Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17570

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,994,539	-		DDA3937_RS17565	0.29	+0.4
3,994,539	-		DDA3937_RS17565	0.29	+0.9
3,994,579	-		DDA3937_RS17565	0.32	+2.0
3,994,640	+		DDA3937_RS17565	0.36	+0.5
3,994,640	+		DDA3937_RS17565	0.36	-0.1
3,994,641	-		DDA3937_RS17565	0.36	-1.9
3,994,641	-		DDA3937_RS17565	0.36	-0.8
3,994,680	+		DDA3937_RS17565	0.39	-0.5
3,994,680	+		DDA3937_RS17565	0.39	+0.5
3,994,680	+		DDA3937_RS17565	0.39	-0.7
3,994,680	+		DDA3937_RS17565	0.39	-0.1
3,994,681	-		DDA3937_RS17565	0.39	-1.1
3,994,681	-		DDA3937_RS17565	0.39	+1.1
3,994,717	+		DDA3937_RS17565	0.42	-0.1
3,994,718	-		DDA3937_RS17565	0.42	+0.4
3,994,718	-		DDA3937_RS17565	0.42	-1.1
3,994,764	+		DDA3937_RS17565	0.45	-0.1
3,994,764	+		DDA3937_RS17565	0.45	-0.6
3,994,888	-		DDA3937_RS17565	0.55	+0.1
3,994,901	+		DDA3937_RS17565	0.56	+0.0
3,994,901	+		DDA3937_RS17565	0.56	-0.3
3,994,901	+		DDA3937_RS17565	0.56	-0.7
3,994,901	+		DDA3937_RS17565	0.56	+1.1
3,994,902	-		DDA3937_RS17565	0.56	-1.1
3,994,902	-		DDA3937_RS17565	0.56	-0.7
3,994,932	+		DDA3937_RS17565	0.58	-0.0
3,994,932	+		DDA3937_RS17565	0.58	-1.5
3,994,932	+		DDA3937_RS17565	0.58	-1.6
3,994,933	-		DDA3937_RS17565	0.58	+2.2
3,995,173	+		DDA3937_RS17565	0.76	+1.0
3,995,174	-		DDA3937_RS17565	0.76	+2.9
3,995,203	+		DDA3937_RS17565	0.78	-0.5
3,995,331	-		DDA3937_RS17565	0.88	-0.6
3,995,417	-				+0.1
3,995,455	+				-2.1
3,995,457	+				-0.6
3,995,457	+				+0.2
3,995,457	+				+0.8
3,995,458	-				+0.8
3,995,458	-				-0.1
3,995,458	-				+1.6
3,995,458	-				-1.6
3,995,458	-				-0.4
3,995,458	-				-0.9
3,995,467	+				-1.4
3,995,467	+				+0.7
3,995,559	+				-0.1
3,995,559	+				-0.6
3,995,560	-				-1.0
3,995,568	+				-1.2
3,995,757	+				-0.1
3,995,758	-				+0.4
3,995,758	-				-0.4
3,995,758	-				-0.4
3,996,020	+		DDA3937_RS17570	0.16	-0.9
3,996,033	+		DDA3937_RS17570	0.16	+1.8
3,996,117	+		DDA3937_RS17570	0.19	-0.9
3,996,217	+		DDA3937_RS17570	0.22	+0.8
3,996,218	-		DDA3937_RS17570	0.22	-0.8
3,996,257	+		DDA3937_RS17570	0.23	+0.0
3,996,257	+		DDA3937_RS17570	0.23	-1.9
3,996,257	+		DDA3937_RS17570	0.23	-1.9
3,996,257	+		DDA3937_RS17570	0.23	+0.9
3,996,258	-		DDA3937_RS17570	0.23	-0.9
3,996,258	-		DDA3937_RS17570	0.23	-1.7
3,996,449	+		DDA3937_RS17570	0.29	-0.8
3,996,449	+		DDA3937_RS17570	0.29	+0.9
3,996,449	+		DDA3937_RS17570	0.29	-1.1
3,996,450	-		DDA3937_RS17570	0.29	+0.5
3,996,697	+		DDA3937_RS17570	0.36	-0.0
3,996,697	+		DDA3937_RS17570	0.36	-1.5
3,996,697	+		DDA3937_RS17570	0.36	+0.2
3,996,698	-		DDA3937_RS17570	0.36	-1.2
3,996,698	-		DDA3937_RS17570	0.36	+0.2
3,996,698	-		DDA3937_RS17570	0.36	-1.1
3,996,774	+		DDA3937_RS17570	0.39	-0.3
3,996,774	+		DDA3937_RS17570	0.39	-0.5
3,996,774	+		DDA3937_RS17570	0.39	+2.6
3,996,774	+		DDA3937_RS17570	0.39	-1.7
3,996,774	+		DDA3937_RS17570	0.39	-0.2
3,996,775	-		DDA3937_RS17570	0.39	+0.8
3,996,775	-		DDA3937_RS17570	0.39	+2.7
