Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20535

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,671,981	-				-2.3
4,672,009	+				-1.3
4,672,010	-				-1.3
4,672,010	-				-1.2
4,672,011	+				-2.0
4,672,011	+				-0.5
4,672,011	+				+0.9
4,672,011	+				-0.7
4,672,011	+				-1.4
4,672,011	+				+0.2
4,672,012	-				+0.1
4,672,012	-				+1.8
4,672,068	+				-1.0
4,672,068	+				-0.1
4,672,184	-		DDA3937_RS20530	0.16	-1.3
4,672,494	+		DDA3937_RS20530	0.68	-1.4
4,672,494	+		DDA3937_RS20530	0.68	+0.1
4,672,494	+		DDA3937_RS20530	0.68	-0.0
4,672,495	-		DDA3937_RS20530	0.68	-0.2
4,672,495	-		DDA3937_RS20530	0.68	-0.4
4,672,495	-		DDA3937_RS20530	0.68	-1.0
4,672,495	-		DDA3937_RS20530	0.68	-3.2
4,672,495	-		DDA3937_RS20530	0.68	-0.4
4,672,516	+		DDA3937_RS20530	0.72	-0.8
4,672,516	+		DDA3937_RS20530	0.72	-0.6
4,672,516	+		DDA3937_RS20530	0.72	-0.7
4,672,516	+		DDA3937_RS20530	0.72	+2.1
4,672,517	-		DDA3937_RS20530	0.72	-0.0
4,672,517	-		DDA3937_RS20530	0.72	+2.3
4,672,517	-		DDA3937_RS20530	0.72	-0.5
4,672,517	-		DDA3937_RS20530	0.72	-1.1
4,672,517	-		DDA3937_RS20530	0.72	-1.8
4,672,517	-		DDA3937_RS20530	0.72	-1.6
4,672,682	+				-0.0
4,672,715	+				+0.7
4,672,716	-				+1.6
4,672,716	-				-2.0
4,672,716	-				-0.8
4,672,729	+				+0.4
4,672,751	+				-0.0
4,672,752	-				+0.3
4,672,823	+		DDA3937_RS20535	0.11	-1.0
4,672,823	+		DDA3937_RS20535	0.11	-2.4
4,672,823	+		DDA3937_RS20535	0.11	+0.3
4,672,824	-		DDA3937_RS20535	0.12	-1.2
4,672,824	-				-0.0
4,672,824	-		DDA3937_RS20535	0.12	-2.4
4,672,827	+		DDA3937_RS20535	0.12	-1.0
4,672,827	+		DDA3937_RS20535	0.12	+0.6
4,672,827	+		DDA3937_RS20535	0.12	-0.3
4,672,828	-		DDA3937_RS20535	0.12	-0.6
4,672,828	-		DDA3937_RS20535	0.12	-0.3
4,672,828	-		DDA3937_RS20535	0.12	+1.6
4,672,848	+		DDA3937_RS20535	0.15	-0.6
4,672,848	+		DDA3937_RS20535	0.15	+0.6
4,672,848	+		DDA3937_RS20535	0.15	-2.4
4,672,849	-		DDA3937_RS20535	0.15	-2.7
4,672,849	-		DDA3937_RS20535	0.15	-1.2
4,672,849	-		DDA3937_RS20535	0.15	-0.6
4,672,849	-		DDA3937_RS20535	0.15	-2.1
4,672,849	-		DDA3937_RS20535	0.15	-1.3
4,672,882	+		DDA3937_RS20535	0.21	-1.0
4,673,034	+		DDA3937_RS20535	0.44	-1.9
4,673,034	+		DDA3937_RS20535	0.44	-3.1
4,673,034	+		DDA3937_RS20535	0.44	-1.8
4,673,035	-		DDA3937_RS20535	0.44	-0.4
4,673,035	-		DDA3937_RS20535	0.44	-0.3
4,673,035	-		DDA3937_RS20535	0.44	-1.4
4,673,109	-		DDA3937_RS20535	0.56	-2.4
4,673,177	+		DDA3937_RS20535	0.67	-1.9
4,673,194	+		DDA3937_RS20535	0.69	-2.7
4,673,194	+		DDA3937_RS20535	0.69	+0.1
4,673,194	+		DDA3937_RS20535	0.69	-4.4
4,673,194	+		DDA3937_RS20535	0.69	-3.0
4,673,195	-		DDA3937_RS20535	0.69	-1.5
4,673,234	+		DDA3937_RS20535	0.75	-1.9
4,673,234	+		DDA3937_RS20535	0.75	+0.3
4,673,234	+		DDA3937_RS20535	0.75	-3.9
4,673,234	+		DDA3937_RS20535	0.75	-0.0
4,673,234	+		DDA3937_RS20535	0.75	-1.8
4,673,235	-		DDA3937_RS20535	0.76	-1.6
4,673,235	-		DDA3937_RS20535	0.76	-2.1
4,673,235	-		DDA3937_RS20535	0.76	-0.9
4,673,235	-		DDA3937_RS20535	0.76	-0.0
4,673,235	-		DDA3937_RS20535	0.76	-1.3
4,673,235	-		DDA3937_RS20535	0.76	-1.4
4,673,255	-		DDA3937_RS20535	0.79	-1.4
