Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18230

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,159,051	+		DDA3937_RS18225	0.64	-0.3
4,159,052	-		DDA3937_RS18225	0.64	+0.5
4,159,052	-		DDA3937_RS18225	0.64	-1.0
4,159,052	-		DDA3937_RS18225	0.64	-0.8
4,159,127	+		DDA3937_RS18225	0.71	+1.3
4,159,142	+		DDA3937_RS18225	0.72	+0.1
4,159,142	+		DDA3937_RS18225	0.72	-1.0
4,159,143	-		DDA3937_RS18225	0.72	-0.2
4,159,359	+				+0.2
4,159,436	+				+2.5
4,159,478	+				+0.7
4,159,478	+				+1.1
4,159,479	-				+0.4
4,159,479	-				+0.3
4,159,479	-				-1.3
4,159,513	+				-0.9
4,159,513	+				+0.5
4,159,513	+				-0.9
4,159,513	+				-0.1
4,159,514	-				-1.6
4,159,514	-				-2.3
4,159,514	-				+1.4
4,159,524	-				-1.3
4,159,524	-				-0.6
4,159,549	-				+2.9
4,159,581	+				+0.4
4,159,582	-				+0.1
4,159,595	+				-0.4
4,159,616	+				+2.4
4,159,649	+				-0.3
4,159,650	-				-0.1
4,159,650	-				-0.3
4,159,695	+				-0.4
4,159,695	+				-1.1
4,159,695	+				+0.4
4,159,695	+				-1.7
4,159,695	+				-1.5
4,159,696	-				+0.6
4,159,696	-				-1.9
4,159,714	+				+1.5
4,159,775	-				-0.5
4,159,804	+				-0.1
4,159,804	+				+0.1
4,159,804	+				+1.1
4,159,804	+				+2.3
4,159,805	-				+0.9
4,159,805	-				+1.0
4,159,805	-				-1.7
4,159,818	+				-0.6
4,159,895	-				-1.7
4,159,906	-				-0.6
4,159,909	+				-1.9
4,159,955	+				+0.1
4,159,955	+				+1.1
4,159,983	+				-0.9
4,159,983	+				+0.1
4,159,984	-				-1.3
4,159,987	+				+2.5
4,159,987	+				-0.4
4,159,988	-				-0.9
4,159,995	+				-0.9
4,160,005	+				+0.0
4,160,005	+				-0.5
4,160,005	+				+1.0
4,160,005	+				+0.1
4,160,005	+				-0.8
4,160,006	-				-1.3
4,160,006	-				+0.0
4,160,156	+				-1.5
4,160,156	+				-1.7
4,160,293	+		DDA3937_RS18230	0.11	+0.3
4,160,293	+		DDA3937_RS18230	0.11	-0.3
4,160,293	+		DDA3937_RS18230	0.11	+0.3
4,160,294	-		DDA3937_RS18230	0.11	+0.0
4,160,294	-		DDA3937_RS18230	0.11	-0.9
4,160,294	-		DDA3937_RS18230	0.11	-1.3
4,160,360	-		DDA3937_RS18230	0.14	+1.5
4,160,406	+		DDA3937_RS18230	0.16	-1.0
4,160,406	+		DDA3937_RS18230	0.16	-0.1
4,160,548	+		DDA3937_RS18230	0.21	-0.1
4,160,548	+		DDA3937_RS18230	0.21	-0.0
4,160,548	+		DDA3937_RS18230	0.21	-0.1
4,160,549	-		DDA3937_RS18230	0.22	+1.7
4,160,549	-		DDA3937_RS18230	0.22	-0.4
4,160,589	+		DDA3937_RS18230	0.23	-0.1
4,160,589	+		DDA3937_RS18230	0.23	+0.4
4,160,590	-		DDA3937_RS18230	0.23	-0.5
4,160,590	-		DDA3937_RS18230	0.23	+1.5
4,160,590	-		DDA3937_RS18230	0.23	-0.3
4,160,590	-		DDA3937_RS18230	0.23	+0.5
4,160,644	+		DDA3937_RS18230	0.26	-1.2
4,160,644	+		DDA3937_RS18230	0.26	+6.0
4,160,644	+		DDA3937_RS18230	0.26	+0.6
4,160,698	+		DDA3937_RS18230	0.28	-1.6
4,160,698	+		DDA3937_RS18230	0.28	+0.3
4,160,698	+		DDA3937_RS18230	0.28	-1.8
4,160,699	-		DDA3937_RS18230	0.28	-0.7
4,160,699	-		DDA3937_RS18230	0.28	-0.5
4,161,046	+		DDA3937_RS18230	0.42	-0.7
4,161,046	+		DDA3937_RS18230	0.42	+0.4
4,161,046	+		DDA3937_RS18230	0.42	-0.2
4,161,185	-		DDA3937_RS18230	0.48	-0.1
4,161,185	-		DDA3937_RS18230	0.48	+0.9
4,161,262	+		DDA3937_RS18230	0.52	-0.1
4,161,313	+		DDA3937_RS18230	0.54	-0.8
