Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18115

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS18110 and DDA3937_RS23335 are separated by 230 nucleotidesDDA3937_RS23335 and DDA3937_RS18115 are separated by 96 nucleotidesDDA3937_RS18115 and DDA3937_RS18120 overlap by 1 nucleotides DDA3937_RS18110: DDA3937_RS18110 - long-chain fatty acid--CoA ligase, at 4,133,513 to 4,135,318 _RS18110 DDA3937_RS23335: DDA3937_RS23335 - leu operon leader peptide, at 4,135,549 to 4,135,632 _RS23335 DDA3937_RS18115: DDA3937_RS18115 - 2-isopropylmalate synthase, at 4,135,729 to 4,137,303 _RS18115 DDA3937_RS18120: DDA3937_RS18120 - 3-isopropylmalate dehydrogenase, at 4,137,303 to 4,138,394 _RS18120 Position (kb) 4135 4136 4137 4138Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4134.752 kb on - strand, within DDA3937_RS18110at 4134.752 kb on - strand, within DDA3937_RS18110at 4134.753 kb on + strand, within DDA3937_RS18110at 4134.753 kb on + strandat 4134.753 kb on + strand, within DDA3937_RS18110at 4134.753 kb on + strand, within DDA3937_RS18110at 4134.753 kb on + strand, within DDA3937_RS18110at 4134.753 kb on + strand, within DDA3937_RS18110at 4134.753 kb on + strand, within DDA3937_RS18110at 4134.754 kb on - strand, within DDA3937_RS18110at 4134.754 kb on - strand, within DDA3937_RS18110at 4134.754 kb on - strand, within DDA3937_RS18110at 4134.754 kb on - strand, within DDA3937_RS18110at 4134.754 kb on - strandat 4134.754 kb on - strand, within DDA3937_RS18110at 4134.754 kb on - strand, within DDA3937_RS18110at 4134.754 kb on - strand, within DDA3937_RS18110at 4134.904 kb on + strand, within DDA3937_RS18110at 4134.905 kb on - strand, within DDA3937_RS18110at 4134.905 kb on - strand, within DDA3937_RS18110at 4134.928 kb on + strand, within DDA3937_RS18110at 4135.038 kb on + strand, within DDA3937_RS18110at 4135.039 kb on - strand, within DDA3937_RS18110at 4135.039 kb on - strand, within DDA3937_RS18110at 4135.039 kb on - strand, within DDA3937_RS18110at 4135.039 kb on - strand, within DDA3937_RS18110at 4135.071 kb on - strand, within DDA3937_RS18110at 4135.099 kb on + strand, within DDA3937_RS18110at 4135.099 kb on + strand, within DDA3937_RS18110at 4135.099 kb on + strand, within DDA3937_RS18110at 4135.099 kb on + strand, within DDA3937_RS18110at 4135.100 kb on - strand, within DDA3937_RS18110at 4135.100 kb on - strand, within DDA3937_RS18110at 4135.100 kb on - strand, within DDA3937_RS18110at 4135.293 kb on + strandat 4135.293 kb on + strandat 4135.294 kb on - strandat 4135.348 kb on - strandat 4135.374 kb on - strandat 4135.449 kb on + strandat 4135.449 kb on + strandat 4135.449 kb on + strandat 4135.449 kb on + strandat 4135.449 kb on + strandat 4135.449 kb on + strandat 4135.449 kb on + strandat 4135.450 kb on - strandat 4135.450 kb on - strandat 4135.460 kb on + strandat 4135.461 kb on - strandat 4135.461 kb on - strandat 4135.461 kb on - strandat 4135.461 kb on - strandat 4135.498 kb on + strandat 4135.498 kb on + strandat 4135.499 kb on - strandat 4135.504 kb on + strandat 4135.505 kb on - strandat 4135.554 kb on + strandat 4135.555 kb on - strandat 4135.577 kb on + strand, within DDA3937_RS23335at 4135.578 kb on - strand, within DDA3937_RS23335at 4135.578 kb on - strand, within DDA3937_RS23335at 4135.578 kb on - strand, within DDA3937_RS23335at 4135.580 kb on + strand, within DDA3937_RS23335at 4135.581 kb on - strand, within DDA3937_RS23335at 4135.581 kb on - strand, within DDA3937_RS23335at 4135.583 kb on + strand, within DDA3937_RS23335at 4135.583 kb on + strand, within DDA3937_RS23335at 4135.583 kb on + strand, within DDA3937_RS23335at 4135.605 kb on + strand, within DDA3937_RS23335at 4135.650 kb on + strandat 4135.653 kb on - strandat 4135.653 kb on - strandat 4135.743 kb on + strandat 4135.744 kb on - strandat 4135.747 kb on - strandat 4135.902 kb on - strand, within DDA3937_RS18115at 4135.917 kb on + strand, within DDA3937_RS18115at 4136.046 kb on + strand, within DDA3937_RS18115at 4136.098 kb on + strand, within DDA3937_RS18115at 4136.098 kb on + strand, within DDA3937_RS18115at 4136.098 kb on + strand, within DDA3937_RS18115at 4136.099 kb on - strand, within DDA3937_RS18115at 4136.099 kb on - strand, within DDA3937_RS18115at 4136.099 kb on - strand, within DDA3937_RS18115at 4136.099 kb on - strand, within DDA3937_RS18115at 4136.099 kb on - strand, within DDA3937_RS18115at 4136.122 kb on + strand, within DDA3937_RS18115at 4136.123 kb on - strand, within DDA3937_RS18115at 4136.123 kb on - strand, within DDA3937_RS18115at 4136.123 kb on - strand, within DDA3937_RS18115at 4136.248 kb on + strand, within DDA3937_RS18115at 4136.290 kb on + strand, within DDA3937_RS18115at 4136.291 kb on - strand, within DDA3937_RS18115at 4136.313 kb on + strand, within DDA3937_RS18115at 4136.323 kb on - strand, within DDA3937_RS18115at 4136.527 kb on + strand, within DDA3937_RS18115at 4136.640 kb on - strand, within DDA3937_RS18115at 4136.659 kb on + strand, within DDA3937_RS18115at 4136.660 kb on - strand, within DDA3937_RS18115at 4136.764 kb on + strand, within DDA3937_RS18115at 4136.764 kb on + strand, within DDA3937_RS18115at 4136.765 kb on - strand, within DDA3937_RS18115at 4136.766 kb on + strandat 4136.766 kb on + strand, within DDA3937_RS18115at 4136.766 kb on + strand, within DDA3937_RS18115at 4136.767 kb on - strand, within DDA3937_RS18115at 4136.779 kb on + strand, within DDA3937_RS18115at 4136.779 kb on + strand, within DDA3937_RS18115at 4136.780 kb on - strand, within DDA3937_RS18115at 4136.780 kb on - strand, within