Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18405 and DDA3937_RS18410 are separated by 3 nucleotides DDA3937_RS18410 and DDA3937_RS18415 are separated by 2 nucleotides DDA3937_RS18415 and DDA3937_RS18420 are separated by 434 nucleotides
DDA3937_RS18405: DDA3937_RS18405 - threonine synthase, at 4,204,506 to 4,205,795
_RS18405
DDA3937_RS18410: DDA3937_RS18410 - homoserine kinase, at 4,205,799 to 4,206,728
_RS18410
DDA3937_RS18415: DDA3937_RS18415 - bifunctional aspartate kinase/homoserine dehydrogenase I, at 4,206,731 to 4,209,187
_RS18415
DDA3937_RS18420: DDA3937_RS18420 - tRNA/rRNA methyltransferase, at 4,209,622 to 4,210,323
_RS18420
Position (kb) 4206
4207
4208
4209
4210 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 4205.785 kb on + strand at 4205.786 kb on - strand at 4205.786 kb on - strand at 4205.786 kb on - strand at 4205.840 kb on + strand at 4205.840 kb on + strand at 4205.841 kb on - strand at 4205.841 kb on - strand at 4205.841 kb on - strand at 4205.841 kb on - strand at 4205.841 kb on - strand at 4205.841 kb on - strand at 4205.870 kb on - strand at 4205.870 kb on - strand at 4205.915 kb on + strand, within DDA3937_RS18410 at 4205.915 kb on + strand, within DDA3937_RS18410 at 4205.915 kb on + strand, within DDA3937_RS18410 at 4205.915 kb on + strand, within DDA3937_RS18410 at 4205.916 kb on - strand, within DDA3937_RS18410 at 4205.916 kb on - strand, within DDA3937_RS18410 at 4206.029 kb on - strand, within DDA3937_RS18410 at 4206.145 kb on + strand, within DDA3937_RS18410 at 4206.146 kb on - strand, within DDA3937_RS18410 at 4206.311 kb on - strand at 4206.532 kb on + strand, within DDA3937_RS18410 at 4206.532 kb on + strand, within DDA3937_RS18410 at 4206.533 kb on - strand, within DDA3937_RS18410 at 4206.533 kb on - strand, within DDA3937_RS18410 at 4206.533 kb on - strand, within DDA3937_RS18410 at 4206.596 kb on + strand, within DDA3937_RS18410 at 4206.791 kb on + strand at 4206.840 kb on + strand at 4206.841 kb on - strand at 4206.841 kb on - strand at 4206.841 kb on - strand at 4206.841 kb on - strand at 4206.852 kb on + strand at 4206.853 kb on - strand at 4206.853 kb on - strand at 4206.957 kb on + strand at 4206.957 kb on + strand at 4206.958 kb on - strand at 4206.958 kb on - strand at 4206.958 kb on - strand at 4206.958 kb on - strand at 4206.970 kb on + strand at 4206.970 kb on + strand at 4206.971 kb on - strand at 4207.113 kb on + strand, within DDA3937_RS18415 at 4207.114 kb on - strand, within DDA3937_RS18415 at 4207.114 kb on - strand, within DDA3937_RS18415 at 4207.261 kb on + strand, within DDA3937_RS18415 at 4207.285 kb on + strand, within DDA3937_RS18415 at 4207.285 kb on + strand, within DDA3937_RS18415 at 4207.285 kb on + strand, within DDA3937_RS18415 at 4207.286 kb on - strand, within DDA3937_RS18415 at 4207.286 kb on - strand, within DDA3937_RS18415 at 4207.286 kb on - strand, within DDA3937_RS18415 at 4207.374 kb on + strand, within DDA3937_RS18415 at 4207.374 kb on + strand, within DDA3937_RS18415 at 4207.375 kb on - strand, within DDA3937_RS18415 at 4207.375 kb on - strand, within DDA3937_RS18415 at 4207.375 kb on - strand, within DDA3937_RS18415 at 4207.422 kb on + strand, within DDA3937_RS18415 at 4207.422 kb on + strand, within DDA3937_RS18415 at 4207.425 kb on + strand, within DDA3937_RS18415 at 4207.425 kb on + strand, within DDA3937_RS18415 at 4207.498 kb on - strand, within DDA3937_RS18415 at 4207.498 kb on - strand, within DDA3937_RS18415 at 4207.525 kb on + strand, within DDA3937_RS18415 at 4207.525 kb on + strand, within DDA3937_RS18415 at 4207.558 kb on - strand, within DDA3937_RS18415 at 4207.558 kb on - strand, within DDA3937_RS18415 at 4207.847 kb on + strand, within DDA3937_RS18415 at 4207.866 kb on - strand, within DDA3937_RS18415 at 4207.866 kb on - strand, within DDA3937_RS18415 at 4208.052 kb on + strand, within DDA3937_RS18415 at 4208.052 kb on + strand, within DDA3937_RS18415 at 4208.052 kb on + strand, within DDA3937_RS18415 at 4208.053 kb on - strand, within DDA3937_RS18415 at 4208.121 kb on + strand, within DDA3937_RS18415 at 4208.121 kb on + strand, within DDA3937_RS18415 at 4208.121 kb on + strand, within DDA3937_RS18415 at 4208.122 kb on - strand, within DDA3937_RS18415 at 4208.122 kb on - strand, within DDA3937_RS18415 at 4208.436 kb on + strand, within DDA3937_RS18415 at 4208.490 kb on + strand, within DDA3937_RS18415 at 4208.490 kb on + strand, within DDA3937_RS18415 at 4208.491 kb on - strand, within DDA3937_RS18415 at 4208.491 kb on - strand, within DDA3937_RS18415 at 4208.491 kb on - strand, within DDA3937_RS18415 at 4208.491 kb on - strand, within DDA3937_RS18415 at 4208.491 kb on - strand, within DDA3937_RS18415 at 4208.602 kb on + strand, within DDA3937_RS18415 at 4208.603 kb on - strand, within DDA3937_RS18415 at 4208.603 kb on - strand, within DDA3937_RS18415 at 4208.710 kb on - strand, within DDA3937_RS18415 at 4208.710 kb on - strand, within DDA3937_RS18415 at 4208.777 kb on + strand, within DDA3937_RS18415 at 4208.778 kb on - strand, within DDA3937_RS18415 at 4208.822 kb on - strand, within DDA3937_RS18415 at 4208.894 kb on - strand, within DDA3937_RS18415 at 4208.929 kb on - strand, within DDA3937_RS18415 at 4208.929 kb on - strand, within DDA3937_RS18415 at 4208.929 kb on - strand, within DDA3937_RS18415 at 4208.999 kb on - strand at 4209.011 kb on - strand at 4209.019 kb on + strand at 4209.019 kb on + strand at 4209.019 kb on + strand at 4209.020 kb on - strand at 4209.020 kb on - strand at 4209.261 kb on + strand at 4209.261 kb on + strand at 4209.261 kb on + strand at 4209.262 kb on - strand at 4209.262 kb on - strand at 4209.262 kb on - strand at 4209.262 kb on - strand at 4209.262 kb on - strand at 4209.264 kb on + strand at 4209.265 kb on - strand at 4209.283 kb on + strand at 4209.284 kb on - strand at 4209.294 kb on + strand at 4209.294 kb on + strand at 4209.295 kb on - strand at 4209.351 kb on - strand at 4209.388 kb on + strand at 4209.388 kb on + strand at 4209.388 kb on + strand at 4209.391 kb on + strand at 4209.391 kb on + strand at 4209.391 kb on + strand at 4209.391 kb on + strand at 4209.391 kb on + strand at 4209.392 kb on - strand at 4209.392 kb on - strand at 4209.392 kb on - strand at 4209.392 kb on - strand at 4209.392 kb on - strand at 4209.392 kb on - strand at 4209.394 kb on + strand at 4209.394 kb on + strand at 4209.395 kb on - strand at 4209.395 kb on - strand at 4209.395 kb on - strand at 4209.395 kb on - strand at 4209.406 kb on + strand at 4209.433 kb on - strand at 4209.443 kb on + strand at 4209.444 kb on - strand at 4209.465 kb on + strand at 4209.465 kb on + strand at 4209.465 kb on + strand at 4209.466 kb on - strand at 4209.468 kb on + strand at 4209.468 kb on + strand at 4209.468 kb on + strand at 4209.468 kb on + strand at 4209.468 kb on + strand at 4209.468 kb on + strand at 4209.468 kb on + strand at 4209.469 kb on - strand at 4209.469 kb on - strand at 4209.469 kb on - strand at 4209.469 kb on - strand at 4209.469 kb on - strand at 4209.469 kb on - strand at 4209.469 kb on - strand at 4209.472 kb on + strand at 4209.490 kb on - strand at 4209.507 kb on + strand at 4209.524 kb on + strand at 4209.525 kb on - strand at 4209.706 kb on + strand, within DDA3937_RS18420 at 4209.867 kb on - strand, within DDA3937_RS18420 at 4209.867 kb on - strand, within DDA3937_RS18420 at 4209.872 kb on + strand, within DDA3937_RS18420 at 4209.872 kb on + strand, within DDA3937_RS18420 at 4209.872 kb on + strand, within DDA3937_RS18420 at 4209.872 kb on + strand, within DDA3937_RS18420 at 4209.872 kb on + strand, within DDA3937_RS18420 at 4209.872 kb on + strand, within DDA3937_RS18420 at 4209.872 kb on + strand, within DDA3937_RS18420 at 4209.872 kb on + strand, within DDA3937_RS18420 at 4209.872 kb on + strand, within DDA3937_RS18420 at 4209.872 kb on + strand, within DDA3937_RS18420 at 4209.873 kb on - strand, within DDA3937_RS18420 at 4209.873 kb on - strand, within DDA3937_RS18420 at 4209.873 kb on - strand, within DDA3937_RS18420 at 4209.873 kb on - strand, within DDA3937_RS18420 at 4209.873 kb on - strand, within DDA3937_RS18420 at 4209.873 kb on - strand, within DDA3937_RS18420 at 4209.873 kb on - strand, within DDA3937_RS18420 at 4209.873 kb on - strand, within DDA3937_RS18420 at 4209.991 kb on + strand, within DDA3937_RS18420 at 4209.991 kb on + strand, within DDA3937_RS18420 at 4210.061 kb on + strand, within DDA3937_RS18420 at 4210.061 kb on + strand, within DDA3937_RS18420 at 4210.061 kb on + strand, within DDA3937_RS18420 at 4210.062 kb on - strand at 4210.064 kb on + strand, within DDA3937_RS18420 at 4210.064 kb on + strand, within DDA3937_RS18420 at 4210.065 kb on - strand, within DDA3937_RS18420 at 4210.104 kb on + strand, within DDA3937_RS18420 at 4210.150 kb on + strand, within DDA3937_RS18420 at 4210.150 kb on + strand, within DDA3937_RS18420
