDA3937_RS20640 0.54 -1.1
4,696,422 + DDA3937_RS20640 0.54 +0.2
4,696,422 + DDA3937_RS20640 0.54 +1.4
4,696,422 + DDA3937_RS20640 0.54 -0.8
4,696,422 + DDA3937_RS20640 0.54 -0.4
4,696,422 + DDA3937_RS20640 0.54 -0.6
4,696,423 - DDA3937_RS20640 0.54 -0.0
4,696,423 - DDA3937_RS20640 0.54 -1.2
4,696,423 - DDA3937_RS20640 0.54 +0.3
4,696,423 - DDA3937_RS20640 0.54 -1.2
4,696,423 - DDA3937_RS20640 0.54 -1.6
4,696,423 - DDA3937_RS20640 0.54 +0.6
4,696,423 - DDA3937_RS20640 0.54 -0.0
4,696,423 - DDA3937_RS20640 0.54 -1.1
4,696,423 - DDA3937_RS20640 0.54 -1.8
4,696,583 - DDA3937_RS20640 0.72 +3.5
4,696,583 - -0.8
4,696,594 + DDA3937_RS20640 0.73 -1.9
4,696,595 - DDA3937_RS20640 0.73 -1.4
4,696,595 - DDA3937_RS20640 0.73 -0.8

Or see this region's nucleotide sequence