DDA3937_RS18115at 4136.780 kb on - strand, within DDA3937_RS18115at 4136.797 kb on + strand, within DDA3937_RS18115at 4136.900 kb on - strand, within DDA3937_RS18115at 4136.900 kb on - strand, within DDA3937_RS18115at 4136.900 kb on - strand, within DDA3937_RS18115at 4136.911 kb on + strand, within DDA3937_RS18115at 4136.911 kb on + strand, within DDA3937_RS18115at 4136.911 kb on + strand, within DDA3937_RS18115at 4136.911 kb on + strand, within DDA3937_RS18115at 4136.912 kb on - strand, within DDA3937_RS18115at 4136.912 kb on - strand, within DDA3937_RS18115at 4137.023 kb on + strand, within DDA3937_RS18115at 4137.023 kb on + strand, within DDA3937_RS18115at 4137.024 kb on - strand, within DDA3937_RS18115at 4137.024 kb on - strand, within DDA3937_RS18115at 4137.024 kb on - strand, within DDA3937_RS18115at 4137.024 kb on - strand, within DDA3937_RS18115at 4137.025 kb on + strand, within DDA3937_RS18115at 4137.025 kb on + strandat 4137.025 kb on + strandat 4137.026 kb on - strand, within DDA3937_RS18115at 4137.026 kb on - strand, within DDA3937_RS18115at 4137.026 kb on - strand, within DDA3937_RS18115at 4137.073 kb on + strand, within DDA3937_RS18115at 4137.074 kb on - strand, within DDA3937_RS18115at 4137.074 kb on - strand, within DDA3937_RS18115at 4137.137 kb on - strand, within DDA3937_RS18115at 4137.212 kb on + strandat 4137.212 kb on + strandat 4137.212 kb on + strandat 4137.213 kb on - strandat 4137.213 kb on - strandat 4137.213 kb on - strandat 4137.215 kb on + strandat 4137.215 kb on + strandat 4137.216 kb on - strandat 4137.216 kb on - strandat 4137.216 kb on - strandat 4137.216 kb on - strandat 4137.216 kb on - strandat 4137.315 kb on + strandat 4137.315 kb on + strandat 4137.315 kb on + strandat 4137.316 kb on - strandat 4137.316 kb on - strandat 4137.316 kb on - strandat 4137.316 kb on - strandat 4137.316 kb on - strandat 4137.372 kb on + strandat 4137.373 kb on - strandat 4137.373 kb on - strandat 4137.373 kb on - strandat 4137.373 kb on - strandat 4137.373 kb on - strandat 4137.374 kb on + strandat 4137.375 kb on - strandat 4137.375 kb on - strandat 4137.379 kb on + strandat 4137.380 kb on - strandat 4137.430 kb on - strand, within DDA3937_RS18120at 4137.430 kb on - strand, within DDA3937_RS18120at 4137.430 kb on - strand, within DDA3937_RS18120at 4137.437 kb on - strand, within DDA3937_RS18120at 4137.437 kb on - strand, within DDA3937_RS18120at 4137.642 kb on + strand, within DDA3937_RS18120at 4137.642 kb on + strand, within DDA3937_RS18120at 4137.643 kb on - strand, within DDA3937_RS18120at 4137.735 kb on + strand, within DDA3937_RS18120at 4137.735 kb on + strand, within DDA3937_RS18120at 4137.736 kb on - strand, within DDA3937_RS18120at 4137.764 kb on + strand, within DDA3937_RS18120at 4137.774 kb on + strand, within