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 4,205,785 + -1.2 4,205,786 - -2.0 4,205,786 - -4.0 4,205,786 - -3.9 4,205,840 + -1.7 4,205,840 + -1.5 4,205,841 - -1.3 4,205,841 - -1.6 4,205,841 - -3.3 4,205,841 - -3.2 4,205,841 - -2.2 4,205,841 - -1.8 4,205,870 - -4.5 4,205,870 - -2.0 4,205,915 + DDA3937_RS18410 0.12 +0.2 4,205,915 + DDA3937_RS18410 0.12 -0.4 4,205,915 + DDA3937_RS18410 0.12 -1.8 4,205,915 + DDA3937_RS18410 0.12 +0.5 4,205,916 - DDA3937_RS18410 0.13 -1.3 4,205,916 - DDA3937_RS18410 0.13 -3.2 4,206,029 - DDA3937_RS18410 0.25 -3.2 4,206,145 + DDA3937_RS18410 0.37 -3.2 4,206,146 - DDA3937_RS18410 0.37 -2.5 4,206,311 - -0.1 4,206,532 + DDA3937_RS18410 0.79 -0.6 4,206,532 + DDA3937_RS18410 0.79 -2.9 4,206,533 - DDA3937_RS18410 0.79 -0.2 4,206,533 - DDA3937_RS18410 0.79 -2.7 4,206,533 - DDA3937_RS18410 0.79 -0.5 4,206,596 + DDA3937_RS18410 0.86 -1.5 4,206,791 + -3.0 4,206,840 + -1.4 4,206,841 - -1.8 4,206,841 - -1.4 4,206,841 - -3.0 4,206,841 - -2.8 4,206,852 + -1.5 4,206,853 - +0.2 4,206,853 - -2.8 4,206,957 + -3.0 4,206,957 + -0.8 4,206,958 - -0.8 4,206,958 - -2.3 4,206,958 - -1.6 4,206,958 - +0.9 4,206,970 + -2.3 4,206,970 + -1.0 4,206,971 - -2.2 4,207,113 + DDA3937_RS18415 0.16 -2.0 4,207,114 - DDA3937_RS18415 0.16 -1.7 4,207,114 - DDA3937_RS18415 0.16 -2.7 4,207,261 + DDA3937_RS18415 0.22 -2.6 4,207,285 + DDA3937_RS18415 0.23 +0.1 4,207,285 + DDA3937_RS18415 0.23 -1.7 4,207,285 + DDA3937_RS18415 0.23 -1.8 4,207,286 - DDA3937_RS18415 0.23 -2.2 4,207,286 - DDA3937_RS18415 0.23 -0.6 4,207,286 - DDA3937_RS18415 0.23 -2.6 4,207,374 + DDA3937_RS18415 0.26 -2.3 4,207,374 + DDA3937_RS18415 0.26 -2.6 4,207,375 - DDA3937_RS18415 0.26 -2.3 4,207,375 - DDA3937_RS18415 0.26 +0.0 4,207,375 - DDA3937_RS18415 0.26 -2.9 4,207,422 + DDA3937_RS18415 0.28 -4.2 4,207,422 + DDA3937_RS18415 0.28 -1.7 4,207,425 + DDA3937_RS18415 0.28 -2.1 4,207,425 + DDA3937_RS18415 0.28 -1.7 4,207,498 - DDA3937_RS18415 0.31 -1.9 4,207,498 - DDA3937_RS18415 0.31 -2.0 4,207,525 + DDA3937_RS18415 0.32 -0.1 4,207,525 + DDA3937_RS18415 0.32 -1.7 4,207,558 - DDA3937_RS18415 0.34 -1.4 4,207,558 - DDA3937_RS18415 0.34 -2.1 4,207,847 + DDA3937_RS18415 0.45 -1.2 4,207,866 - DDA3937_RS18415 0.46 +0.3 4,207,866 - DDA3937_RS18415 0.46 -4.2 4,208,052 + DDA3937_RS18415 0.54 -2.4 4,208,052 + DDA3937_RS18415 0.54 -1.1 4,208,052 + DDA3937_RS18415 0.54 -1.3 4,208,053 - DDA3937_RS18415 0.54 -2.5 4,208,121 + DDA3937_RS18415 0.57 -3.7 4,208,121 + DDA3937_RS18415 0.57 -3.3 4,208,121 + DDA3937_RS18415 0.57 -1.9 4,208,122 - DDA3937_RS18415 0.57 -3.6 4,208,122 - DDA3937_RS18415 0.57 -0.8 4,208,436 + DDA3937_RS18415 0.69 -2.2 4,208,490 + DDA3937_RS18415 0.72 -1.3 4,208,490 + DDA3937_RS18415 0.72 -0.7 4,208,491 - DDA3937_RS18415 0.72 +1.5 4,208,491 - DDA3937_RS18415 0.72 -0.5 4,208,491 - DDA3937_RS18415 0.72 -1.8 4,208,491 - DDA3937_RS18415 0.72 -2.0 4,208,491 - DDA3937_RS18415 