4,161,314	-		DDA3937_RS18230	0.54	-0.0
4,161,314	-		DDA3937_RS18230	0.54	+0.3
4,161,314	-		DDA3937_RS18230	0.54	-0.1
4,161,326	-		DDA3937_RS18230	0.54	+1.1
4,161,326	-		DDA3937_RS18230	0.54	-1.6
4,161,408	-		DDA3937_RS18230	0.58	+1.7
4,161,554	-		DDA3937_RS18230	0.64	-0.3
4,161,554	-		DDA3937_RS18230	0.64	+0.2
4,161,554	-		DDA3937_RS18230	0.64	-0.5
4,161,682	+		DDA3937_RS18230	0.69	-1.1
4,161,714	+		DDA3937_RS18230	0.71	+0.1
4,161,769	+		DDA3937_RS18230	0.73	+1.1
4,161,769	+		DDA3937_RS18230	0.73	-2.5
4,161,769	+		DDA3937_RS18230	0.73	-0.4
4,161,769	+		DDA3937_RS18230	0.73	-2.3
4,161,769	+		DDA3937_RS18230	0.73	-0.7
4,161,769	+		DDA3937_RS18230	0.73	-0.9
4,161,770	-		DDA3937_RS18230	0.73	-0.5
4,161,770	-		DDA3937_RS18230	0.73	+0.1
4,161,770	-		DDA3937_RS18230	0.73	+0.8
4,161,838	+		DDA3937_RS18230	0.76	-0.1
4,162,015	+		DDA3937_RS18230	0.83	-1.3
4,162,015	+		DDA3937_RS18230	0.83	-1.1
4,162,042	+		DDA3937_RS18230	0.84	-0.1
4,162,063	+		DDA3937_RS18230	0.85	+4.9
4,162,063	+		DDA3937_RS18230	0.85	+0.1
4,162,063	+		DDA3937_RS18230	0.85	-2.1
4,162,063	+		DDA3937_RS18230	0.85	-2.4
4,162,064	-		DDA3937_RS18230	0.85	-0.9
4,162,108	+				+0.5
4,162,108	+		DDA3937_RS18230	0.87	+1.9
4,162,166	+		DDA3937_RS18230	0.90	-0.9
4,162,205	-				-0.5
4,162,246	+				+0.1
4,162,246	+				-2.3
4,162,246	+				-1.3
4,162,246	+				-0.2
4,162,246	+				-0.4
4,162,246	+				+0.3
4,162,246	+				-0.1
4,162,246	+				-0.7
4,162,246	+				+0.1
4,162,246	+				+0.1
4,162,247	-				-0.8
4,162,247	-				-1.1
4,162,247	-				+2.9
4,162,247	-				-2.3
4,162,247	-				-0.3
4,162,247	-				+0.6
4,162,247	-				-2.2
4,162,303	+				-1.5
4,162,304	-				-0.7
4,162,304	-				-0.9
4,162,312	+				-0.5
4,162,313	-				-1.6
4,162,313	-				-2.1
4,162,347	+				-0.9
4,162,347	+				-3.0
4,162,348	-				-0.5
4,162,348	-				-2.4
4,162,377	+				+2.1
4,162,377	+				-1.1
4,162,377	+				+1.1
4,162,378	-				-2.8
4,162,378	-				+0.9
4,162,404	-				+1.2
4,162,404	-				-0.9
4,162,408	+				-0.5
4,162,409	-				+0.8
4,162,409	-				+0.0
4,162,461	-				+0.5
4,162,461	-				-1.1
4,162,505	+				-0.2
4,162,506	-				-0.3
4,162,520	+				-0.5
4,162,520	+				+1.5
4,162,520	+				-0.2
4,162,521	-				-2.5
4,162,521	-				-0.4
4,162,521	-				+2.1
4,162,607	+				-1.6
4,162,674	+				-0.2
4,162,675	-				+0.5
4,162,675	-				+0.9
4,162,675	-				-0.5
4,162,675	-				+0.8
4,162,681	+				-0.5
4,162,682	-				-0.6
4,162,690	+				-0.7
4,162,690	+				-1.3
4,162,690	+				+0.1
4,162,691	-				-0.1
4,162,691	-				+0.5
4,162,691	-				-0.5
4,162,808	+				+2.1
4,162,809	-				+1.2
4,162,858	+				-1.3
4,162,859	-				-0.8
4,162,865	-				-0.1
4,162,887	+				+1.5
4,162,888	-				+3.5
4,162,888	-				-0.1
4,162,888	-				+4.8
4,162,928	+				-0.4
4,162,928	+				+0.3
4,162,928	+				-0.1
4,162,928	+				+0.2
4,162,928	+				-0.9
4,162,928	+				-2.0
4,162,928	+				+0.9
4,162,928	+				+0.7
4,162,929	-				-0.3
4,162,929	-				-1.0
4,162,929	-				+0.9
4,162,929	-				-0.5
4,163,005	+		DDA3937_RS18235	0.11	-0.6
4,163,005	+		DDA3937_RS18235	0.11	-1.0
4,163,006	-		DDA3937_RS18235	0.11	+0.9