DDA3937_RS18120at 4137.774 kb on + strand, within DDA3937_RS18120at 4137.774 kb on + strand, within DDA3937_RS18120at 4137.774 kb on + strand, within DDA3937_RS18120at 4137.775 kb on - strand, within DDA3937_RS18120at 4137.775 kb on - strandat 4137.802 kb on - strand, within DDA3937_RS18120at 4137.824 kb on + strand, within DDA3937_RS18120at 4137.879 kb on - strand, within DDA3937_RS18120at 4137.975 kb on + strand, within DDA3937_RS18120at 4137.975 kb on + strand, within DDA3937_RS18120at 4137.975 kb on + strand, within DDA3937_RS18120at 4137.975 kb on + strand, within DDA3937_RS18120at 4137.976 kb on - strand, within DDA3937_RS18120at 4137.976 kb on - strand, within DDA3937_RS18120at 4137.976 kb on - strand, within DDA3937_RS18120at 4137.976 kb on - strand, within DDA3937_RS18120at 4137.976 kb on - strand, within DDA3937_RS18120at 4137.976 kb on - strand, within DDA3937_RS18120at 4137.976 kb on - strand, within DDA3937_RS18120at 4138.097 kb on + strand, within DDA3937_RS18120at 4138.097 kb on + strand, within DDA3937_RS18120at 4138.097 kb on + strand, within DDA3937_RS18120at 4138.098 kb on - strand, within DDA3937_RS18120at 4138.098 kb on - strand, within DDA3937_RS18120at 4138.140 kb on + strand, within DDA3937_RS18120at 4138.140 kb on + strand, within DDA3937_RS18120at 4138.140 kb on + strand, within DDA3937_RS18120at 4138.141 kb on - strand, within DDA3937_RS18120at 4138.141 kb on - strand, within DDA3937_RS18120at 4138.141 kb on - strand, within DDA3937_RS18120

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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4,134,752 - DDA3937_RS18110 0.69 -2.0
4,134,752 - DDA3937_RS18110 0.69 -0.8
4,134,753 + DDA3937_RS18110 0.69 -0.8
4,134,753 + -0.1
4,134,753 + DDA3937_RS18110 0.69 +0.6
4,134,753 + DDA3937_RS18110 0.69 -0.2
4,134,753 + DDA3937_RS18110 0.69 +0.0
4,134,753 + DDA3937_RS18110 0.69 -0.4
4,134,753 + DDA3937_RS18110 0.69 -1.2
4,134,754 - DDA3937_RS18110 0.69 +0.7
4,134,754 - DDA3937_RS18110 0.69 -1.0
4,134,754 - DDA3937_RS18110 0.69 +0.2
4,134,754 - DDA3937_RS18110 0.69 +1.9
4,134,754 - +3.4
4,134,754 - DDA3937_RS18110 0.69 -0.6
4,134,754 - DDA3937_RS18110 0.69 -0.7
4,134,754 - DDA3937_RS18110 0.69 -0.7
4,134,904 + DDA3937_RS18110 0.77 -1.0
4,134,905 - DDA3937_RS18110 0.77 +0.3
4,134,905 - DDA3937_RS18110 0.77 -0.1
4,134,928 + DDA3937_RS18110 0.78 -0.4
4,135,038 + DDA3937_RS18110 0.84 +0.5
4,135,039 - DDA3937_RS18110 0.84 -0.5
4,135,039 - DDA3937_RS18110 0.84 -0.6
4,135,039 - DDA3937_RS18110 0.84 -1.9
4,135,039 - DDA3937_RS18110 0.84 -0.8
4,135,071 - DDA3937_RS18110 0.86 -0.1
4,135,099 + DDA3937_RS18110 0.88 -2.3
4,135,099 + DDA3937_RS18110 0.88 -1.6
4,135,099 + DDA3937_RS18110 0.88 -0.3
4,135,099 + DDA3937_RS18110 0.88 -0.1
4,135,100 - DDA3937_RS18110 0.88 -1.2