0.72 +0.9 4,208,602 + DDA3937_RS18415 0.76 -1.1 4,208,603 - DDA3937_RS18415 0.76 -0.8 4,208,603 - DDA3937_RS18415 0.76 -0.1 4,208,710 - DDA3937_RS18415 0.81 -0.1 4,208,710 - DDA3937_RS18415 0.81 +0.9 4,208,777 + DDA3937_RS18415 0.83 -3.9 4,208,778 - DDA3937_RS18415 0.83 -0.1 4,208,822 - DDA3937_RS18415 0.85 -0.5 4,208,894 - DDA3937_RS18415 0.88 +1.0 4,208,929 - DDA3937_RS18415 0.89 -1.3 4,208,929 - DDA3937_RS18415 0.89 -0.4 4,208,929 - DDA3937_RS18415 0.89 -1.8 4,208,999 - +0.2 4,209,011 - +2.5 4,209,019 + -2.4 4,209,019 + -0.7 4,209,019 + -2.5 4,209,020 - -0.1 4,209,020 - -3.4 4,209,261 + -2.6 4,209,261 + -2.4 4,209,261 + -1.9 4,209,262 - -3.0 4,209,262 - +0.1 4,209,262 - -1.1 4,209,262 - +0.3 4,209,262 - -0.7 4,209,264 + -5.1 4,209,265 - -0.7 4,209,283 + -2.3 4,209,284 - -0.6 4,209,294 + -1.4 4,209,294 + -1.1 4,209,295 - -1.8 4,209,351 - +0.6 4,209,388 + +0.5 4,209,388 + -3.1 4,209,388 + -0.2 4,209,391 + -0.5 4,209,391 + -2.0 4,209,391 + -0.3 4,209,391 + +1.0 4,209,391 + -3.1 4,209,392 - -0.8 4,209,392 - -0.8 4,209,392 - +0.4 4,209,392 - +0.6 4,209,392 - -2.1 4,209,392 - -0.2 4,209,394 + -2.2 4,209,394 + +1.5 4,209,395 - -1.2 4,209,395 - +1.4 4,209,395 - -0.6 4,209,395 - -2.8 4,209,406 + -1.5 4,209,433 - +0.5 4,209,443 + -2.1 4,209,444 - -0.1 4,209,465 + -2.4 4,209,465 + -3.4 4,209,465 + -0.5 4,209,466 - +2.2 4,209,468 + -2.1 4,209,468 + -2.5 4,209,468 + -4.0 4,209,468 + -1.7 4,209,468 + -1.3 4,209,468 + -2.8 4,209,468 + -1.7 4,209,469 - -2.5 4,209,469 - +0.2 4,209,469 - -0.4 4,209,469 - +1.0 4,209,469 - +0.2 4,209,469 - -1.5 4,209,469 - -0.1 4,209,472 + -2.4 4,209,490 - +0.5 4,209,507 + -0.3 4,209,524 + +1.1 4,209,525 - +1.3 4,209,706 + DDA3937_RS18420 0.12 -0.4 4,209,867 - DDA3937_RS18420 0.35 +0.7 4,209,867 - DDA3937_RS18420 0.35 -0.5 4,209,872 + DDA3937_RS18420 0.36 +1.5 4,209,872 + DDA3937_RS18420 0.36 +1.1 4,209,872 + DDA3937_RS18420 0.36 +1.7 4,209,872 + DDA3937_RS18420 0.36 -0.5 4,209,872 + DDA3937_RS18420 0.36 +2.4 4,209,872 + DDA3937_RS18420 0.36 +1.1 4,209,872 + DDA3937_RS18420 0.36 +0.6 4,209,872 + DDA3937_RS18420 0.36 +0.3 4,209,872 + DDA3937_RS18420 0.36 -1.8 4,209,872 + DDA3937_RS18420 0.36 +0.1 4,209,873 - DDA3937_RS18420 0.36 +1.5 4,209,873 - DDA3937_RS18420 0.36 -0.1 4,209,873 - DDA3937_RS18420 0.36 -1.3 4,209,873 - DDA3937_RS18420 0.36 +1.2 4,209,873 - DDA3937_RS18420 0.36 -0.2 4,209,873 - DDA3937_RS18420 0.36 +0.4 4,209,873 - DDA3937_RS18420 0.36 +0.5 4,209,873 - DDA3937_RS18420 0.36 +2.5 4,209,991 + DDA3937_RS18420 0.53 +0.2 4,209,991 + DDA3937_RS18420 0.53 -0.1 4,210,061 + DDA3937_RS18420 0.63 -2.1 4,210,061 + DDA3937_RS18420 0.63 -0.8 4,210,061 + DDA3937_RS18420 0.63 -1.5 4,210,062 - +2.1 4,210,064 + DDA3937_RS18420 0.63 -0.1 4,210,064 + DDA3937_RS18420 0.63 -0.5 4,210,065 - DDA3937_RS18420 0.63 -0.4 4,210,104 + DDA3937_RS18420 0.69 -1.3 4,210,150 + DDA3937_RS18420 0.75 -0.8 4,210,150 + DDA3937_RS18420 0.75 -0.6
Or see this region's nucleotide sequence