4,673,294	+		DDA3937_RS20535	0.85	-2.9
4,673,294	+		DDA3937_RS20535	0.85	-2.0
4,673,322	+		DDA3937_RS20535	0.89	+1.0
4,673,381	+				-1.0
4,673,381	+				-0.0
4,673,382	-				+1.0
4,673,382	-				-1.7
4,673,448	+				-1.9
4,673,448	+				-0.8
4,673,448	+				-1.8
4,673,448	+				+0.7
4,673,448	+				-0.9
4,673,448	+				-1.3
4,673,448	+				-1.9
4,673,448	+				-1.1
4,673,448	+				-0.6
4,673,448	+				-0.4
4,673,448	+				+0.1
4,673,448	+				-2.5
4,673,449	-				-1.2
4,673,449	-				-1.8
4,673,449	-				-0.1
4,673,449	-				-0.7
4,673,449	-				-0.0
4,673,449	-				-1.5
4,673,449	-				-1.3
4,673,449	-				+0.3
4,673,449	-				+0.0
4,673,449	-				+1.0
4,673,449	-				+1.1
4,673,449	-				+0.4
4,673,449	-				-3.1
4,673,449	-				-0.4
4,673,453	+				-0.2
4,673,453	+				-1.0
4,673,454	-				-0.4
4,673,468	+				-1.5
4,673,469	-				+0.1
4,673,469	-				+1.4
4,673,469	-				+2.4
4,673,689	+		DDA3937_RS20540	0.26	+0.6
4,673,689	+		DDA3937_RS20540	0.26	-0.8
4,673,689	+		DDA3937_RS20540	0.26	-1.4
4,673,689	+				-0.8
4,673,690	-		DDA3937_RS20540	0.26	+0.5
4,673,690	-		DDA3937_RS20540	0.26	-1.4
4,673,733	+		DDA3937_RS20540	0.32	+0.3
4,673,733	+		DDA3937_RS20540	0.32	+0.7
4,673,733	+		DDA3937_RS20540	0.32	+0.1
4,673,734	-		DDA3937_RS20540	0.32	-0.7
4,673,734	-		DDA3937_RS20540	0.32	-0.0
4,673,882	+		DDA3937_RS20540	0.53	+1.6
4,673,882	+		DDA3937_RS20540	0.53	-0.2
4,673,882	+		DDA3937_RS20540	0.53	+0.4
4,673,882	+		DDA3937_RS20540	0.53	+0.6
4,673,882	+		DDA3937_RS20540	0.53	-0.0
4,673,882	+		DDA3937_RS20540	0.53	-0.0
4,673,882	+		DDA3937_RS20540	0.53	+1.2
4,673,882	+		DDA3937_RS20540	0.53	-0.4
4,673,882	+		DDA3937_RS20540	0.53	+0.3
4,673,883	-		DDA3937_RS20540	0.53	-0.7
4,673,883	-		DDA3937_RS20540	0.53	+0.8
4,673,883	-		DDA3937_RS20540	0.53	-1.8
4,673,883	-		DDA3937_RS20540	0.53	-1.0
4,673,883	-		DDA3937_RS20540	0.53	+0.6
4,673,883	-		DDA3937_RS20540	0.53	-0.9
4,673,883	-		DDA3937_RS20540	0.53	-2.3
4,673,890	+		DDA3937_RS20540	0.54	-1.0
4,673,891	-		DDA3937_RS20540	0.54	-2.0
4,673,891	-		DDA3937_RS20540	0.54	-1.0
4,673,891	-		DDA3937_RS20540	0.54	-0.2
4,673,960	+		DDA3937_RS20540	0.64	-0.2
4,674,012	-		DDA3937_RS20540	0.71	+0.4
4,674,026	+		DDA3937_RS20540	0.73	+0.2
4,674,026	+		DDA3937_RS20540	0.73	-0.9
4,674,026	+		DDA3937_RS20540	0.73	+0.7
4,674,027	-		DDA3937_RS20540	0.73	+2.0
4,674,027	-		DDA3937_RS20540	0.73	-0.4
4,674,027	-		DDA3937_RS20540	0.73	+0.2
4,674,027	-		DDA3937_RS20540	0.73	+0.7
4,674,031	+		DDA3937_RS20540	0.74	-1.0
4,674,032	-		DDA3937_RS20540	0.74	+0.8
4,674,090	+		DDA3937_RS20540	0.82	-0.9
4,674,090	+		DDA3937_RS20540	0.82	-0.5
4,674,091	-		DDA3937_RS20540	0.82	-1.2
4,674,242	+				+0.8
4,674,243	-				-1.4
4,674,243	-				+1.2
4,674,257	+				-0.0
4,674,257	+				-0.1
4,674,257	+				-0.2
4,674,258	-				-0.2
4,674,258	-				-1.7
4,674,258	-				+1.6
4,674,259	+				-0.1
4,674,260	-				-1.4
4,674,365	+				-0.2
4,674,365	+				+1.2
4,674,365	+				-1.4
4,674,365	+				+0.2
4,674,365	+				-0.4
4,674,365	+				-1.6
4,674,365	+				-0.4
4,674,365	+				+1.0
4,674,366	-				-0.2
4,674,366	-				-0.8
4,674,366	-				-3.0
4,674,383	+				+0.8