4,135,100 - DDA3937_RS18110 0.88 -0.4
4,135,100 - DDA3937_RS18110 0.88 +0.4
4,135,293 + -0.4
4,135,293 + -1.1
4,135,294 - -0.5
4,135,348 - -1.0
4,135,374 - +0.2
4,135,449 + -0.7
4,135,449 + -0.9
4,135,449 + -1.0
4,135,449 + -2.3
4,135,449 + -0.9
4,135,449 + +0.3
4,135,449 + -0.9
4,135,450 - -1.2
4,135,450 - -3.5
4,135,460 + +0.1
4,135,461 - +1.9
4,135,461 - -0.3
4,135,461 - -1.4
4,135,461 - +0.9
4,135,498 + +1.1
4,135,498 + -0.4
4,135,499 - -1.5
4,135,504 + -0.9
4,135,505 - -0.9
4,135,554 + -0.3
4,135,555 - -0.5
4,135,577 + DDA3937_RS23335 0.33 +0.1
4,135,578 - DDA3937_RS23335 0.35 -2.6
4,135,578 - DDA3937_RS23335 0.35 -2.1
4,135,578 - DDA3937_RS23335 0.35 -1.7
4,135,580 + DDA3937_RS23335 0.37 -0.9
4,135,581 - DDA3937_RS23335 0.38 -1.1
4,135,581 - DDA3937_RS23335 0.38 -2.7
4,135,583 + DDA3937_RS23335 0.40 -0.1
4,135,583 + DDA3937_RS23335 0.40 +0.0
4,135,583 + DDA3937_RS23335 0.40 -2.3
4,135,605 + DDA3937_RS23335 0.67 +1.4
4,135,650 + -0.3
4,135,653 - -1.4
4,135,653 - -3.8
4,135,743 + -3.4
4,135,744 - -0.1
4,135,747 - +1.0
4,135,902 - DDA3937_RS18115 0.11 -0.8
4,135,917 + DDA3937_RS18115 0.12 -0.1
4,136,046 + DDA3937_RS18115 0.20 -1.7
4,136,098 + DDA3937_RS18115 0.23 -2.5
4,136,098 + DDA3937_RS18115 0.23 -2.8
4,136,098 + DDA3937_RS18115 0.23 -2.5
4,136,099 - DDA3937_RS18115 0.23 -1.7
4,136,099 - DDA3937_RS18115 0.23 -0.9
4,136,099 - DDA3937_RS18115 0.23 -2.7
4,136,099 - DDA3937_RS18115 0.23 -3.1
4,136,099 - DDA3937_RS18115 0.23 -3.1
4,136,122 + DDA3937_RS18115 0.25 -2.1
4,136,123 - DDA3937_RS18115 0.25 -0.5
4,136,123 - DDA3937_RS18115 0.25 -1.7
4,136,123 - DDA3937_RS18115 0.25 -0.5
4,136,248 + DDA3937_RS18115 0.33 -4.3
4,136,290 + DDA3937_RS18115 0.36 -1.1
4,136,291 - DDA3937_RS18115 0.36 -1.7
4,136,313 + DDA3937_RS18115 0.37 -2.5
4,136,323 - DDA3937_RS18115 0.38 -2.8
4,136,527 + DDA3937_RS18115 0.51 -3.3
4,136,640 - DDA3937_RS18115 0.58 -1.8
4,136,659 + DDA3937_RS18115 0.59 -3.3
4,136,660 - DDA3937_RS18115 0.59 +0.9
4,136,764 + DDA3937_RS18115 0.66 -2.6
4,136,764 + DDA3937_RS18115 0.66 -2.8
4,136,765 - DDA3937_RS18115 0.66 -1.7
4,136,766 + -0.9
4,136,766 + DDA3937_RS18115 0.66 -0.1
4,136,766 + DDA3937_RS18115 0.66 -2.2
4,136,767 - DDA3937_RS18115 0.66 -3.7
4,136,779 + DDA3937_RS18115 0.67 -0.7
4,136,779 + DDA3937_RS18115 0.67 -1.5
4,136,780 - DDA3937_RS18115 0.67 -0.4
4,136,780 - DDA3937_RS18115 0.67 -1.1
4,136,780 - DDA3937_RS18115 0.67 -1.4
4,136,797 + DDA3937_RS18115 0.68 -1.1
4,136,900 - DDA3937_RS18115 0.74 -1.9
4,136,900 - DDA3937_RS18115 0.74 -1.0
4,136,900 - DDA3937_RS18115 0.74 -1.4
4,136,911 + DDA3937_RS18115 0.75 -1.5
4,136,911 + DDA3937_RS18115 0.75 -1.4
4,136,911 + DDA3937_RS18115 0.75 -1.0
4,136,911 + DDA3937_RS18115 0.75 +1.8
4,136,912 - DDA3937_RS18115 0.75 -3.9
4,136,912 - DDA3937_RS18115 0.75 -0.9