3,996,775	-		DDA3937_RS17570	0.39	-0.8
3,996,887	+		DDA3937_RS17570	0.42	-0.5
3,996,888	-		DDA3937_RS17570	0.42	-2.5
3,997,220	+		DDA3937_RS17570	0.52	+0.5
3,997,220	+		DDA3937_RS17570	0.52	-1.4
3,997,220	+		DDA3937_RS17570	0.52	+1.8
3,997,221	-		DDA3937_RS17570	0.52	+1.2
3,997,221	-		DDA3937_RS17570	0.52	-0.1
3,997,221	-		DDA3937_RS17570	0.52	+1.7
3,997,454	+		DDA3937_RS17570	0.59	-0.1
3,997,454	+		DDA3937_RS17570	0.59	+0.3
3,997,454	+		DDA3937_RS17570	0.59	-0.8
3,997,747	-		DDA3937_RS17570	0.68	-0.9
3,997,805	+		DDA3937_RS17570	0.70	-0.6
3,997,805	+		DDA3937_RS17570	0.70	-0.5
3,997,805	+		DDA3937_RS17570	0.70	-1.2
3,997,806	-		DDA3937_RS17570	0.70	+0.7
3,997,806	-		DDA3937_RS17570	0.70	-0.4
3,998,392	+		DDA3937_RS17570	0.88	-2.0
3,998,392	+		DDA3937_RS17570	0.88	-0.7
3,998,393	-		DDA3937_RS17570	0.88	-0.7
3,998,393	-		DDA3937_RS17570	0.88	-0.6
3,998,397	+		DDA3937_RS17570	0.88	+1.2
3,998,397	+		DDA3937_RS17570	0.88	+0.6
3,998,397	+		DDA3937_RS17570	0.88	-0.9
3,998,397	+		DDA3937_RS17570	0.88	-0.1
3,998,397	+		DDA3937_RS17570	0.88	-0.6
3,998,463	+				+0.2
3,998,485	-				-0.5
3,998,485	-				-0.7
3,998,497	-				-2.1
3,998,567	-				-1.3
3,998,741	-				-0.8
3,998,741	-				-1.0
3,998,969	+		DDA3937_RS17575	0.19	+0.3
3,999,088	+		DDA3937_RS17575	0.31	-1.1
3,999,088	+		DDA3937_RS17575	0.31	+2.0
3,999,088	+		DDA3937_RS17575	0.31	+3.0
3,999,088	+		DDA3937_RS17575	0.31	-1.1
3,999,089	-		DDA3937_RS17575	0.31	+0.2
3,999,089	-		DDA3937_RS17575	0.31	+0.9
3,999,189	+		DDA3937_RS17575	0.41	-0.6
3,999,189	+		DDA3937_RS17575	0.41	-0.8
3,999,190	-		DDA3937_RS17575	0.41	+0.9
3,999,190	-		DDA3937_RS17575	0.41	-1.8
3,999,437	-		DDA3937_RS17575	0.65	-0.1
3,999,437	-		DDA3937_RS17575	0.65	-1.5
3,999,617	+		DDA3937_RS17575	0.83	-1.3
3,999,620	+		DDA3937_RS17575	0.84	+0.1
3,999,620	+		DDA3937_RS17575	0.84	-0.3
3,999,620	+		DDA3937_RS17575	0.84	-1.6
3,999,621	-		DDA3937_RS17575	0.84	+1.2
3,999,640	+		DDA3937_RS17575	0.86	+0.8
3,999,640	+		DDA3937_RS17575	0.86	+2.0
3,999,640	+		DDA3937_RS17575	0.86	-0.3
3,999,670	+		DDA3937_RS17575	0.89	+0.6
3,999,670	+		DDA3937_RS17575	0.89	-0.4
3,999,670	+		DDA3937_RS17575	0.89	+1.0
3,999,671	-		DDA3937_RS17575	0.89	-0.2
3,999,671	-		DDA3937_RS17575	0.89	+0.2
3,999,671	-		DDA3937_RS17575	0.89	+0.7
3,999,671	-		DDA3937_RS17575	0.89	-0.6
3,999,671	-		DDA3937_RS17575	0.89	+0.7
3,999,671	-		DDA3937_RS17575	0.89	+0.4
3,999,698	+				-1.5
3,999,698	+				-1.4
3,999,715	+				+1.3
3,999,718	+				-0.6
3,999,718	+				+0.1
3,999,718	+				+2.0
3,999,718	+				-0.1
3,999,718	+				-2.6
3,999,719	-				-0.5
3,999,719	-				-1.9
3,999,722	+				+0.4
3,999,722	+				-1.6
3,999,723	-				-0.6
3,999,723	-				-2.7
3,999,771	+				-0.3
3,999,771	+				-2.9
3,999,771	+				-1.7
3,999,771	+				-0.1
3,999,771	+				-0.9
3,999,771	+				+0.9
3,999,771	+				+0.0
3,999,771	+				-0.6
3,999,772	-				+0.1
3,999,772	-				-1.6
3,999,772	-				-1.6
3,999,772	-				+0.2
3,999,782	+				-1.2
3,999,782	+				+1.4
3,999,782	+				-0.2