4,137,023 + DDA3937_RS18115 0.82 +3.5
4,137,023 + DDA3937_RS18115 0.82 -0.9
4,137,024 - DDA3937_RS18115 0.82 -1.5
4,137,024 - DDA3937_RS18115 0.82 -2.1
4,137,024 - DDA3937_RS18115 0.82 +0.9
4,137,024 - DDA3937_RS18115 0.82 -1.2
4,137,025 + DDA3937_RS18115 0.82 +1.1
4,137,025 + -0.5
4,137,025 + +1.5
4,137,026 - DDA3937_RS18115 0.82 -1.5
4,137,026 - DDA3937_RS18115 0.82 -0.4
4,137,026 - DDA3937_RS18115 0.82 -2.0
4,137,073 + DDA3937_RS18115 0.85 -1.6
4,137,074 - DDA3937_RS18115 0.85 -2.5
4,137,074 - DDA3937_RS18115 0.85 -2.2
4,137,137 - DDA3937_RS18115 0.89 -0.6
4,137,212 + -2.0
4,137,212 + -1.2
4,137,212 + -2.0
4,137,213 - -0.5
4,137,213 - -2.5
4,137,213 - -1.8
4,137,215 + -1.4
4,137,215 + -1.6
4,137,216 - -3.8
4,137,216 - -3.1
4,137,216 - -3.7
4,137,216 - -2.0
4,137,216 - -2.2
4,137,315 + -3.2
4,137,315 + -3.4
4,137,315 + -2.5
4,137,316 - +0.6
4,137,316 - -2.0
4,137,316 - -3.5
4,137,316 - -4.0
4,137,316 - -0.1
4,137,372 + -1.4
4,137,373 - -2.5
4,137,373 - -2.6
4,137,373 - -0.5
4,137,373 - -1.4
4,137,373 - -3.5
4,137,374 + -2.7
4,137,375 - -2.8
4,137,375 - -0.1
4,137,379 + -2.2
4,137,380 - -1.5
4,137,430 - DDA3937_RS18120 0.12 -2.5
4,137,430 - DDA3937_RS18120 0.12 -1.1
4,137,430 - DDA3937_RS18120 0.12 -2.8
4,137,437 - DDA3937_RS18120 0.12 -1.7
4,137,437 - DDA3937_RS18120 0.12 -1.5
4,137,642 + DDA3937_RS18120 0.31 -1.7
4,137,642 + DDA3937_RS18120 0.31 -3.9
4,137,643 - DDA3937_RS18120 0.31 -3.2
4,137,735 + DDA3937_RS18120 0.40 -1.5
4,137,735 + DDA3937_RS18120 0.40 -1.4
4,137,736 - DDA3937_RS18120 0.40 -3.8
4,137,764 + DDA3937_RS18120 0.42 -2.4
4,137,774 + DDA3937_RS18120 0.43 -0.7
4,137,774 + DDA3937_RS18120 0.43 -2.5
4,137,774 + DDA3937_RS18120 0.43 -1.7
4,137,774 + DDA3937_RS18120 0.43 -1.1
4,137,775 - DDA3937_RS18120 0.43 -3.8
4,137,775 - -0.1
4,137,802 - DDA3937_RS18120 0.46 -0.1
4,137,824 + DDA3937_RS18120 0.48 -0.9
4,137,879 - DDA3937_RS18120 0.53 -2.1
4,137,975 + DDA3937_RS18120 0.62 -2.9
4,137,975 + DDA3937_RS18120 0.62 -3.1
4,137,975 + DDA3937_RS18120 0.62 -0.1
4,137,975 + DDA3937_RS18120 0.62 -2.2
4,137,976 - DDA3937_RS18120 0.62 -2.1
4,137,976 - DDA3937_RS18120 0.62 -3.3
4,137,976 - DDA3937_RS18120 0.62 -3.3
4,137,976 - DDA3937_RS18120 0.62 -0.1
4,137,976 - DDA3937_RS18120 0.62 -3.2
4,137,976 - DDA3937_RS18120 0.62 -2.7
4,137,976 - DDA3937_RS18120 0.62 -2.4
4,138,097 + DDA3937_RS18120 0.73 -0.9
4,138,097 + DDA3937_RS18120 0.73 -1.9
4,138,097 + DDA3937_RS18120 0.73 -2.1
4,138,098 - DDA3937_RS18120 0.73 -4.4
4,138,098 - DDA3937_RS18120 0.73 -2.2
4,138,140 + DDA3937_RS18120 0.77 -3.4
4,138,140 + DDA3937_RS18120 0.77 -3.5
4,138,140 + DDA3937_RS18120 0.77 -3.5
4,138,141 - DDA3937_RS18120 0.77 +0.4
4,138,141 - DDA3937_RS18120 0.77 +0.5
4,138,141 - DDA3937_RS18120 0.77 -0.1

Or see this region's nucleotide sequence